BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52965.1
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916924 jgi|Araly1|916924|Al_scaffold_0008_1675 566 5e-161
Ahg916927 jgi|Araly1|916927|Al_scaffold_0008_1678 499 5e-141
Ahg900438 jgi|Araly1|900438|Al_scaffold_0004_1088 411 2e-114
> Ahg916924 jgi|Araly1|916924|Al_scaffold_0008_1675
Length=363
Score = 566 bits (306), Expect = 5e-161
Identities = 344/363 (95%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACCAAAACTTTTCTCTCAATCTCTTTAATGGTTTCCCTTTGTGCTGCCATTTTT 60
||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 1 ATGGCAAGCAAAACTGTTCTCTCAATATCTTTAATGGTTTCCCTTTGTGTTGCCATATTT 60
Query 61 GTCTCTCAAGGAGTAGCTCATATGCAAACACCACCAACGGTTCCAGGACTTCTCCTACCT 120
||| |||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||
Sbjct 61 GTCACTCAAGGAGTAGCTCATACGCAAACACCGCCAACGGTTCCAGGACTTTTCCCACCT 120
Query 121 GGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGTG 180
Query 181 CTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTGC 240
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 181 CTCGAGATCGCCAAATCAATTTTCTCCGGAAAATTTGAAAATGTCGAAGCCGCATGTTGC 240
Query 241 AAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCATTT 300
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 241 AAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCCCAAATGTTTCCGTTGAATCCGTTC 300
Query 301 TTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCTACACACAAC 360
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 301 TTCCCTCCTCTCCTCAAGGATAACTGTGCCCGCATTGTCCCCAACTCCCCTACACACAAC 360
Query 361 TAA 363
|||
Sbjct 361 TAA 363
> Ahg916927 jgi|Araly1|916927|Al_scaffold_0008_1678
Length=363
Score = 499 bits (270), Expect = 5e-141
Identities = 325/352 (92%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACCAAAACTTTTCTCTCAATC-TCTTTAATGGTTTCCCTTTGTGCTGCCATTTT 59
|||| || |||| || || |||||| | || ||||||||||||||||||| |||||||||
Sbjct 1 ATGGGAAGCAAAGCTGTTGTCTCAAGCTTC-TTAATGGTTTCCCTTTGTGTTGCCATTTT 59
Query 60 TGTCTCTCAAGGAGTAGCTCATATGCAAACACCACCAACGGTTCCAGGACTTCTCCTACC 119
|||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 60 TGTCACTCAAGGAGTAGCTCATACGCAAACACCACCAACGGTTCCAGGACTTTTCCCACC 119
Query 120 TGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGT 179
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGCTCACCCATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGTGT 179
Query 180 GCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGTTG 239
Query 240 CAAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCATT 299
|||||||||| ||||||||| | ||||||||||| || ||||||||||||||||| ||
Sbjct 240 TAAGGCGTTTTTGACCTTAGATACCAACTGTTGGCCACAAATGTTTCCGTTGAATCCGTT 299
Query 300 TTTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCT 351
|||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 300 CTTCCCTCCTCTCCTCAAGGATATCTGCGCTCGCATTGTCCCCAATTCCCCT 351
> Ahg900438 jgi|Araly1|900438|Al_scaffold_0004_1088
Length=363
Score = 411 bits (222), Expect = 2e-114
Identities = 319/366 (87%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 1 ATGGCAACCAAAACTTTTCTCTCAATCTCT-TTAATGGTTTCCCTTTGTGCTGCCATTT- 58
|||| || |||| || || | ||||||| | ||||||||||||||||||| | ||||||
Sbjct 1 ATGGGAAGCAAAGCTGTTGTATCAATCT-TGTTAATGGTTTCCCTTTGTGGTACCATTTC 59
Query 59 TTGTCTCTCAAGGAGTAGCTCATATGCAAACACCA-CCAACGGTTCCAGGACTTCTCCTA 117
|| || |||||||||||||| | ||||||| | || || || ||||||||||| ||| |
Sbjct 60 TT-TCACTCAAGGAGTAGCTGAAATGCAAA-AGCAGCCGACATTTCCAGGACTTTTCCCA 117
Query 118 CCTGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGT 177
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 118 CCTGGCTTACCCATTGATCTAGTAAAATGTTGGTCGTCTCTCTTCAACGTTGAAGGATGT 177
Query 178 GTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGT 237
|||||||| ||| | |||||||||||||| || ||||| |||||| | |||| |||||||
Sbjct 178 GTGCTCGAAATCTCTAAATCAATTTTCTCAGGCAAATTTGAAAATATTGAAGGCGCATGT 237
Query 238 TGCAAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCA 297
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCCATATGTTTCCGTTGAATCCG 297
Query 298 TTTTTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCTACACAC 357
||||||||||||||||||||||| | || || || |||||||| ||||| |||||||||
Sbjct 298 TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCGCGTATTGTCCCAAACTCTCCTACACAC 357
Query 358 AACTAA 363
||||||
Sbjct 358 AACTAA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12934744671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5