BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53080.1

Length=1914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495375 jgi|Araly1|495375|fgenesh2_kg.8__1191__AT5G53080.1        2649    0.0  


> Ahg495375 jgi|Araly1|495375|fgenesh2_kg.8__1191__AT5G53080.1
Length=1861

 Score = 2649 bits (1434),  Expect = 0.0
 Identities = 1716/1848 (93%), Gaps = 36/1848 (2%)
 Strand=Plus/Plus

Query  64    GTCGGCGAAATTGCGGCCACGAGAACGAAGAGC--TTCACACTACCTCCAATGGTGTTCT  121
             ||||||| ||  |||||||||||||||||||||  |||||||||||||| ||||||||||
Sbjct  27    GTCGGCGGAACCGCGGCCACGAGAACGAAGAGCTTTTCACACTACCTCCGATGGTGTTCT  86

Query  122   CTAACTCTCTCCTCTCTTCGACCACTTCGCTTACCACATGGGCAAATCAATCAAGTTCTC  181
             ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||
Sbjct  87    CTATCTCTCTCCTCTCTTCGACCACTTCGCTCACCACATGGGCGAATCAATTAAGCTCTC  146

Query  182   AGTCAAGTCTTTCCCCGAGATATTCGACATGGC-A-GT-GTGTTTGTTTACGTAATCAGA  238
             ||||  ||  | | |||||| |||||||||||| |  | |||||||||| ||||||||||
Sbjct  147   AGTCTGGTAGTGCACCGAGAGATTCGACATGGCAATATGGTGTTTGTTTCCGTAATCAGA  206

Query  239   AACGCAAACCTAAGCTCTACTTGATTCCCGCTCGCCATTTTTTATCGACTCCAATTGATT  298
             ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct  207   AACGCAAACCTAAGCTCTACTTGATTCCCGCCCGCCATTTTTTATCGACTCCTATTGAGT  266

Query  299   CAGTCTCCTCCTCCTCAATAACG-GCTTCACGTT-ATGCTACTTCTGGCGTTTCTGAAGT  356
             |||  | | ||||||| | || | |||||| ||| |||||||||||||||||||||||||
Sbjct  267   CAG--T-CACCTCCTC-AGAAAGTGCTTCA-GTTCATGCTACTTCTGGCGTTTCTGAAGT  321

Query  357   TCAAAGGTCTACTTCGAGCAACAATGTTACTGAGATGGAAGAGTTTGAGATGGAGTTGCA  416
             ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  322   TCAAAGGTCTACTTCAAGCAACAATGTTAATGAGATGGAAGAGTTTGAGATGGAGTTGCA  381

Query  417   AGAGTTGTTTAATGAAGTCAAAAG-TATGGTGAAGATTGGGAAGGAAAGTGACGCAATGG  475
             ||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||||||
Sbjct  382   AGAGTTGTTTAATGAAGTC-AAGGCTATGGTGAAGATTGGCAAGGAAAGAGACGCAATGG  440

Query  476   ACCTTCTTCGAGCGAATTATGTTGCTGTGAAAGAAGAGCTGGATTCGGGTTTGAAAGGTA  535
             |||| ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||
Sbjct  441   ACCTACTTCGAGCGAATTATGTTGCTGTGAAAGAAGAAATGGATTCCGGTTTGAAAGGTA  500

Query  536   TCGAACAAGCTGCTGTTCTTGACATCATTGCTTTGGGGTATATGGCTGTTGGAGACTTGA  595
             | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  501   TTGAACAAGCTGCTGTACTTGACATCATTGCGTTGGGGTATATGGCTGTTGGAGACTTGA  560

Query  596   AACCTGTCCCCGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG  655
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  561   AACCTGTCCCGGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG  620

Query  656   AACCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGTAATAGGGAAGT  715
             | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  621   AGCCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGCAATAGGGAAGT  680

Query  716   TTGAAAACGCTATACTCGTGCATCAAAGGGCTATTCGTATATTAGAGAATAGATATGGTA  775
             |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct  681   TTGAAAACGCTATACTCGCGCATCAAAGGGCTGTTCGTATATTAGAGAATAGATACGGTA  740

Query  776   AATGCAATACTTTACTTGTCACACCATTACTTGGTATGGCTAAGAGTTTTGCTTCTGATG  835
             || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct  741   AAGGCAATACTTTACTTGTCACACCATTACTTGGTTTGGCAAAGAGTTTTGCTTCTGATG  800

Query  836   GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGTACGTTGACTATCTTAGAACGGAATA  895
             |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct  801   GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGGACGGTGACTATCTTGGAACGGAATA  860

Query  896   GAGGTTCTGAGAGTGAGGATCTAGTAGTTCCGTTATTTTCACTCGGTAAACTTCTGCTCA  955
             |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  861   GAGGTTCTGAAAGTGAGGATCTAGTGGTGCCGTTATTTTCACTCGGTAAACTTCTGCTCA  920

Query  956   AAGAAGGTAAAGCTGCTGAAGCAGAAATTCCTTTTACCAGCATTGTAAATATATACAAGA  1015
             ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct  921   AAGAAGGTAAAGCTGCTGAAGCAGAGATTCCTTTTACCAGGATTGTAAATATATACAAGA  980

Query  1016  AGATATACGGAGAGAGAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA  1075
              |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  981   TGATATACGGAGAGAAAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA  1040

Query  1076  AGTGCTCAAAAGGTGATGCAAATGAAGCTGTTGATATCTACAGGAATGCTCTACGAATAA  1135
             ||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct  1041  AGTGCTCAAAAGGCGATGCAAATGAAGCCGTTGATATCTACAAGAACGCTCTACGAATAA  1100

Query  1136  TCAAAGACTCAAATTATATGACAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC  1195
             ||||||| |||| |     | |||||||||||||||||||||||||||||||||||||||
Sbjct  1101  TCAAAGATTCAA-TG----G-CAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC  1154

Query  1196  TTGCTGAGCTGCTTCATTTCGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT  1255
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1155  TTGCTGAGCTGCTTCATTTTGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT  1214

Query  1256  GCTTATTAATAAATGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA  1315
             || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1215  GCCTATTAATAAACGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA  1274

Query  1316  TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTGCTAC  1375
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  1275  TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTACTAA  1334

Query  1376  GAACTTGTTTGAACATCATGGAGGTATCAGTTGGCTCAGAAGG-TCAGTCCATAACCTTC  1434
             |||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||| 
Sbjct  1335  GAACTTGTTTGAACATCATGGAGGAATCAGTTGGTTCAGA-GGATCAGTCCATAACCTTT  1393

Query  1435  CCAATGCTAAATCTTGCAGTCACTCTTTCCCAACTGAATCGTGATGAGGAAGCCGAGCAA  1494
             ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||
Sbjct  1394  CCAATGCTAAATCTTGCAGTCACTCTTTCTCAGTTGAATCGTGATGAGGAAGCCGAGCAA  1453

Query  1495  ATAGCCTTAAAGGTTCTACGCATCCGTGAGAAGGCATTTGGCGAAGACTCTCTCCCTGTT  1554
              |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct  1454  GTAGCCTTAAAGGTTCTACACATCCGTGAGAAGGCATTTGGCAAAGACTCTCTCCCTGTT  1513

Query  1555  GGAGAGGCGCTGGACTGTTTGGTATCGATCCAAGCGAGACTAGGAAGAGATGATGGAGAA  1614
             || ||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct  1514  GGTGAGGCTCTGGACTGTTTGGTGTCGATCCAAGCGAGATTAGGAAGAGACGATGGAGAA  1573

Query  1615  ATATTGGGTTTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTCCTTCAGCT  1674
             ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1574  ATACTGGGATTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTTCTTCAGCT  1633

Query  1675  CAAGAACTCATTGTTACTCTCCAGAAGATCATTCATTTCTTGGAGAAATTGGAGATGAAA  1734
             ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct  1634  CAAGAACTCATTGTTACTCTCCAAAAGATTATTCATTTCTTGGAAAAATTGGAGATGAAA  1693

Query  1735  GATGATAAATTTAAGTTTAGGAGAAGATTAGCTTTACTTAGAGAGAGATACAAGCAGAGT  1794
             ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  1694  GATGAGAAATTTAAGTTTAGGAGAAGATTAGCTTTGCTTAGAGAGAGATACAAGCAGAAT  1753

Query  1795  CTTAGCTACTAGAATCT--T-A-CT-A-T------AGTGTTTCTTGCGTTTTGTCTTTTA  1842
             ||||||| ||||||| |  | | || | |      ||||||||||| ||||||||| |||
Sbjct  1754  CTTAGCTTCTAGAATATAGTTATCTTACTCTCTTTAGTGTTTCTTGAGTTTTGTCTATTA  1813

Query  1843  AATATTATTGTGGT--GCCAGATTCAATTTCTAATTGATGTTGTTAAT  1888
             || ||||||||| |  |||||||||| |||||||||||||||||||||
Sbjct  1814  AACATTATTGTGTTTTGCCAGATTCAGTTTCTAATTGATGTTGTTAAT  1861



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 71914382560


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5