BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53070.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949887 jgi|Araly1|949887|scaffold_801774.1 1127 0.0
> Ahg949887 jgi|Araly1|949887|scaffold_801774.1
Length=706
Score = 1127 bits (610), Expect = 0.0
Identities = 676/708 (95%), Gaps = 4/708 (1%)
Strand=Plus/Plus
Query 122 AATATTGTTGAATCGAGAAAATGGCTTATGTTGGGCAAAGTAGAAACGTGATTCGGCATG 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATATCGTTGAATCGAGAAAATGGCTTATGTTGGGCAAAGTAGAAACGTGATTCGGCATG 60
Query 182 TAGTCT-CGAGAGGAACAGCTTATCACAAGTATGAAAATGCGATTCATCATCCTCTCCTT 240
|||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TAGT-TACGAGAGGAACAGCTTATCACAAGTCTGAAAATGCGATTCATCATCCTCTCCTT 119
Query 241 TTCGCTTGTCAAGGAGTTCGATACAGAAAATTAGAAGTTATTCTTACAACGGGCATTGAG 300
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||| || |||
Sbjct 120 TTCGCTTGTCAAGGAGTTAGATACAGGAAATTGGAAGTTATTCTTACAACGGGTATAGAG 179
Query 301 AAGCTTGGCAAAGCTGGTGAGACTGTGAAGGTAGCTCCTGGATACTTCAGGAATCACCTT 360
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 180 AAGCTTGGCAAAGCCGGTGAGACGGTGAAGGTAGCTCCTGGATACTTCAGGAATCATCTT 239
Query 361 ATGCCAAAACTTCTTGCTGTGCCTAACATTGACAAGTATGCTTATCTCATCCGAGAGCAA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGCCGAAACTTCTTGCTGTGCCTAACATTGACAAGTATGCTTATCTCATCCGAGAGCAA 299
Query 421 CGCAAGATGTATAATCATGAAGAAGTAAAGGAGGAGGTTAAGGTGGTTCATAAAACTTCT 480
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 300 CGCAAGATGTATAATCATGAAGAGGAAAAAGAGGAGGTTAAGGTGGTTCATAAAACTTCT 359
Query 481 GAAGTCCAGACAAAAGAGTATGAAAAGGCTGCAAAGCGTCTGGCGAATGCTAATTTGGTA 540
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 360 GAAGTCCAGACAAAGGAGTATGAAAAGGCCGCAAAGCGCCTGGCGAATGCTAATTTGGTA 419
Query 541 TTGAGGAAGTTAGTTGACAAGGAAAAGTTCAAAAACCGCTCCTCAAAAGACGACAAACCT 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 TTGAGGAAGTTAGTTGATAAGGAAAAGTTCAAAAACCGCTCCTCAAAAGACGATAAACCT 479
Query 601 GATGTTCAAACTCCTATCACAAAGGAAGAGATAGTCTCTGAGGTGGCGAGGCAGCTCTGT 660
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGTACAAACTCCTATCACAAAAGAAGAGATAGTCTCTGAGGTGGCGAGGCAGCTCTGT 539
Query 661 GTGAAGATTGATCCAGACAATGTGGTTTTAGCGGCGCCTTTGGAAACTTTTGGCGAGTAC 720
|||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |||
Sbjct 540 GTGAAGATTGATCCAGACAACGTAGTTTTACCGGCGCCTTTGGAAACTTTTGGCGAATAC 599
Query 721 GAGGTGCCTCTTAAATTCCCCAAGACAATTCCTTTGCCACAAGGAACTGTTCAATGGATT 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGGTGCCTCTGAAATTCCCCAAGACAATTCCTTTGCCACAAGGAACTGTTCAATGGATT 659
Query 781 CTCAAAGTCAAAGTCCGTGGCCATTAAA-TCTTCCACCTTTGAAAGTC 827
|||||||||||||||||||||||||||| ||| |||| |||| |||||
Sbjct 660 CTCAAAGTCAAAGTCCGTGGCCATTAAAATCT-CCACATTTGGAAGTC 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5