BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52975.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916924 jgi|Araly1|916924|Al_scaffold_0008_1675 545 1e-154
Ahg916927 jgi|Araly1|916927|Al_scaffold_0008_1678 507 5e-143
Ahg949864 jgi|Araly1|949864|scaffold_801751.1 165 3e-40
> Ahg916924 jgi|Araly1|916924|Al_scaffold_0008_1675
Length=363
Score = 545 bits (295), Expect = 1e-154
Identities = 344/367 (94%), Gaps = 5/367 (1%)
Strand=Plus/Plus
Query 58 ATGGGAAGCAAAACTATTCTCTCAGTCAT-TTTGATTGTTTCCCTTTGTGTTGCCATTTT 116
|||| |||||||||| |||||||| | || ||| || |||||||||||||||||||| ||
Sbjct 1 ATGGCAAGCAAAACTGTTCTCTCAAT-ATCTTTAATGGTTTCCCTTTGTGTTGCCATATT 59
Query 117 TGTCACTCAAGGAGTAGCTCATATGCAAACACCACCGACGACGGTTCCAGGAATTTTCCC 176
||||||||||||||||||||||| ||||||||| || | |||||||||||| |||||||
Sbjct 60 TGTCACTCAAGGAGTAGCTCATACGCAAACACCGCC-A--ACGGTTCCAGGACTTTTCCC 116
Query 177 ACCTGGCTTACCTATTGATCTGGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATG 236
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACCTGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATG 176
Query 237 TGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATG 296
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 177 TGTGCTCGAGATCGCCAAATCAATTTTCTCCGGAAAATTTGAAAATGTCGAAGCCGCATG 236
Query 297 TTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCTCACATGTTTCCGTTGAATCC 356
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 237 TTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCCCAAATGTTTCCGTTGAATCC 296
Query 357 GTTCTTCCCTCCTCTCCTCAAGGATAGCTGCGCTCGTATTGTCCCCAACTCCCCTACACA 416
|||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||
Sbjct 297 GTTCTTCCCTCCTCTCCTCAAGGATAACTGTGCCCGCATTGTCCCCAACTCCCCTACACA 356
Query 417 CAACTAA 423
|||||||
Sbjct 357 CAACTAA 363
> Ahg916927 jgi|Araly1|916927|Al_scaffold_0008_1678
Length=363
Score = 507 bits (274), Expect = 5e-143
Identities = 330/356 (93%), Gaps = 7/356 (2%)
Strand=Plus/Plus
Query 58 ATGGGAAGCAAAACTATTCTCTC-AGTCATT-TTGATTGTTTCCCTTTGTGTTGCCATTT 115
|||||||||||| || || |||| || | || || || ||||||||||||||||||||||
Sbjct 1 ATGGGAAGCAAAGCTGTTGTCTCAAG-C-TTCTTAATGGTTTCCCTTTGTGTTGCCATTT 58
Query 116 TTGTCACTCAAGGAGTAGCTCATATGCAAACACCACCGACGACGGTTCCAGGAATTTTCC 175
|||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct 59 TTGTCACTCAAGGAGTAGCTCATACGCAAACACCACC-A--ACGGTTCCAGGACTTTTCC 115
Query 176 CACCTGGCTTACCTATTGATCTGGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGAT 235
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 116 CACCTGGCTCACCCATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGAT 175
Query 236 GTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCAT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTGTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCAT 235
Query 296 GTTGCAAGGCGTTTTCGACCTTAGATGCTAACTGTTGGCCTCACATGTTTCCGTTGAATC 355
|||| |||||||||| |||||||||| | ||||||||||| || ||||||||||||||||
Sbjct 236 GTTGTAAGGCGTTTTTGACCTTAGATACCAACTGTTGGCCACAAATGTTTCCGTTGAATC 295
Query 356 CGTTCTTCCCTCCTCTCCTCAAGGATAGCTGCGCTCGTATTGTCCCCAACTCCCCT 411
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 296 CGTTCTTCCCTCCTCTCCTCAAGGATATCTGCGCTCGCATTGTCCCCAATTCCCCT 351
> Ahg949864 jgi|Araly1|949864|scaffold_801751.1
Length=1383
Score = 165 bits (89), Expect = 3e-40
Identities = 104/111 (94%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 39 AAAGGGTTAACAAAGAAAGATGGGAAGCAAAACTATTCTCTCAGTCATTTTGATTGTTTC 98
||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5 AAAGGATTAAC-AGGAAAGATGGGAAGCAAAACTATTCTCTCAGTCGTTTTGATTGTTTC 63
Query 99 CCTTTGTGTTGCCATTTTTGTCACTCAAGGAGTAGCTCATATGCAAACACC 149
|||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 64 CCTTTGTGCTGCCATTTTTGTCACTCAAGGAGTAGCTCAAACGCAAACACC 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5