BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52960.1
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949862 jgi|Araly1|949862|scaffold_801749.1 859 0.0
> Ahg949862 jgi|Araly1|949862|scaffold_801749.1
Length=559
Score = 859 bits (465), Expect = 0.0
Identities = 528/559 (94%), Gaps = 2/559 (0%)
Strand=Plus/Plus
Query 79 TTTTCTCGGAGAAAATTCTCGTAATCATGAACTGTGTTTCTGCATTTGAATTTG-TTCCT 137
||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct 1 TTTTCTCGGAGAAAATTTTCGTAATCATGAACTGTGTCTCTACATTTGAA-TTGATTCCT 59
Query 138 TCAAGTGCTCTATTTCCATGTGCACAATCATCAATCCCTGCGAAATTTCTTCACATTTTG 197
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 60 TCAAGTGCTCTATTTCCATGTGCAAAATTATCAATCCCTGCGAAATTTCTTCACATTTCG 119
Query 198 AGCTCAAAAGCCTCGATTTCTCCCAGATGTCGTAGTTTCGCTTCTTCTTCTTCTTCCACA 257
|||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 120 AGCTCAAAAGCCTCAATTTCTCCCAGATGTCGTAGTTTCACTTTTTCTTCTTCTTCCTCA 179
Query 258 ATTCGGAGGAAGCCTCTAACTCTAGTATCTTCAAAATCTTCAGACGCGGAGGAGGTGTCA 317
||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 180 ATTCGGAGGAAACCTTTAACTCTAGTTTCTTCGAAATCGTCAGACGCGGAGGAGGTGTCA 239
Query 318 GATACGGAGGACGAATGGCTGAAGAAGCTACCAGAGAAGAACAAGCCACTGTATTCGCAT 377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 GATACGGAGGACGAATGGCTGAAGAAGCTACCGGAGAAGAACAAGCCACTGTATTCGCAT 299
Query 378 AGCTTACCTTGTATCGAAGCGTGGCTGAGGAAATTAGGGTTTTACCAAAGTAAAGACGAT 437
||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct 300 AGCTTACCTTGTATCGAGGCATGGTTGAGGAAATTAGGGTTTTACCAAAGCAAAGACGAT 359
Query 438 AGAGCTGTTTGGTTGATTCAGAAACCTGATTGGCATGCTCAACTATCTCTTGATGTCACT 497
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 360 AGAGCTGTTTGGTTGATTCAGAAACCTGATTGGCATGCTCAATTATCTCTTGACGTCACA 419
Query 498 GATCTCTGCATTAGGTACATGAAAAGTGGGCCGGGAAATCTAGAGAGAGACATGGAAAGA 557
|||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 420 GATCTCTGCATTAGGTACTTGAAAAGCGGGCCGGGGAATCTAGAGAGAGACATGGAAAGA 479
Query 558 AGGTTTAGCTATGCGTTGAGTAGAGAAGATACCGAGAATGCCATACTTGGAGGACCTTAA 617
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 480 AGGTTTAGCTATGCGTTGAGTAGAGAAGATACTGAGAATGCCATACTCGGAGGACCTTAA 539
Query 618 AGAATAAAAAGAGTTTGTT 636
|||||| ||||||||||||
Sbjct 540 AGAATATAAAGAGTTTGTT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28973416920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5