BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53045.1

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949883 jgi|Araly1|949883|scaffold_801770.1                        507    5e-143


> Ahg949883 jgi|Araly1|949883|scaffold_801770.1
Length=331

 Score =  507 bits (274),  Expect = 5e-143
 Identities = 313/332 (94%), Gaps = 1/332 (0%)
 Strand=Plus/Plus

Query  52   GAAGGAAGGAAGGAGCAAATATGGCTGCCACTGTTCCTGCAACTACTCGTTCTGATCAAA  111
            |||| |||||||||||||| |||||||| | |||||||||||||||||||||||| ||||
Sbjct  1    GAAGAAAGGAAGGAGCAAAAATGGCTGCGATTGTTCCTGCAACTACTCGTTCTGACCAAA  60

Query  112  CATGGGATTTTAGTTGTAATTTGGATGTGAGTTTTGAATCAGAAGAACATGCTTTGATTG  171
            | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  61   CTTGGGATTTTAGTTGTAATTTGGATGTGAATTTTGAATCGGAAGAACATGCTTTGATTG  120

Query  172  CTTATACATCATTGGCTGTTGATAAAGAGTTGCAGCCTGATAAGGTGAGAAGAGTTATGT  231
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTTACACATCTTTGGCTGTTGATAAAGAGTTGCAGCCTGATAAGGTGAGAAGAGTTATGT  180

Query  232  CAGTATCAAACAACAAGCTTTCTGTGCACTTTGAAGCAATAGAGGCAAGGCTGCTTCGCG  291
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  181  CAGTATCAAACAACAAGCTTTCTGTGCATTTTGAAGCAATAGAGGCAAGGCTTCTTCGCG  240

Query  292  CTTCGTTCTCTGCATTTGTAGACGTTCTTACACTGGCCACAAGAACAATTCAAGAATTTG  351
            ||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct  241  CTTCGTTCTCTGCGTTTGTAGACGTACTTACGCTAGCCACAAGAACAATTCAAGAATTTG  300

Query  352  GTCAAAAGTAAAACACCAATATGAAGAGAAAA  383
            | |||||||||||||||||| |||||| ||||
Sbjct  301  GGCAAAAGTAAAACACCAATGTGAAGA-AAAA  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21214507484


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5