BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52970.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495362 jgi|Araly1|495362|fgenesh2_kg.8__1178__AT5G52970.1 1166 0.0
> Ahg495362 jgi|Araly1|495362|fgenesh2_kg.8__1178__AT5G52970.1
Length=847
Score = 1166 bits (631), Expect = 0.0
Identities = 807/885 (91%), Gaps = 40/885 (5%)
Strand=Plus/Plus
Query 19 GTCATGGCGATGCTTTTTCGACCTCCTCCTTCACAATGTAGAAGCTTCTCTCCTTTTGTC 78
|||||||||||||| |||| |||||||||| | |||||||||||||||||||||| ||||
Sbjct 1 GTCATGGCGATGCTCTTTCTACCTCCTCCTACGCAATGTAGAAGCTTCTCTCCTTCTGTC 60
Query 79 TTCAACTACAGCTCCAGAGAAGTTTCTTCGTCGTCTCGTCTCTCCTTGAAAACCTCCGGC 138
|||||| ||| |||||||||| |||| ||||| ||| ||||||||||||||||||||||
Sbjct 61 TTCAACCACATCTCCAGAGAAATTTCATCGTC-TCT--TCTCTCCTTGAAAACCTCCGGC 117
Query 139 GACGAAGAAAACTGGGTTTCACGTTTCCGGTCGAAATCTCTCAGTTTGGTGTTCTCTGGA 198
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 GACGAAGAAAACTGGGTTTCACGTTTCCGGTCAAAATCTCTCAGTTTGGTGTTCTCTGGA 177
Query 199 GCTCTTGCTCTCGGTTTATCTCTATCAGGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTT 258
|| || |||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 178 GCCCTCGCTCTCGGTTTATCTCTATCGGGCGTTGGATTTGCAGAGGCAAAAGTTGGTGTC 237
Query 259 AACAAACCAGAATTGCTT-CCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCT 317
||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 238 AACAAACCAGAATTG-TTACCTAAAGAGTTCACTTCTGTCATAGATGTTGCTGGTTTCCT 296
Query 318 CTCTAATGGTCAGGAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGG 377
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTCTAATGGTCAGGAGAAAAGGATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGG 356
Query 378 ATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTAC-CCCTGGACTAGCAATCAAAG 436
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 357 ATTCAAGTTGAGAGTCTTGGCCCAAAACTATCCCGTTACACCC-GGACTAGCAATCAAAG 415
Query 437 ATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACTTTTGGGAACA 496
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 ATTTCTGGCAGGTGGATGATAGCACAATTGTGTTTGTCGCTGACCCGACATTTGGGAACA 475
Query 497 TATTGAATTTCAATGTTGGAGCTACGGTTGATTTAGACATACCTCGTAGTTTCTGGAGTC 556
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 TATTGAATTTCAATGTTGGGGCTACAGTTGATTTAGACATACCTCGTAGTTTCTGGAGTC 535
Query 557 GACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGGGAGAAGATGCATCTA 616
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 536 GATTGGCTGGGAAATACGGCAACATGTTTTACTGGAAAGAGAAGGGAGAAGATGCATCCA 595
Query 617 TTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACT 676
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 596 TTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCCAAATAACT 655
Query 677 GTGCAGAGATCCAATGAAGTATATGACCCCATCAAGCGTATATGTTATTATCATAATATC 736
|||||||||||||||||||||||||||||| || ||||| | ||| ||| | |
Sbjct 656 GTGCAGAGATCCAATGAAGTATATGACCCC--CATT-GTATA-G--ATTGGCATCA-A-- 706
Query 737 ATTGTATAGATTGGCACCAAAGAGATACAGAATTTGTAAGAATGAATCCACGTCTAGTAG 796
| | | ||| || | || || || |||||||||||||||||||| | |
Sbjct 707 A--G-A--GAT----AC-A--GA-AT------TT-GTAAGAATGAATCCACGTCT--T-G 743
Query 797 TAACCTCTCTCCATTTCTCAGCTTCACCTACTCAAACAAACAGTTTCAATTGGTTACTTG 856
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 744 TAACCTCTCTCCATTTCTCAGCTTCACCTCCTTAAACAAACAGTTTCAATTGGT-ACTTG 802
Query 857 TATCTTTTAAAACAAACAAATAGAGAAACCAAAATCAATAAACTG 901
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 803 TATCTCTTAAAACAAACAAATAGAGAAACCAAAATCAATAAACTG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5