BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52990.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495365 jgi|Araly1|495365|fgenesh2_kg.8__1181__AT5G52990.1 1504 0.0
Ahg949878 jgi|Araly1|949878|scaffold_801765.1 1092 0.0
Ahg916929 jgi|Araly1|916929|Al_scaffold_0008_1680 747 0.0
Ahg481613 jgi|Araly1|481613|fgenesh2_kg.4__673__AT5G52990.1 702 0.0
> Ahg495365 jgi|Araly1|495365|fgenesh2_kg.8__1181__AT5G52990.1
Length=1238
Score = 1504 bits (814), Expect = 0.0
Identities = 921/971 (95%), Gaps = 14/971 (1%)
Strand=Plus/Plus
Query 234 ttttCGCTTCG-ATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTATCGTACAC 292
|||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 161 TTTT-GCTTCGAATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTGTCTTACAC 219
Query 293 TTGCATTGCGAAAGGAACCGTAGTTCTCGCGGAGTTCGTTT-CAAGGCAAGAGCCAGGAA 351
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 220 TTGCATTGCGAAAGGAACCGTAGTTCTCGCTGAGTTCGTTTCCAAGG-AAGAGCCAGGAA 278
Query 352 TCGAAGCTATAGCTTTACGATGCATCGAGAACACGCCTCCTCATCATTCAATGTTTTCTC 411
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 279 TCGAAGCTGTAGCTTTACGATGTATCGAGAACACGCCTCCACATCATTCAATGTTCTCTC 338
Query 412 ATACAGTTCACAAGAAGACGTATACATTCGCAATCGACGATGATTCCTTTGTTTATTTCT 471
|||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||
Sbjct 339 ATACAGTTCACAAGAAGAGGTACACATTCGCAATCGATGATGATTCGTTTGTTTATTTCG 398
Query 472 CGATTTCT-GATGAATCCATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGA 530
|||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 399 CGATTT-TGGATGAAAGTATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTCTGAGA 457
Query 531 TCAGCTATTGAAGATCTGATTAAAGACGGTGGATCTGATGTTGAGACGCTGATTAATCCT 590
|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct 458 TCAGCTATTGAAGATCTGATTAGAGACGGTGGATCTGATGTTGAAACGTTGATTAATCCG 517
Query 591 GTTTCTCATTGTCTTCAATTGAAGCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTT 650
||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 518 GTTTCGCACTGTCTTCAATTGAAGATTGATCCAATTTTCGCTGAGATTGTTGGTGTTGTT 577
Query 651 GATTTGGAATTATTGGATATGGATTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGT 710
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GATTTGG-A--ATTGGATATGGATTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGT 634
Query 711 CGAAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGG 770
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 635 CGGAATCCGAGTATTGATTCGTCTAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGG 694
Query 771 AAACCATTGAAGGCGTTGAAGAAGAAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGAT 830
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 695 AAGCCATTGAAGGCGTTGAAGAAGAAGAAGAGATTGCATAATGAAGCAAAAGGAGAAGAT 754
Query 831 TCTTGTGAGGTTGGTTCGATTCAGGAGATATCAGAGAAGAATGTTGATTTATGTGGGAAT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TCTTGTGAGGTTGGTTCGATTCAGGAGATATCAGAGAAGAATGTTGATTTATGTGGGAAT 814
Query 891 GGTAATAATGGAGTCTTACGCAAGGAACTGAGAAATGGTTTGTTGAGTGATCATCATCAT 950
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGTAACAATGGAGTCTTACGCAAGGAACTGAGAAATGGTTTGTTGAGTGATCATCATCAT 874
Query 951 AGACAAAAGGCGAAACAGATTTGGAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTC 1010
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 875 AGACAAAAGGCGAAACAGATATGGAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTC 934
Query 1011 TGCATCTGTGCTGTTTTGTTTGGAATTTGGCTTTGGATTTGTGAAGGGTTTCAATGCATT 1070
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 935 TGCATCTGTGCTGTTTTATTTGGAATCTGGCTTTGGATTTGTGAAGGGTTTCAGTGCATT 994
Query 1071 CAAGGGTAAAAGTTATCATCATCTGTGTACATCTCCAAATTCATATTCTTTGAATCTGCA 1130
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 995 CAAGGGTAAAAGTTATCATCATCTGTGTACATCTCCAAATTCATATTGTTTGAATCTGCA 1054
Query 1131 TCAAAATTTGATCATTTGACATCTT-TTTT--CTGGGTATCCGtttttttGGATCAAATC 1187
|||||||||||||||| |||||||| |||| |||||||| |||||||| ||||||||||
Sbjct 1055 TCAAAATTTGATCATT-GACATCTTCTTTTTTCTGGGTATTCGTTTTTT-GGATCAAATC 1112
Query 1188 TGATCCCTTTT 1198
|||||||||||
Sbjct 1113 TGATCCCTTTT 1123
Score = 122 bits (66), Expect = 5e-27
Identities = 85/94 (90%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 1 TTTCGTCTTCTCCAATAATGATCTCCATTTCTGTTATTTTCCCTAGAAATTTTCGCAAAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1 TTTCGTCTTCTCCAATAATGCTCTCCATTTCTGTTATTTTCCCTAGAAAAATCCGCAAAC 60
Query 61 CCTAAAAAGAGAGAGAAACATAAAAATCTCCATT 94
|||| | ||||||||||| | ||||||||||||
Sbjct 61 CCTAGAGAGAGAGAGAAA--TCAAAATCTCCATT 92
> Ahg949878 jgi|Araly1|949878|scaffold_801765.1
Length=794
Score = 1092 bits (591), Expect = 0.0
Identities = 686/731 (94%), Gaps = 9/731 (1%)
Strand=Plus/Plus
Query 257 AAGGATGATTTCAAATCCAAGTTTATTATCGTACACTTGCATTGCGAAAGGAACCGTAGT 316
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 18 AAGGATGATTTCAAATCCAAGTTTATTGTCTTACACTTGCATTGCGAAAGGAACCGTAGT 77
Query 317 TCTCGCGGAGTTCGTTT-CAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTACGATGCA 375
|||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 78 TCTCGCTGAGTTCGTTTCCAAGG-AAGAGCCAGGAATCGAAGCTGTAGCTTTACGATGTA 136
Query 376 TCGAGAACACGCCTCCTCATCATTCAATGTTTTCTCATACAGTTCACAAGAAGACGTATA 435
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 137 TCGAGAACACGCCTCCACATCATTCAATGTTCTCTCATACAGTTCACAAGAAGACGTACA 196
Query 436 CATTCGCAATCGACGATGATTCCTTTGTTTATTTCTCGATTTCT-GATGAATCCATGGAG 494
||||||||||||| |||||||| |||||||||||| |||||| | |||||| ||||||
Sbjct 197 CATTCGCAATCGATGATGATTCGTTTGTTTATTTCGCGATTT-TGGATGAAAGTATGGAG 255
Query 495 AAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGATCAGCTATTGAAGATCTGATTAAA 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGATCAGCTATTGAAGATCTGATTAAT 315
Query 555 GACGGTGGATCTGATGTTGAGACGCTGATTAATCCTGTTTCTCATTGTCTTCAATTGAAG 614
|||||||||||||||||||| ||| |||||||||| ||||| || |||||||||||||||
Sbjct 316 GACGGTGGATCTGATGTTGAAACGTTGATTAATCCGGTTTCGCACTGTCTTCAATTGAAG 375
Query 615 CTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTTGATTTGGAATTATTGGATATGGAT 674
|||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 376 ATTGATCCAGTTTTCGCGGAGATTGTTGGTGTTGTTGATTTGGAATT---GGACATGGAT 432
Query 675 TTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGAAATCCGAGTATTGATTCATCT 734
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 433 TTGGTTGGATCACCAAGGAGCGTAGCGAGAGAGAGTCGGAATCCGAGTATTGACTCATCT 492
Query 735 AAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTTGAAGAAG 794
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 493 AAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAGCCATTGAAGGCGTTGAAGAAG 552
Query 795 AAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTCA- 853
||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| ||
Sbjct 553 AAGAAGAGATTGCATAATGAAGCAAAAGGAGAAGATCCGTGTGAGGTTGGTTCGAT-CAA 611
Query 854 GGAGATATCAGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAA 913
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 612 GGAGATATCAGAGAAGAATGTTGATGTATGTGGGAATGGTAACAATGGAGTCTTACGCAA 671
Query 914 GGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTG 973
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 672 GGAACTGAGAAATGGTTTGTTAAGTGATCATCATCATAGACAAAAGGCGAAACAGATATG 731
Query 974 GAAGAAACATG 984
|||||||||||
Sbjct 732 GAAGAAACATG 742
> Ahg916929 jgi|Araly1|916929|Al_scaffold_0008_1680
Length=714
Score = 747 bits (404), Expect = 0.0
Identities = 446/466 (96%), Gaps = 3/466 (1%)
Strand=Plus/Plus
Query 614 GCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTTGATTTGGAATTATTGGATATGGA 673
|||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 252 GCTTGATCCAATTTTCGCTGAGATTGTTGGTGTTGTTGATTTTG-A--ATTGGATATGGA 308
Query 674 TTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGAAATCCGAGTATTGATTCATC 733
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 309 TTTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGGAATCCGAGTATTGATTCGTC 368
Query 734 TAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTTGAAGAA 793
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 369 TAAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAGCCATTGAAAGCGTTGAAGAA 428
Query 794 GAAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTCA 853
||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 429 GAAGAAGAGATTGCATAATGAAGGAAAAGGAGAAGATTCTTGTGAGGTTGGTTCGATTCA 488
Query 854 GGAGATATCAGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAA 913
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 489 GGAGATATCAGAGAAGAATGTTGATGTATGTGGGAATGGTAACAATGGAGTCTTACGCAA 548
Query 914 GGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 GGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATATG 608
Query 974 GAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTGTTTGG 1033
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 609 GAAGAAACATGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTATTCTATTTGG 668
Query 1034 AATTTGGCTTTGGATTTGTGAAGGGTTTCAATGCATTCAAGGGTAA 1079
||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 669 AATCTGGCTTTGGATTTGTGAAGGGTTTCAATGCATTGAAGGGTAA 714
Score = 399 bits (216), Expect = 2e-110
Identities = 240/252 (95%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 261 ATGATTTCAAATCCAAGTTTATTATCGTACACTTGCATTGCGAAAGGAACCGTAGTTCTC 320
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 1 ATGATTTCAAATCCAAGTTTATTGTCATACACTTGCATTGCGAAAGGAACCGTAATTCTC 60
Query 321 GCGGAGTTCGTTTCAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTACGATGCATCGAG 380
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GCTGAGTTCGTTTCAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTAAGATGCATCGAG 120
Query 381 AACACGCCTCCTCATCATTCAATGTTTTCTCATACAGTTCACAAGAAGACGTATACATTC 440
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 121 AACACGCCTCCTCATCATTCAATGTTCTCTCATACAGTTCACAAGAAGACATACACATTC 180
Query 441 GCAATCGACGATGATTCCTTTGTTTATTTCTCGATTTCTGATGAATCCATGGAGAAACCT 500
||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||
Sbjct 181 GCAATCGACGATGATTCCTTTGTTTCTTTCGCGATTTCTGATGAAACTATGGAGAAACCT 240
Query 501 GAATCATTCTGG 512
||||||||||||
Sbjct 241 GAATCATTCTGG 252
> Ahg481613 jgi|Araly1|481613|fgenesh2_kg.4__673__AT5G52990.1
Length=1200
Score = 702 bits (380), Expect = 0.0
Identities = 447/477 (94%), Gaps = 14/477 (3%)
Strand=Plus/Plus
Query 692 GAGTGTAGC--GAGAGAGAGTCGAAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCT 749
||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 581 GAGCGTAGCGAGAGAGAGAGTCGGAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCT 640
Query 750 GCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTT------GAAGAAGAAGAAGAGA 803
|| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct 641 GCGTTGATGCCACTTTTGGGGAAGCCATTGATGGCGTTGAAGAAGAAGAAGAAGAAGAGA 700
Query 804 TTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTC-AGGAGATATC 862
|||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||
Sbjct 701 TTGCATAATGAAGCAAAAGGACAAGATTCGTGTGAGGTTGGTTCGA-TCAAGGAGATATC 759
Query 863 AGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAAGGAACTGAG 922
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 760 AGAGAAGAATGTTGATGTATGTGGGAATGGTAACAATGGAGTCTTACGCAAGGAACTGAG 819
Query 923 AAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTGGAAGAAACA 982
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 820 AAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATATGGAAGAAACA 879
Query 983 TGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTGTTTGGAATTTGGCT 1042
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 880 TGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTATTTGGAATCTGGCT 939
Query 1043 TTGGATTTGTGAAGGGTTTCAATGCATTCAAGGGTAAAAGTTATCATCATCTGTGTACAT 1102
|||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 940 TTGGATTTGTGAAGGGTTTCAATGTATTCAAGGGTAAAAGTTATCATC-T--GTGTACAT 996
Query 1103 CTCCAAATTCATATTCTTTGAATCTGCATCAAAATTTGATCATTTGACATCTTTTTT 1159
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 997 CTCCAAATTCATATTGTTTGAATCTGCATCAAAATTTGATCATT-GACATCTTTTTT 1052
Score = 621 bits (336), Expect = 4e-177
Identities = 395/423 (93%), Gaps = 6/423 (1%)
Strand=Plus/Plus
Query 234 ttttCGCTTCG-ATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTATCGTACAC 292
|||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 161 TTTT-GCTTCGAATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTGTCTTACAC 219
Query 293 TTGCATTGCGAAAGGAACCGTAGTTCTCGCGGAGTTCGTTTC-AAGGCAAGAGCCAGGAA 351
|||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 220 TTGCATTGCGAAAGGAACCGTAGTTCTCGCTGAGTTCGTTTCCAAGG-AAGAGCCAGGAA 278
Query 352 TCGAAGCTATAGCTTTACGATGCATCGAGAACACGCCTCCTCATCATTCAATGTTTTCTC 411
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 279 TCGAAGCTGTAGCTTTACGATGTATCGAGAACACGCCTCCACATCATTCAATGTTCTCTC 338
Query 412 ATACAGTTCACAAGAAGACGTATACATTCGCAATCGACGATGATTCCTTTGTTTATTTCT 471
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 339 ATACAGTTCACAAGAAGACGTACACATTCGCAATCGATGATGATTCGTTTGTTTATTTCG 398
Query 472 CGATTTCTG-ATGAATCCATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGA 530
|||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 399 CGATTT-TGGATGAAAGTATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTCTGAGA 457
Query 531 TCAGCTATTGAAGATCTGATTAAAGACGGTGGATCTGATGTTGAGACGCTGATTAATCCT 590
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 458 TCAGCTATTGAAGATCTGATTAGAGACGGTGGATCTGATGTTGAAACGTTGATTAATCCT 517
Query 591 GTTTCTCATTGTCTTCAATTGAAGCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTT 650
||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 518 GTTTCGCATTGTCTTCAATCAAAGCTTGATCCAGTTTTCGCGGAGATTGTTGGTGTTGTT 577
Query 651 GAT 653
|||
Sbjct 578 GAT 580
Score = 172 bits (93), Expect = 5e-42
Identities = 116/126 (92%), Gaps = 5/126 (4%)
Strand=Plus/Plus
Query 1235 TTTGATTTTTAAAGTCGCAAAAAGTGTTGTTTCCAGGAGGAAAACTAGGG----TATAGA 1290
||| |||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1076 TTTTATTTTTAAAGTCACAAAAAGTGTTGTTTCCAGGAGG-AAACTAGGGTATATATAGG 1134
Query 1291 TTGAATCCTGGTTTACATGTTAATGATGTTGTTAATTGTACTTTGGAAGTTAAATCATTC 1350
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1135 TTGAATCCTGGTTTACATGTTAGTGATGTTGTTCATTGTACTTTGGAAGTTAAATCATTC 1194
Query 1351 ACAAGC 1356
||||||
Sbjct 1195 ACAAGC 1200
Score = 128 bits (69), Expect = 1e-28
Identities = 86/94 (91%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 1 TTTCGTCTTCTCCAATAATGATCTCCATTTCTGTTATTTTCCCTAGAAATTTTCGCAAAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 1 TTTCGTCTTCTCCAATAATGCTCTCCATTTCTGTTATTTTCCCTAGAAAATTCCGCAAAC 60
Query 61 CCTAAAAAGAGAGAGAAACATAAAAATCTCCATT 94
|||| | ||||||||||| | ||||||||||||
Sbjct 61 CCTAGAGAGAGAGAGAAA--TCAAAATCTCCATT 92
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5