BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52980.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495363 jgi|Araly1|495363|fgenesh2_kg.8__1179__AT5G52980.1 1075 0.0
Ahg481612 jgi|Araly1|481612|fgenesh2_kg.4__672__AT5G52980.1 976 0.0
Ahg949873 jgi|Araly1|949873|scaffold_801760.1 941 0.0
> Ahg495363 jgi|Araly1|495363|fgenesh2_kg.8__1179__AT5G52980.1
Length=740
Score = 1075 bits (582), Expect = 0.0
Identities = 651/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 22 AAAACATCGCGGAGAACCGACCCGCCTGAACAACGTCAAGTGTTTGGACCCGATCAAAGA 81
||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 1 AAAACATCGCGGAAAACCGACCCGCCTGATCAACGTCAAGTGTTAGGACCCGATCAAATA 60
Query 82 TGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCTCTCCGCCACTGAACCGCTGC 141
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 61 TGGATCAACCCGACCCGAAAAATGGCGCTGGTCTGATTCTCTCCGCCACTGAACCGATAC 120
Query 142 GATCGTTTCTCGCTCTCGCCTCCGGTGATCGTCGTCTCTCCGACGAGCTCAGAGGAATTG 201
| ||||||||||| |||||||||||||||| |||||||||||| || ||||||| |||||
Sbjct 121 GGTCGTTTCTCGCCCTCGCCTCCGGTGATCATCGTCTCTCCGAAGAACTCAGAGAAATTG 180
Query 202 CTTCCGATCTTCGCTCGAAGAACACCATTCCGTACAAATTGCTCCGCGCTATATGGACCG 261
|| ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 181 CTACCGATCTTCGCTCGAAGAACACCGTTCCGTACAAATTGCTTCGCGCTCTATGGACCG 240
Query 262 GATCCGATCCGTCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCAATTTCGTCT 321
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GATCCGATCCATCGACCAGACCGGATTTGTTGGGACTTTTCTCCGGCTCCGATTTCGTCT 300
Query 322 TCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAACTGAGATTAG-TGAAGCTC 380
||||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||
Sbjct 301 TCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACTGAAATTGAGATT-GCTAAATCTC 359
Query 381 AGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCAAAGAAA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 AGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGTTAAAGATATAACACCCAAGAAA 419
Query 441 CAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCTCGGTTTTGGTTTACATGTTGGT 500
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 420 CAAGTCGAGGAGCCTTTCTCGTCTTACAAAGACCAGCTCGGTTTCGGTTTACATGTTGGT 479
Query 501 CTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCCTTCAGAGCTTTATTCAACCGC 560
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 480 CTTACCATGTTCACTGGATATTTGGTTGGATACGCTTCTTTTAGAGCTTTATTTAACCGC 539
Query 561 AACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTCTGGCGATGCTTGTGGAA 620
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 AACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACTAGTTTTGGCGATGCTTGTGGAA 599
Query 621 ACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTC 680
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 ACGCTTCTGTTTATAATCAAAACTTCTAAAGATGATCAGATTCAGAGCTCTAAATCGTTC 659
Query 681 ACTCAGAGCTCTCCATCGTTCACTC 705
|||||||||||||||||||||||||
Sbjct 660 ACTCAGAGCTCTCCATCGTTCACTC 684
Score = 141 bits (76), Expect = 9e-33
Identities = 85/89 (96%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 695 ATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAAAATCAATAGAACTT 754
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 653 ATCGTTCACTCAGAGCTCTCCATCGTTCACTCCCACTACTAAGAAGAATCAATAGAA-TT 711
Query 755 TG-TTTGCATTCTTTTCCTACTGAGAAAA 782
|| |||||||||| |||||||||||||||
Sbjct 712 TGGTTTGCATTCTCTTCCTACTGAGAAAA 740
> Ahg481612 jgi|Araly1|481612|fgenesh2_kg.4__672__AT5G52980.1
Length=795
Score = 976 bits (528), Expect = 0.0
Identities = 742/837 (89%), Gaps = 48/837 (6%)
Strand=Plus/Plus
Query 62 TGTTTGGACCCGATCAAAGATGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCT 121
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TGTTTGGACCCGATTAAAGATGGATCAACCCGACCCAAAAAATGGCTCTGGTCTGATTCT 60
Query 122 CTCCGCCACTGAACCGCTGCGATCGTTTCTCGCTC-TCGCCTCCGGTGATCGTCGTCTCT 180
||||| |||||||||| |||| ||||||||||| | |||| |||||||||| ||||||||
Sbjct 61 CTCCGTCACTGAACCGATGCGGTCGTTTCTCGC-CATCGCGTCCGGTGATCTTCGTCTCT 119
Query 181 CCGACGAGCTCAGAGGAATTGCTTCCGATCTTCGCTCGAAGAACA-CCATTCCGTACAAA 239
|||| || |||||||||||||||||||||||| |||||||||||| | |||| ||||||
Sbjct 120 CCGAGGAACTCAGAGGAATTGCTTCCGATCTTAGCTCGAAGAACAGCGTTTCC-TACAAA 178
Query 240 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTCGACCAGA-CCGGATTTGTTGGGACT 298
|||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||||
Sbjct 179 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTTGACGAGACCCGG-TTTATTGGGACT 237
Query 299 TTTCTCCGGCTCCAATTTCGTCTTCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACT 358
||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 TTTCTCCGGCTGCGATTTCGTCTTCACCAGTCCCAAACCAAGAGAAAAGAGCGAAGAACT 297
Query 359 GAAACTGAGATTAGTGAAGCTCAGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 418
|||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAAATGAGATTACTGAAGCTGAAAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 357
Query 419 TAAAGATATAACACCAAAGAAACAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCT 478
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 TAAAGATATAACACCCAAGAAACAAGTCGAAGAGCCTTTCTCCTCTTACAAAGACCAGCT 417
Query 479 CGGTTTTGGTTTACATGTTGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 538
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGGTTTTGGTTTACACGTGGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 477
Query 539 CTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 537
Query 599 AGTTCTGGCGATGCTTGTGGAAACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCA 658
|||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 538 AGTTTTGGCGATGCTTGTGGAAACACTTCTGTTTATAATCAAAACGTCGAAAGATGATCA 597
Query 659 GATTCAGAGCTCTAAATCGTTCACTCAGAGCTCTCCATCGTTCACTCAGAGCTCTCCATC 718
||| ||||||||||||||||| | | ||| | |||||||||| | | | |
Sbjct 598 GATCCAGAGCTCTAAATCGTT---T-A---CTC-CG-TCGTTCACTC----C-C---A-C 639
Query 719 GTTCACTCCCACTACTAAGAAAAATCAATAGAACTTTGTTTGCATTCTTTTCCTACTGAG 778
| ||| | | ||||| |||||||||||| |||||| ||| |||||||||||
Sbjct 640 -T--ACT---A--AG-AAGAA---TCAATAGAACTTGGTTTGCGTTCCCTTCCTACTGAG 687
Query 779 AAAAACTAA-GAGATTTGTAGAGAATTTAGCTTGGTACCT-GCCTGAAATG-GAAAATTT 835
||| | || |||||||||||||||||||||||||||| | |||||| || |||| |||
Sbjct 688 AAA--CGAAAGAGATTTGTAGAGAATTTAGCTTGGTAC-TAGCCTGATTTGAGAAA-TTT 743
Query 836 TTGTACCCAAAAGACAAGAAGCACAATACTGTATTTAAGTTTTGTTTAAATAAAATT 892
|||||| || | || ||||| |||| | |||||||||||||||||||||||||
Sbjct 744 TTGTACTCATATGAGAAGAAACACAG-A----ATTTAAGTTTTGTTTAAATAAAATT 795
> Ahg949873 jgi|Araly1|949873|scaffold_801760.1
Length=679
Score = 941 bits (509), Expect = 0.0
Identities = 588/626 (94%), Gaps = 6/626 (1%)
Strand=Plus/Plus
Query 62 TGTTTGGACCCGATCAAAGATGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCT 121
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2 TGTTTGGACCCGATTAAAGATGGATCAACCCGACCCGAAAAATGGCGCTGGTCTGATTCT 61
Query 122 CTCCGCCACTGAACCGCTGCGATCGTTTCTCGCTC-TCGCCTCCGGTGATCGTCGTCTCT 180
||||| |||||||||| |||| ||||||||||| | |||| |||||||||| ||||||||
Sbjct 62 CTCCGTCACTGAACCGATGCGGTCGTTTCTCGC-CATCGCGTCCGGTGATCTTCGTCTCT 120
Query 181 CCGACGAGCTCAGAGGAATTGCTTCCGATCTTCGCTCGAAGAACACC-ATTCCGTACAAA 239
|||| || |||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 121 CCGAGGAACTCAGAGGAATTGCTTCCGATCTTAGCTCGAAGAACACCGTTTCC-TACAAA 179
Query 240 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTCGACCAGA-CCGGATTTGTTGGGACT 298
|||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||||
Sbjct 180 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTTGACGAGACCCGG-TTTATTGGGACT 238
Query 299 TTTCTCCGGCTCCAATTTCGTCTTCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACT 358
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 TTTCTCCGGCTCCGATTTCGTCTTCACCAGTCCCAAACCAAGAGAAAAGAGCGAAGAACT 298
Query 359 GAAACTGAGATTAGTGAAGCTCAGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 418
|||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 299 GAAAATGAGATTACTGAAGCTGAAAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 358
Query 419 TAAAGATATAACACCAAAGAAACAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCT 478
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 359 TAAAGATATAACACCCAAGAAACAAGTCGAAGAGCCATTCTCCTCTTACAAAGACCAGCT 418
Query 479 CGGTTTTGGTTTACATGTTGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 538
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGGTTTTGGTTTACACGTGGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 478
Query 539 CTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 538
Query 599 AGTTCTGGCGATGCTTGTGGAAACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCA 658
|||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 539 AGTTTTGGCGATGCTTGTGGAAACACTTCTGTTTATAATCAAAACGTCGAAAGATGATCA 598
Query 659 GATTCAGAGCTCTAAATCGTTCACTC 684
||| ||||||||||||||||| ||||
Sbjct 599 GATCCAGAGCTCTAAATCGTTTACTC 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5