BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53040.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331662 jgi|Araly1|331662|fgenesh1_pm.C_scaffold_8001005 1053 0.0
> Ahg331662 jgi|Araly1|331662|fgenesh1_pm.C_scaffold_8001005
Length=765
Score = 1053 bits (570), Expect = 0.0
Identities = 706/772 (91%), Gaps = 8/772 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTCGTCAAAACATTCCTCTGTTTTTAACTATTCTGCTCTGTTTCTATCACTGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAGTTCGTCAAAACATTCCTCTGTTTTTAACTATTCTGCTCTGTTTCTATCACTGATT 60
Query 61 CTTCAACAAATGGATCAGAACTCTCTTCATCATCTCGATTCTCCAAAAATCGAAAACGAG 120
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||
Sbjct 61 CTTCAACAAATGGATCATAACTCTCTTCATCAACTCGATTCTCCGAAAATCGAAAACCAG 120
Query 121 TATGAACCAGATTCGTTATACGACATGTTAGATAAGTTGCCTCCGCTTGATTCTCTCCTA 180
||||||||||||||||| ||||||||| | || ||||| ||||| || || ||||||||
Sbjct 121 TATGAACCAGATTCGTTGTACGACATGCTCGAAAAGTTACCTCCACTCGAGACTCTCCTA 180
Query 181 GATATGGAAGATTTGAAACCAAATGCAGGGTTGCACTTTCAGTTCCATTACAATAGCTTT 240
|| | |||||| ||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 181 GACACAGAAGATCTGAAACCAAATGCGGGGTTGCATTTTCAGTTTCAGTACAATAGCTTT 240
Query 241 GAAGATTTCTTCGAAAACATTGAAGTGGATAACACAATTCCATCTGATATTCACTTGTTG 300
|| ||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||
Sbjct 241 GACGATTTCTTCGAAAACATCGAAGTGGATATCACAATTCCATCTGATGTTCATTTGTTG 300
Query 301 ACACAAGAGCCCTACTTCTCAAGTGACTCCTCTTCCTCTTCACCATTGGCTATCCAAAAC 360
|| ||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 301 ACTCAAGAACCCTACTTCTCAAGTG-----GC-TCCTCTTCACCATTGGCTATCCAAAAC 354
Query 361 GACGGTCTCATTTCCAACGTGAAAGTTGAAAAG-GTAACAGTTAAGAAGAAGAGGAACCT 419
||| | |||| ||| ||| || |||||||||| | |||||| ||||||||||| |||||
Sbjct 355 GACTGCCTCAGTTCTGACGAGAGAGTTGAAAAGAG-AACAGTGAAGAAGAAGAGAAACCT 413
Query 420 TAAGAAAAAGAGGCAAGACAAATTGGAGATGTCTGAGATCAAACAATTTTTCGATAGGCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TAAGAAAAAGAGGCAAGACAAATTGGAGATGTCTGAGATCAAACAATTTTTCGATAGGCC 473
Query 480 GATCATGAAAGCGGCTAAAGAACTGAACGTGGGACTCACTGTGTTGAAGAAGCGATGCAG 539
|| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 AATAATGAGAGCGGCTAAAGAACTGAACGTGGGACTCACCGTGTTGAAGAAGCGATGCAG 533
Query 540 GGAATTAGGAATTTACCGGTGGCCTCACCGGAAGCTCAAGAGTCTAAACTCTCTTATAAA 599
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 534 GGAATTAGGAATTTACCGGTGGCCTCACCGGAAGCTCAAGAGTCTGAACTCTCTCATCAA 593
Query 600 GAATCTCAAGAATGTTGGAATGGAAGAGGAAGTGAAGAACTTGGAGGAACATAGGTTTCT 659
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 594 GAATCTCAAGAGTGTTGGAATGGAAGAAGAAGTGAAGAATTTGGAGGAACATAGGGTTCT 653
Query 660 TATTGAACAAGAACCTGATGCAGAACTCAGTGATGGAACCAAGAAGCTAAGGCAAGCTTG 719
||| || |||||||| ||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 654 TATAGAGCAAGAACCGGATGCTGAGCTTAGTGATGGAACAAAGAAGCTAAGGCAAGCTTG 713
Query 720 TTTCAAAGCCAATTATAAGAGAAGAAAATCACTTGGTGATGATTATTATTGA 771
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 714 TTTCAAAGCCAATTATAAGAGAAGAAAGTCACTTGGTGATGATTATTATTGA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5