BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53080.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495375 jgi|Araly1|495375|fgenesh2_kg.8__1191__AT5G53080.1 2649 0.0
> Ahg495375 jgi|Araly1|495375|fgenesh2_kg.8__1191__AT5G53080.1
Length=1861
Score = 2649 bits (1434), Expect = 0.0
Identities = 1716/1848 (93%), Gaps = 36/1848 (2%)
Strand=Plus/Plus
Query 64 GTCGGCGAAATTGCGGCCACGAGAACGAAGAGC--TTCACACTACCTCCAATGGTGTTCT 121
||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 27 GTCGGCGGAACCGCGGCCACGAGAACGAAGAGCTTTTCACACTACCTCCGATGGTGTTCT 86
Query 122 CTAACTCTCTCCTCTCTTCGACCACTTCGCTTACCACATGGGCAAATCAATCAAGTTCTC 181
||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||
Sbjct 87 CTATCTCTCTCCTCTCTTCGACCACTTCGCTCACCACATGGGCGAATCAATTAAGCTCTC 146
Query 182 AGTCAAGTCTTTCCCCGAGATATTCGACATGGC-A-GT-GTGTTTGTTTACGTAATCAGA 238
|||| || | | |||||| |||||||||||| | | |||||||||| ||||||||||
Sbjct 147 AGTCTGGTAGTGCACCGAGAGATTCGACATGGCAATATGGTGTTTGTTTCCGTAATCAGA 206
Query 239 AACGCAAACCTAAGCTCTACTTGATTCCCGCTCGCCATTTTTTATCGACTCCAATTGATT 298
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 207 AACGCAAACCTAAGCTCTACTTGATTCCCGCCCGCCATTTTTTATCGACTCCTATTGAGT 266
Query 299 CAGTCTCCTCCTCCTCAATAACG-GCTTCACGTT-ATGCTACTTCTGGCGTTTCTGAAGT 356
||| | | ||||||| | || | |||||| ||| |||||||||||||||||||||||||
Sbjct 267 CAG--T-CACCTCCTC-AGAAAGTGCTTCA-GTTCATGCTACTTCTGGCGTTTCTGAAGT 321
Query 357 TCAAAGGTCTACTTCGAGCAACAATGTTACTGAGATGGAAGAGTTTGAGATGGAGTTGCA 416
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 322 TCAAAGGTCTACTTCAAGCAACAATGTTAATGAGATGGAAGAGTTTGAGATGGAGTTGCA 381
Query 417 AGAGTTGTTTAATGAAGTCAAAAG-TATGGTGAAGATTGGGAAGGAAAGTGACGCAATGG 475
||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||||||
Sbjct 382 AGAGTTGTTTAATGAAGTC-AAGGCTATGGTGAAGATTGGCAAGGAAAGAGACGCAATGG 440
Query 476 ACCTTCTTCGAGCGAATTATGTTGCTGTGAAAGAAGAGCTGGATTCGGGTTTGAAAGGTA 535
|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 441 ACCTACTTCGAGCGAATTATGTTGCTGTGAAAGAAGAAATGGATTCCGGTTTGAAAGGTA 500
Query 536 TCGAACAAGCTGCTGTTCTTGACATCATTGCTTTGGGGTATATGGCTGTTGGAGACTTGA 595
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 501 TTGAACAAGCTGCTGTACTTGACATCATTGCGTTGGGGTATATGGCTGTTGGAGACTTGA 560
Query 596 AACCTGTCCCCGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG 655
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AACCTGTCCCGGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG 620
Query 656 AACCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGTAATAGGGAAGT 715
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 621 AGCCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGCAATAGGGAAGT 680
Query 716 TTGAAAACGCTATACTCGTGCATCAAAGGGCTATTCGTATATTAGAGAATAGATATGGTA 775
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct 681 TTGAAAACGCTATACTCGCGCATCAAAGGGCTGTTCGTATATTAGAGAATAGATACGGTA 740
Query 776 AATGCAATACTTTACTTGTCACACCATTACTTGGTATGGCTAAGAGTTTTGCTTCTGATG 835
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 741 AAGGCAATACTTTACTTGTCACACCATTACTTGGTTTGGCAAAGAGTTTTGCTTCTGATG 800
Query 836 GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGTACGTTGACTATCTTAGAACGGAATA 895
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 801 GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGGACGGTGACTATCTTGGAACGGAATA 860
Query 896 GAGGTTCTGAGAGTGAGGATCTAGTAGTTCCGTTATTTTCACTCGGTAAACTTCTGCTCA 955
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 861 GAGGTTCTGAAAGTGAGGATCTAGTGGTGCCGTTATTTTCACTCGGTAAACTTCTGCTCA 920
Query 956 AAGAAGGTAAAGCTGCTGAAGCAGAAATTCCTTTTACCAGCATTGTAAATATATACAAGA 1015
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 921 AAGAAGGTAAAGCTGCTGAAGCAGAGATTCCTTTTACCAGGATTGTAAATATATACAAGA 980
Query 1016 AGATATACGGAGAGAGAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA 1075
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TGATATACGGAGAGAAAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA 1040
Query 1076 AGTGCTCAAAAGGTGATGCAAATGAAGCTGTTGATATCTACAGGAATGCTCTACGAATAA 1135
||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 1041 AGTGCTCAAAAGGCGATGCAAATGAAGCCGTTGATATCTACAAGAACGCTCTACGAATAA 1100
Query 1136 TCAAAGACTCAAATTATATGACAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC 1195
||||||| |||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TCAAAGATTCAA-TG----G-CAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC 1154
Query 1196 TTGCTGAGCTGCTTCATTTCGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT 1255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TTGCTGAGCTGCTTCATTTTGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT 1214
Query 1256 GCTTATTAATAAATGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA 1315
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GCCTATTAATAAACGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA 1274
Query 1316 TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTGCTAC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1275 TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTACTAA 1334
Query 1376 GAACTTGTTTGAACATCATGGAGGTATCAGTTGGCTCAGAAGG-TCAGTCCATAACCTTC 1434
|||||||||||||||||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct 1335 GAACTTGTTTGAACATCATGGAGGAATCAGTTGGTTCAGA-GGATCAGTCCATAACCTTT 1393
Query 1435 CCAATGCTAAATCTTGCAGTCACTCTTTCCCAACTGAATCGTGATGAGGAAGCCGAGCAA 1494
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1394 CCAATGCTAAATCTTGCAGTCACTCTTTCTCAGTTGAATCGTGATGAGGAAGCCGAGCAA 1453
Query 1495 ATAGCCTTAAAGGTTCTACGCATCCGTGAGAAGGCATTTGGCGAAGACTCTCTCCCTGTT 1554
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1454 GTAGCCTTAAAGGTTCTACACATCCGTGAGAAGGCATTTGGCAAAGACTCTCTCCCTGTT 1513
Query 1555 GGAGAGGCGCTGGACTGTTTGGTATCGATCCAAGCGAGACTAGGAAGAGATGATGGAGAA 1614
|| ||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1514 GGTGAGGCTCTGGACTGTTTGGTGTCGATCCAAGCGAGATTAGGAAGAGACGATGGAGAA 1573
Query 1615 ATATTGGGTTTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTCCTTCAGCT 1674
||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1574 ATACTGGGATTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTTCTTCAGCT 1633
Query 1675 CAAGAACTCATTGTTACTCTCCAGAAGATCATTCATTTCTTGGAGAAATTGGAGATGAAA 1734
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1634 CAAGAACTCATTGTTACTCTCCAAAAGATTATTCATTTCTTGGAAAAATTGGAGATGAAA 1693
Query 1735 GATGATAAATTTAAGTTTAGGAGAAGATTAGCTTTACTTAGAGAGAGATACAAGCAGAGT 1794
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1694 GATGAGAAATTTAAGTTTAGGAGAAGATTAGCTTTGCTTAGAGAGAGATACAAGCAGAAT 1753
Query 1795 CTTAGCTACTAGAATCT--T-A-CT-A-T------AGTGTTTCTTGCGTTTTGTCTTTTA 1842
||||||| ||||||| | | | || | | ||||||||||| ||||||||| |||
Sbjct 1754 CTTAGCTTCTAGAATATAGTTATCTTACTCTCTTTAGTGTTTCTTGAGTTTTGTCTATTA 1813
Query 1843 AATATTATTGTGGT--GCCAGATTCAATTTCTAATTGATGTTGTTAAT 1888
|| ||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 1814 AACATTATTGTGTTTTGCCAGATTCAGTTTCTAATTGATGTTGTTAAT 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5