BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53080.1 Length=1914 Score E Sequences producing significant alignments: (Bits) Value Ahg495375 jgi|Araly1|495375|fgenesh2_kg.8__1191__AT5G53080.1 2649 0.0 > Ahg495375 jgi|Araly1|495375|fgenesh2_kg.8__1191__AT5G53080.1 Length=1861 Score = 2649 bits (1434), Expect = 0.0 Identities = 1716/1848 (93%), Gaps = 36/1848 (2%) Strand=Plus/Plus Query 64 GTCGGCGAAATTGCGGCCACGAGAACGAAGAGC--TTCACACTACCTCCAATGGTGTTCT 121 ||||||| || ||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 27 GTCGGCGGAACCGCGGCCACGAGAACGAAGAGCTTTTCACACTACCTCCGATGGTGTTCT 86 Query 122 CTAACTCTCTCCTCTCTTCGACCACTTCGCTTACCACATGGGCAAATCAATCAAGTTCTC 181 ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||| Sbjct 87 CTATCTCTCTCCTCTCTTCGACCACTTCGCTCACCACATGGGCGAATCAATTAAGCTCTC 146 Query 182 AGTCAAGTCTTTCCCCGAGATATTCGACATGGC-A-GT-GTGTTTGTTTACGTAATCAGA 238 |||| || | | |||||| |||||||||||| | | |||||||||| |||||||||| Sbjct 147 AGTCTGGTAGTGCACCGAGAGATTCGACATGGCAATATGGTGTTTGTTTCCGTAATCAGA 206 Query 239 AACGCAAACCTAAGCTCTACTTGATTCCCGCTCGCCATTTTTTATCGACTCCAATTGATT 298 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 207 AACGCAAACCTAAGCTCTACTTGATTCCCGCCCGCCATTTTTTATCGACTCCTATTGAGT 266 Query 299 CAGTCTCCTCCTCCTCAATAACG-GCTTCACGTT-ATGCTACTTCTGGCGTTTCTGAAGT 356 ||| | | ||||||| | || | |||||| ||| ||||||||||||||||||||||||| Sbjct 267 CAG--T-CACCTCCTC-AGAAAGTGCTTCA-GTTCATGCTACTTCTGGCGTTTCTGAAGT 321 Query 357 TCAAAGGTCTACTTCGAGCAACAATGTTACTGAGATGGAAGAGTTTGAGATGGAGTTGCA 416 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 322 TCAAAGGTCTACTTCAAGCAACAATGTTAATGAGATGGAAGAGTTTGAGATGGAGTTGCA 381 Query 417 AGAGTTGTTTAATGAAGTCAAAAG-TATGGTGAAGATTGGGAAGGAAAGTGACGCAATGG 475 ||||||||||||||||||| || | ||||||||||||||| |||||||| |||||||||| Sbjct 382 AGAGTTGTTTAATGAAGTC-AAGGCTATGGTGAAGATTGGCAAGGAAAGAGACGCAATGG 440 Query 476 ACCTTCTTCGAGCGAATTATGTTGCTGTGAAAGAAGAGCTGGATTCGGGTTTGAAAGGTA 535 |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 441 ACCTACTTCGAGCGAATTATGTTGCTGTGAAAGAAGAAATGGATTCCGGTTTGAAAGGTA 500 Query 536 TCGAACAAGCTGCTGTTCTTGACATCATTGCTTTGGGGTATATGGCTGTTGGAGACTTGA 595 | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 501 TTGAACAAGCTGCTGTACTTGACATCATTGCGTTGGGGTATATGGCTGTTGGAGACTTGA 560 Query 596 AACCTGTCCCCGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG 655 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 AACCTGTCCCGGCATTGCTTGATATGATAAACAAGATTGTTGATAATTTAAAAGACTCCG 620 Query 656 AACCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGTAATAGGGAAGT 715 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 621 AGCCTCTTTTGGATTCAGTACTTATGCATGTTGGCAGTATGTATTCGGCAATAGGGAAGT 680 Query 716 TTGAAAACGCTATACTCGTGCATCAAAGGGCTATTCGTATATTAGAGAATAGATATGGTA 775 |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| Sbjct 681 TTGAAAACGCTATACTCGCGCATCAAAGGGCTGTTCGTATATTAGAGAATAGATACGGTA 740 Query 776 AATGCAATACTTTACTTGTCACACCATTACTTGGTATGGCTAAGAGTTTTGCTTCTGATG 835 || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 741 AAGGCAATACTTTACTTGTCACACCATTACTTGGTTTGGCAAAGAGTTTTGCTTCTGATG 800 Query 836 GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGTACGTTGACTATCTTAGAACGGAATA 895 |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| Sbjct 801 GAAAAGCCACTAAAGCGATTGGTGTTTATGAGCGGACGGTGACTATCTTGGAACGGAATA 860 Query 896 GAGGTTCTGAGAGTGAGGATCTAGTAGTTCCGTTATTTTCACTCGGTAAACTTCTGCTCA 955 |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 861 GAGGTTCTGAAAGTGAGGATCTAGTGGTGCCGTTATTTTCACTCGGTAAACTTCTGCTCA 920 Query 956 AAGAAGGTAAAGCTGCTGAAGCAGAAATTCCTTTTACCAGCATTGTAAATATATACAAGA 1015 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 921 AAGAAGGTAAAGCTGCTGAAGCAGAGATTCCTTTTACCAGGATTGTAAATATATACAAGA 980 Query 1016 AGATATACGGAGAGAGAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA 1075 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 TGATATACGGAGAGAAAGATGGAAGAGTTGGCATGGCCATGTGTTCCCTTGCTAATGCTA 1040 Query 1076 AGTGCTCAAAAGGTGATGCAAATGAAGCTGTTGATATCTACAGGAATGCTCTACGAATAA 1135 ||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||| Sbjct 1041 AGTGCTCAAAAGGCGATGCAAATGAAGCCGTTGATATCTACAAGAACGCTCTACGAATAA 1100 Query 1136 TCAAAGACTCAAATTATATGACAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC 1195 ||||||| |||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 1101 TCAAAGATTCAA-TG----G-CAATAGACAACAGTATCTTGGAAAACATGAGGATAGATC 1154 Query 1196 TTGCTGAGCTGCTTCATTTCGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT 1255 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1155 TTGCTGAGCTGCTTCATTTTGTTGGAAGGGGAGATGAAGGACGAGAGTTACTAGAAGAAT 1214 Query 1256 GCTTATTAATAAATGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA 1315 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1215 GCCTATTAATAAACGAGAGATTCAAAGGGAAAAACCATCCTAGCATGGCTACACATCTTA 1274 Query 1316 TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTGCTAC 1375 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1275 TAAACCTTGCAGCATCTTATTCGCGTTCCAAGAATTATGTGGAGGCAGAACGATTACTAA 1334 Query 1376 GAACTTGTTTGAACATCATGGAGGTATCAGTTGGCTCAGAAGG-TCAGTCCATAACCTTC 1434 |||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||| Sbjct 1335 GAACTTGTTTGAACATCATGGAGGAATCAGTTGGTTCAGA-GGATCAGTCCATAACCTTT 1393 Query 1435 CCAATGCTAAATCTTGCAGTCACTCTTTCCCAACTGAATCGTGATGAGGAAGCCGAGCAA 1494 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1394 CCAATGCTAAATCTTGCAGTCACTCTTTCTCAGTTGAATCGTGATGAGGAAGCCGAGCAA 1453 Query 1495 ATAGCCTTAAAGGTTCTACGCATCCGTGAGAAGGCATTTGGCGAAGACTCTCTCCCTGTT 1554 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 1454 GTAGCCTTAAAGGTTCTACACATCCGTGAGAAGGCATTTGGCAAAGACTCTCTCCCTGTT 1513 Query 1555 GGAGAGGCGCTGGACTGTTTGGTATCGATCCAAGCGAGACTAGGAAGAGATGATGGAGAA 1614 || ||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||| Sbjct 1514 GGTGAGGCTCTGGACTGTTTGGTGTCGATCCAAGCGAGATTAGGAAGAGACGATGGAGAA 1573 Query 1615 ATATTGGGTTTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTCCTTCAGCT 1674 ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1574 ATACTGGGATTGCTGAAAAGGGTTATGATGATCCAAGAGAAAGAGTTTGGTTCTTCAGCT 1633 Query 1675 CAAGAACTCATTGTTACTCTCCAGAAGATCATTCATTTCTTGGAGAAATTGGAGATGAAA 1734 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct 1634 CAAGAACTCATTGTTACTCTCCAAAAGATTATTCATTTCTTGGAAAAATTGGAGATGAAA 1693 Query 1735 GATGATAAATTTAAGTTTAGGAGAAGATTAGCTTTACTTAGAGAGAGATACAAGCAGAGT 1794 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 1694 GATGAGAAATTTAAGTTTAGGAGAAGATTAGCTTTGCTTAGAGAGAGATACAAGCAGAAT 1753 Query 1795 CTTAGCTACTAGAATCT--T-A-CT-A-T------AGTGTTTCTTGCGTTTTGTCTTTTA 1842 ||||||| ||||||| | | | || | | ||||||||||| ||||||||| ||| Sbjct 1754 CTTAGCTTCTAGAATATAGTTATCTTACTCTCTTTAGTGTTTCTTGAGTTTTGTCTATTA 1813 Query 1843 AATATTATTGTGGT--GCCAGATTCAATTTCTAATTGATGTTGTTAAT 1888 || ||||||||| | |||||||||| ||||||||||||||||||||| Sbjct 1814 AACATTATTGTGTTTTGCCAGATTCAGTTTCTAATTGATGTTGTTAAT 1861 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71914382560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5