BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53060.1
Length=2528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495374 jgi|Araly1|495374|fgenesh2_kg.8__1190__AT5G53060.1 3696 0.0
> Ahg495374 jgi|Araly1|495374|fgenesh2_kg.8__1190__AT5G53060.1
Length=2419
Score = 3696 bits (2001), Expect = 0.0
Identities = 2302/2441 (94%), Gaps = 45/2441 (2%)
Strand=Plus/Plus
Query 63 TTTTTGCATTGCACCGATTCGCCTCCATCGATTTTGGACATTCTT-GAATTCTCCCTCCA 121
|||||||||||||||||||| ||||||||||||||||| ||| || |||||| |||||||
Sbjct 1 TTTTTGCATTGCACCGATTCACCTCCATCGATTTTGGATATT-TTCGAATTCACCCTCCA 59
Query 122 AGTA-TT-CCTGTGAAATTGACCGGAAAGTTCCTTCCTTTTTCAATTTCCGGTAAAAAGG 179
|| | || ||| |||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 60 AG-ATTTCCCT-TGAAATTGACTGGAAAGTTTCTTCCTTTTTCGATTTCCGGTAAAAAGG 117
Query 180 AAAGTAATTGGGTACTGTAGACTTCCTTCTAGGG-C-TTGTGAACTTTCTAATCCTTCAG 237
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 118 AAAGTAATTGGGCACTGTAGACTTCCTTCTAGGGTCTTTGTGAACTTTCTAATCCTTTAG 177
Query 238 -AAAACCCTCGAATTCGAAAAATTTGCTGCGAGATTGATAAATGACTAGTTAAAGATTTG 296
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||
Sbjct 178 AAAAACCCTCGAATTCGAAAATTTTGCGGCGAGATTGATAAATGACTAGTT-AAGA-TTG 235
Query 297 AACTTTGATTTCTGGGTTTGCGATTTTATTCAAATGGAGAGATCTAGATCCAAGAGAAAC 356
|||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 236 AACTTTGATTTCTGGGTTTGCG-----------ATGGAGAGATCTAGATCGAAGAGAAAC 284
Query 357 TACCACTATGACCAAGACTATGACGGAGATTCCATGCCTAGGTCTAAACCTCGCTACAAC 416
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 285 TACCACTATGACCAAGACTATGATGGAGATTCTATGCCCAGGTCTAAACCTCGCTACAAC 344
Query 417 AATAATTACCACTTTGGTGGTGGC---GGCGGAGGAAATAACAGATACCGTGGCGGCGGC 473
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 345 AATAATTACCACTTTGGTGGCGGCGGAGGAGGAGGAAATAACAGATACCGTGGCGGCGGT 404
Query 474 GGTGGTGGAGGTGGAAATGGCCGGCCATCGAAGTCTCATCCTGAAACGATGGCAACAACG 533
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 405 GGTGGTGGTGGTGGAAATGGCCGGCCATCGAAGTCTCACCCTGAAACGATGGCAACGACG 464
Query 534 ACTTATCGAATCCTCTGTCACGACGCTAAAGCAGGAGGTGTTATTGGTAAATCCGGGACA 593
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 465 ACTTATCGAATCCTCTGTCATGACGCTAAAGCAGGAGGCGTCATTGGTAAATCCGGGACA 524
Query 594 ATTATCAAATCTATAAGGCAACACACCGGCGCGTGGATTAACGTGCACGAGCTAGTTCCT 653
|| |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 525 ATCATCAAATCGATTAGGCAACACACCGGCGCGTGGATTAACGTGCATGAGCTAGTTCCT 584
Query 654 GGAGATGCAGAGCGTATCATTGAGATTTCTGATAATCGTAGGCGTGACCCTGATGGGAGA 713
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 585 GGAGACGCAGAGCGTATCATTGAGATTTCTGACAATCGTAGGCGTGACCCTGATGGGAGA 644
Query 714 ATGCCGTCTTTCTCTCCTGCTCAAGAGGCTTTGTTTAGTGTTCATGACAGGATTTTGGAG 773
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATGCCGTCATTCTCTCCTGCTCAAGAGGCTTTGTTTAGTGTTCATGACAGGATTTTGGAG 704
Query 774 AGTGAAGCTCAGTTTGGTTATGGTGGACCTCCGCCGGAAGAGGAGGAGGATTACGGTGGA 833
|||||| |||||||||| ||||||||| | | ||||||||||||||||||||||||||||
Sbjct 705 AGTGAACCTCAGTTTGGGTATGGTGGAGCACAGCCGGAAGAGGAGGAGGATTACGGTGGA 764
Query 834 GTTAGACCTGGTGGAGGGAGAGTTGTGACTAGATTAGTGGTTTCTAGGATGCATGTTGGT 893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 765 GTTAGACCTGGTGGAGGGAGAGTTGTGACTAGGTTAGTGGTTTCTAGGATGCATGTTGGT 824
Query 894 TGTTTGTTGGGTAAAGGTGGGAAGATTATTGAGCAGATGAGGATTGAAACTAAGACTCAT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGTTTGTTGGGTAAAGGTGGGAAGATTATTGAGCAGATGAGGATTGAAACTAAGACTCAT 884
Query 954 ATTCGGATTCTTCCAAGAGAAAGTAACTTACCTCGTTGTGTTTCACTCTCTGAAGAGATT 1013
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATTCGGATTCTGCCACGGGAAAGTAACTTACCTCGTTGTGTTTCACTCTCTGAAGAGATT 944
Query 1014 GTTCAGATTGTAGGTGAACTAAATGCAGTGAAAAACGCTTTAGC-CATTGTATCATCTCG 1072
|||||||||||||||||||| | ||||||||||||||||||| | |||||||||||| ||
Sbjct 945 GTTCAGATTGTAGGTGAACTTAGTGCAGTGAAAAACGCTTTA-CTCATTGTATCATCGCG 1003
Query 1073 TCTAAGGGAGAGTCAGCATCGTGATCGGAGTAATTTCCAAGGGCGTTCACATTCACCAGA 1132
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TCTAAGGGAGAGTCAACATCGTGATCGGAGTAATTTCCAAGGGCGTTCACATTCACCAGA 1063
Query 1133 ACGGTC-GTTTGCAGCTGCGGGGGATGATTACATGCCACAGCTAAGAAGACAATCATCCG 1191
||| | |||||||||||| |||||||||||||| |||||| |||||||||||||| |
Sbjct 1064 GCGG-CAGTTTGCAGCTGCTGGGGATGATTACATCCCACAG---AGAAGACAATCATCAG 1119
Query 1192 ATAGGTTTCCTCGTGGTAATTTTAGAAATAACAACTTCAGTTCTCGCCAGTCCAACTATG 1251
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1120 ATAGGTTTCCTCGTGGTAATTATAGAAATAACAACTTCAGTTCTCGCCAATCCAACTATG 1179
Query 1252 CAGAAGAAGCTCCAGCAGTTCCAGTTGGTGAGAATGTCTACTCCGAAGAGCTTGTGTTCC 1311
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1180 CTGAAGAAGCTCCAGCAGTTCCAGTTGGTGAGAATGTCTACACCGAAGAGCTTGTGTTCC 1239
Query 1312 AGATTCTCTGCCCAGCTGACAAGATTGTTCGGGTTGTTGGGGAATCGCAAGGAATAATT- 1370
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1240 AGATTCTCTGCCCAGCTGACAAGATTGTTCGGGTTATTGGGGAATCGCAAGGAAT-ATTA 1298
Query 1371 GATTTGCTTCAGAACGAGATCGGCGTGGACGTTAGAGTATCTGACCCAGTTGCTGGATCT 1430
||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1299 GATTTGCTTCAAAATGAGATTGGCGTGGACGTGAGAGTATCTGACCCAGTTGCTGGATCT 1358
Query 1431 GATGAACAGATAATCACCATTTCTTCGGAAGAGGCACCTGATGATCCATTTTTCCCTGCT 1490
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1359 GATGAACAGATAATCACCATTTCTTCGGAAGAGGCTCCTGATGATCCATTTTTCCCTGCT 1418
Query 1491 CAAGAAGCCTTGTTGCACATTCAAACTCAGATCATAGATCTTATTCCGGATAAAGATAAT 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 CAAGAAGCCTTGTTGCACATTCAAACTCAGATCATAGATCTTATTCCGGATAAAGATAAT 1478
Query 1551 TTAATAACAACAAGATTACTTGTCCCATCTAGAGACTCTATATGTTTGGAAGGGAAAGCA 1610
||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1479 TTAATAACAACGAGATTACTTGTCTCATCTAGAGACTCCGTATGTTTGGAAGGGAAAGCA 1538
Query 1611 GGATCAGTATCTGAGATATCACGATTAACTGGAACAAGCGTACAAATTCTAGCTAGGGAA 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GGATCAGTATCTGAGATATCACGATTAACTGGAACAAGCGTACAAATTCTAGCTAGGGAA 1598
Query 1671 GAAATTCCCCGATGTGCTTCTATCAATGATGTTGTTATACAGATTACTGGCGAGATCAGA 1730
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1599 GAAATTCCCCGATGTGCTTCTATCAATAATGTTGTTATACAGATTACTGGCGATATCAGA 1658
Query 1731 GCTGCTCGGGAAGCACTTGTTGAATTAACATTACTATTGAGGAGTCATATGTTCAAGGAG 1790
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1659 GCAGCTCGGGATGCACTTGTTGAATTAACGTTACTATTGAGGAGTCATATGTTCAAGGAG 1718
Query 1791 CTCTCTCAAAAGGAGACACCACCAGCTTCCACATCCACAACTGGCCCTCTCGAAGGTGTT 1850
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1719 CTCTCTCAAAAGGAGACACCACCAGCTTCCACATCCACAACTGGCCCTCTTGAAGGTGTT 1778
Query 1851 GCAGGAGTAATGGAGGTAGCTTCATCAAATAACACAATTCAATCTCGTGAAGGTCCTACT 1910
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1779 GCAGGAGTAATGGAGGTAGCTTCATCAAATAACACAATTCAATCCCGTGAAGGTCTTACT 1838
Query 1911 AGTTCGAATCTGAACTTGCAGCAAGTTAGCACAATCTTGCCACAGTTTAAGGAAGGTTTC 1970
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1839 GGTTTGAATCTGAACTTGCAGCAAGCTAGCACAATCTTGCCACAGTTTAAGGAAGGTTTT 1898
Query 1971 GGATCAGTTGCAAAGGCGGGTGAAAGTGAACACCGGGAAGAGGTTCCTGTCACGACAAGC 2030
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1899 GGATCAGTTGCAAAGGCGGGTGAAAGTGAACACCGGGAGGAGGTTCCTGTCACGACAAGC 1958
Query 2031 AGAATGGCGGTACCACTTGTTACTAGAAGCACTCTTGAAGTTGTCTTACCAGAGGCGGTT 2090
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1959 AGAATGGCAGTGCCACTTGTTACTAGGAGCACTCTTGAAGTTGTCTTACCAGAGGCTGTT 2018
Query 2091 GTTCCTAAGCTCGTTACGAAATCAAGAAACAAGCTTGCACAAATCAGTGAGTGGTCTGGA 2150
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GTTCCTAAGCTTGTTACGAAATCAAGAAACAAGCTTGCACAAATCAGTGAGTGGTCTGGA 2078
Query 2151 GCTAGTGTAACCATAGTTGAAGACAGACCAGAAGAAACACAGAATATCATTCGAATTTCG 2210
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2079 GCTAGTGTAACCTTAGTTGAAGACCGACCAGAAGAAACACAGAATATCATTCGAATTTCG 2138
Query 2211 GGTACACCCGAGCAAGCAGAGAGAGCTCAGAGTTTGCTTCAAGGCTTCATTTTGAGCATA 2270
|||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 2139 GGTACACCCGAGCAGGCAGAGAGAGCACAGAGCTTGCTTCAAGGCTTCATCTTGAGCATA 2198
Query 2271 CAAGAGGATGGACCGTGAACTTGGACCAGATCATCAGTCAACACAGAGATGAAGATCAAG 2330
||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 2199 CAAGAAGATGGACCGTGAACTTGGACCAGATCACCGGTCAACACAGAGAAGAAGATCAAG 2258
Query 2331 AAACTGAGAAATGTGGAGTTATGTATGACTTGTTGAATATTAGGATTTCAGTAAGCAGTA 2390
|||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 2259 AAACTGAGAAATGTGGAGTTATGTATGAATTGTTGAATATTAGGATTTAAGTGGGCAGTA 2318
Query 2391 GT--TT--AGATGAACATTCCACATTTTGACCATCACTCTTTGGTTTCTA-T------GT 2439
|| || |||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 2319 GTAGTTTTAGATGAACATTCTACATTTTGACCATCACTCTTTGGTTTCTACTTTCTATGT 2378
Query 2440 TGTCTATTAGTCTTCTTTGTTTACATTGTTCTGTAACTTAT 2480
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 TGTCTATTAGTCTTCTTTGTTTACATTGTTCTGTAACTTAT 2419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95301792990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5