BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53050.2
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497327 jgi|Araly1|497327|fgenesh2_kg.226__4__AT5G53050.2 2026 0.0
Ahg495371 jgi|Araly1|495371|fgenesh2_kg.8__1187__AT5G53050.3 1943 0.0
> Ahg497327 jgi|Araly1|497327|fgenesh2_kg.226__4__AT5G53050.2
Length=1395
Score = 2026 bits (1097), Expect = 0.0
Identities = 1284/1374 (93%), Gaps = 14/1374 (1%)
Strand=Plus/Plus
Query 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 33 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 92
Query 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 93 CCGCAATCAAACTCTTCTACAGAACGTACGGTCACGGTCCTATCAAAGCTCTTCTCATCA 152
Query 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 153 TAGGTTTAGCCGGAACCCATGAATCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 212
Query 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382
|||||||||||||| | | |||||||||||| |||||||||||||| |||||||
Sbjct 213 ATAAACCCAACGAC---G-T-----CGACGGAGGAATCGTTTCCGATGATTCAGGCATCG 263
Query 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442
|||| || ||||| || ||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 264 AGGTCTGTGCTTTTGACAATCGTGGTATGGGTCGGAGCTCTATACCTACCCACAAATCTG 323
Query 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502
||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 324 AGTACTCAACAACGATAATGGCAAATGATTCAATTAATTTGTTAGATCATTTGGGTTGGA 383
Query 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 384 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 443
Query 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622
||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||
Sbjct 444 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 503
Query 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682
| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 504 GTTTCCCGAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 563
Query 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 564 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 623
Query 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 624 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 683
Query 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 684 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACACTTGTTGGTTAC 743
Query 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922
|||||||||||||| |||||| | | |||||||||||||||| ||||||||||||||||
Sbjct 744 ACAAAATCACAAAACCAGAGATCGTAGTAATCCGCTCGGCTGGGTTTCTTGTCTCAGTCA 803
Query 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 863
Query 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 864 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 923
Query 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 924 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAC 983
Query 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 984 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATTTCAAGAAGAGACTAGCAC 1043
Query 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222
|||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 1044 TGATTAGAAGCTCACCGGAAGGCAAGAATGCCGTCTCTCCCGCACATTTCATAGCGGAAA 1103
Query 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1104 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1163
Query 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342
|||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 1164 GAAGAGCTTTTAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTTACATAACAACAAC 1223
Query 1343 CCTTCACATATCAATTTGTCGACCAAATATTTTCATACAAGCAATGAGCCAGTTCTTCAA 1402
|| |||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1224 CCATCACATTTCAATTTGTCGACCAAATATATTCATACAAGCAATGAGACATTTCTTCAA 1283
Query 1403 TGATCAAGCTGATGAGACATAAGGGCTTAAAGATAT-TATTGCTGCAAATAGAGGCTAAG 1461
||||||||||||||| ||||||| ||||||||||| | |||||||||| ||| ||||||
Sbjct 1284 TGATCAAGCTGATGAAACATAAGAGCTTAAAGATAAGT-TTGCTGCAAACAGAAGCTAAG 1342
Query 1462 AGAAGGAGACAGTGCTTTTACATGGATAG-G-TGATACAAACTGTTGATATATA 1513
||||| |||||| ||||| ||||||| || | | ||||||||||||||||||||
Sbjct 1343 AGAAGAAGACAGAGCTTTCACATGGA-AGAGATTATACAAACTGTTGATATATA 1395
> Ahg495371 jgi|Araly1|495371|fgenesh2_kg.8__1187__AT5G53050.3
Length=1568
Score = 1943 bits (1052), Expect = 0.0
Identities = 1168/1226 (95%), Gaps = 0/1226 (0%)
Strand=Plus/Plus
Query 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 60
Query 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCAATCAAAATCTTCTACAGAACCTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 120
Query 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 TAGGTTTAGCAGGAACCCATGAGTCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 180
Query 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382
|||||||||||||||| ||||| ||||||||||||||||||||||||| ||| || ||||
Sbjct 181 ATAAACCCAACGACGACGATGAAGACGACGGAGGAATTGTTTCCGATGGTTCTGGTATCG 240
Query 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 241 AGGTTTGCGCTTTCGATAATCGTGGGATGGGTCGGAGCTCTGTGCCTACCCACAAATCCG 300
Query 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 360
Query 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 361 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 420
Query 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622
||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||
Sbjct 421 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 480
Query 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682
| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GTTTCCCCAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 540
Query 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 600
Query 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 660
Query 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 720
Query 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 721 ACAAAATCACAAAACCAGAGATCGAAGTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 780
Query 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 840
Query 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 841 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 900
Query 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 901 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAAGAC 960
Query 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 961 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATCTCAAGAGGAGACTAGCAT 1020
Query 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222
|||||| ||||||| | ||||||||||||| || |||||| |||||||| ||||||||||
Sbjct 1021 TGATTACAAGCTCATCAGAAGGCAAGAATGCCGTCTCTCCCGCACATTTTATAGCGGAAA 1080
Query 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1140
Query 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342
||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 1141 GAAGAGCATTCAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTCACATAACAACAAC 1200
Query 1343 CCTTCACATATCAATTTGTCGACCAA 1368
||||||||| ||||||||||||||||
Sbjct 1201 CCTTCACATTTCAATTTGTCGACCAA 1226
Score = 141 bits (76), Expect = 2e-32
Identities = 91/98 (93%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 1544 TCCATGTCAAACATTTGTTCTACGAACATAATATGTAAAGATAAGACATCGAAATCTCAA 1603
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1447 TCCATGACAAACATTTGTTCTACGAATGTAATATGTAAAGATAAGACATCGAAATCTCAA 1506
Query 1604 ATATAGACTCGTATGTTTTTGTGTACCTATGGAACATA 1641
|||||||| ||||||||| |||||||||| |||||||
Sbjct 1507 -TATAGACTTGTATGTTTTCGTGTACCTATAGAACATA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5