BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53090.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495376 jgi|Araly1|495376|fgenesh2_kg.8__1192__AT5G53090.1 1855 0.0
Ahg492007 jgi|Araly1|492007|fgenesh2_kg.7__1440__AT4G27760.1 843 0.0
Ahg949890 jgi|Araly1|949890|scaffold_801777.1 821 0.0
> Ahg495376 jgi|Araly1|495376|fgenesh2_kg.8__1192__AT5G53090.1
Length=1265
Score = 1855 bits (1004), Expect = 0.0
Identities = 1173/1254 (94%), Gaps = 13/1254 (1%)
Strand=Plus/Plus
Query 12 TCTCTCATCAATCATCTCaagaaggaagaagaagatgagcagtgaaacgtcgtcgttgac 71
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 TCTCTCATCAATCATCTCAAGAAGGAAGAAGAAGATGAGCAGTGAAACATTGTCGTTGAC 60
Query 72 gaagaagatgaagaagaagaaggaagGTTTGGGATGGATAGAGTCAATTAAAGGATGGAG 131
||||||||||||||||| ||||||||||||||||| || | ||||||| |
Sbjct 61 ---------GAAGAAGAAGAAGGAAGCTTTGGGATGGATAGAGTTGATCAGAGGATGGGG 111
Query 132 TTGTGTGTTCCACGAGTTTCTCTTCCAGAGATTCATGGCTTCTCATCTACAGAATCCACT 191
|||||| |||||||||||||||||||| ||||||||||| |||||| |||| ||||||||
Sbjct 112 TTGTGTTTTCCACGAGTTTCTCTTCCAAAGATTCATGGCGTCTCATTTACAAAATCCACT 171
Query 192 TCCTCTACCTTCACTGAATCACCTCACCTGCATTGTCACTGGCTCCACTAGTGGCATTGG 251
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 172 TCCTCTTCCTTCTCTGAATCACCTCACCTGCATTGTCACTGGCTCCACTAGCGGCATTGG 231
Query 252 TCGCGAAACCGCTAGGCAGCTTGCAGAAGCTGGTGCTCGTGTTGTTATGGCGGTGAGGAA 311
||||||||| |||||||||||||||| ||||||||||| |||||| ||||| ||||||||
Sbjct 232 TCGCGAAACAGCTAGGCAGCTTGCAGTAGCTGGTGCTCATGTTGTAATGGCTGTGAGGAA 291
Query 312 TACTAAAGCAGCTCATGAGCTGATTCAGCAATGGCAGAAGGAGTGGTCTGGTAAAGGCAT 371
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 292 TACAAAAGCAGCTCATGAGCTGATTCAACAATGGCAGAAGGACTGGTCTGGTAAAGGCAT 351
Query 372 CCCTCTTAATCTCGAGGCTATGGAACTTGATCTTCTCTCTCTGGATTCTGTCGTCGGATT 431
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 352 TCCTCTTAATCTTGAGGCTATGGAACTTGATCTTCTCTCTCTGGGTTCCGTCGTCGAATT 411
Query 432 TTGCAATCTGTGGAACGCGCGATTATCCCCTTTGCATGTTCTGATTAACAATGCCGGCAT 491
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 412 TTGCAATGTGTGGAACGCGCGATTATCCCCTTTGCATGTTCTGATCAACAATGCCGGCAT 471
Query 492 ATTTTCCATGGGAGAGGAACAGAAGTTCTCAAAGGATGGATATGAGCAACACATGCAAGT 551
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 472 ATTTTCCATGGGAGAGGAACAGAAGTTCTCAAAGGATGAATATGAGCAGCACATGCAAGT 531
Query 552 GAACCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCCTCACTTATCCGAGGCTC 611
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 532 GAACCATTTAGCTCCAGCGCTGCTTTCACTACTCCTTTTGCCCTCGCTTATCCGAGGCAC 591
Query 612 CCCAAGCAGGATCATTAATGTGAATTCTGTTATGCACTATGTTGGTTTCGTTGACCCGGA 671
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 592 CCCAAGCCGGATCATTAATGTGAACTCTGTTATGCACTATGTTGGTTTCGTTGACCCGGA 651
Query 672 TGACATGAATGTTGTTTCTGGGAAACGAAAGTTTACAAGCCTCGTTGGATATTCTGGCAG 731
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGATATGAATGTTGTTTCTGGGAAACGAAAGTTTACAAGCCTCGTTGGATATTCTGGCAG 711
Query 732 CAAGCTTGCACAGGTTATGTTTAGCAATGTACTTTTGAAAAGGCTGCCTCTAGAAACTCG 791
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 712 CAAGCTTGCACAGGTTATGTTTAGCAATGTTCTCTTGAAAAGGCTGCCACTAGAAACTCG 771
Query 792 CATTAGCGTTGTTTGTTTATCCCCCGGGATTGTCCTAACAAATGTTGCGAGAGATCTGCC 851
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 772 CATTAGTGTTGTTTGTTTATCCCCCGGGATTGTCCTAACAAATGTTGCGAGGGATCTACC 831
Query 852 GAGATATGTTCAAGTTCAATACGCGTTGATACCTTATTTCATCTTTTCGCCTCAAGAAGG 911
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AAGATATGTTCAAGTTCAATACGCGTTGATACCTTATTTCATCTTTTCGCCTCAAGAAGG 891
Query 912 CTCTAGAAGCACACTTTTCTCAGCTACAGACGCTCAGATTCCAGAGCATTGTGAAAAGCT 971
| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 892 TTGTAGAAGCACACTTTTCTCAGCGACAGACTCTCAGATTCCAAAGCATTGTGAAAAGCT 951
Query 972 AAAAACCGAAGATAAGCCCGTTTGTACATTCATATCTCAAAATTGCAAGCACACAAAGCC 1031
|||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 952 AAAAACCGGCGATAAGCCCATTTGTACATTCATATCTCAAGATTGCAAGCACACAAAGCC 1011
Query 1032 TTCAGAAGAAGCACACAACGTAGAAACAGCAGAA-AGAGTATGGGAAAAGACGATAAAGC 1090
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||
Sbjct 1012 TTCAGAAGAAGCACACAACGTAGAAACAGC-GAACAGAGTTTGGGAAAAGACGATAGAGA 1070
Query 1091 TGATCGGTCTTCCTCTTGATGCTGTAGAGAGGCTTATAGAAGGAGAAGAGGTCCAATGCC 1150
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 1071 TGATCGGTCTTCCTCTTGATGCACTGGAGAGGCTTATAGAAGGAGAAGAGGTCCAATGTC 1130
Query 1151 GGTATGGGACTCATCAACAATAAAGTCTTTCTCACAAGTCTCTATCTTCTTTCCTCCAAT 1210
|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1131 GGTATGGGACTCATCAACAATAAAGTCTTT-T-ACAAGTCTCTCTCTTCTTTCCTCCAAT 1188
Query 1211 TTGTACTTGTTAGATGTTTCTAGAACTTGACCTCAAAGCTGCATTACACTACAC 1264
||||||||| |||| | |||||||| ||||||| ||||||||||||||||||||
Sbjct 1189 TTGTACTTGCTAGAAGATTCTAGAATTTGACCTTAAAGCTGCATTACACTACAC 1242
> Ahg492007 jgi|Araly1|492007|fgenesh2_kg.7__1440__AT4G27760.1
Length=1391
Score = 843 bits (456), Expect = 0.0
Identities = 907/1121 (81%), Gaps = 45/1121 (4%)
Strand=Plus/Plus
Query 81 gaagaagaagaaggaagGTTTGGGATGGATAGAGTCAATTAAAGGATGGAGTTGTGTGTT 140
|||||||||| | ||| | |||||||||| |||| || | ||||||||| |||| ||
Sbjct 118 GAAGAAGAAGCA-GAA--TCTGGGATGGATGGAGTGGATGAGAGGATGGAGCAGTGTTTT 174
Query 141 CCACGAGTTTCTCTTCCAGA-GATTCATGGCTTCTCATCTACAGAATCCACTTCCTCTAC 199
| ||| |||||||||||| || ||| ||||||||| | |||| || |||||||| |
Sbjct 175 CGGGGAGATTCTCTTCCAGAGGA-TCACAGCTTCTCATTTGGAGAACCCTCTTCCTCTTC 233
Query 200 CTTCAC-TGAATCACCTCACCTGCATTGTCACTGGCTCCACTAGTGGCATTGGTCGCGAA 258
|||| | | ||| ||||||| ||| |||||||||||||||| || |||||||| |||||
Sbjct 234 CTTC-CGTCAATGACCTCACTTGCGTTGTCACTGGCTCCACCAGCGGCATTGGCCGCGAG 292
Query 259 ACCGCTAGGCAGCTTGCAGAAGCTGGTGCTCGTGTTGTTATGGCGGTGAGGAATACTAAA 318
|||||||||||||||||||| || ||||||| |||||| ||||| || ||||| || |||
Sbjct 293 ACCGCTAGGCAGCTTGCAGAGGCCGGTGCTCATGTTGTGATGGCCGTAAGGAACAC-AAA 351
Query 319 -GCAGCTCATGAGCTGATTCAGCAATGGCAGAAGGAGTGGTCTGGTAAAGG-CATCCCTC 376
|| ||||| |||||||| || ||||||||||| || |||||||||||||| | |||| |
Sbjct 352 GGCGGCTCAGGAGCTGATACATCAATGGCAGAACGAATGGTCTGGTAAAGGTC-TCCCAC 410
Query 377 TTAATCTCGAGGCTATGGA-ACTTGATCTTCTCTCTCTGGATTCTGTCGTC-GGATTTTG 434
| ||| | ||||| ||||| | ||||||||||||| ||||||||||| | | || ||||
Sbjct 411 TCAATATTGAGGCAATGGAGA-TTGATCTTCTCTCACTGGATTCTGTTG-CAAGA-TTTG 467
Query 435 -C-AATCTGTGGAACGCGCGATTATCCCCTTTGCATGTTCTGATTAACAATGCCGGCATA 492
| | || | |||||| || ||| |||||||||||| ||||||||||||| || ||
Sbjct 468 CCGAGGCT-TTGAACGCTCGGTTAGGACCTTTGCATGTTTTGATTAACAATGCTGGGATG 526
Query 493 TTTTCCATGGGAGAGGAACAGAAGTTCTCAAAGGATGGATATGAGCAACACATGCAAGTG 552
||| | |||||||||| || || |||||| |||| ||||||||||| ||||||||||||
Sbjct 527 TTTGCTATGGGAGAGGCGCAAAAATTCTCAGAGGAAGGATATGAGCAGCACATGCAAGTG 586
Query 553 AACCATTTAGCTCCAGCTCTGCTTTCAC-TACTCCTTTTGCCCTCACTTATCCGAGGCTC 611
|| |||||||||||||| |||||||| | |||| |||||||| || ||||||||||||||
Sbjct 587 AATCATTTAGCTCCAGCGCTGCTTTC-CGTACTTCTTTTGCCGTCTCTTATCCGAGGCTC 645
Query 612 CCCAAGCAGGATCATTAATGTGAATTCTGTTATGCACTA-TGTTGGTTTCGTTGACCCGG 670
|| ||| | ||||||||||||||||| |||||||| || ||| ||||| ||||||||||
Sbjct 646 TCCTAGCCGAATCATTAATGTGAATTCCGTTATGCA-TAGTGTCGGTTTTGTTGACCCGG 704
Query 671 ATGACATGAATGTTGTTTCTGGGAAACGAAAGTT-TACAAGCCTCGTTGGATATTCTGGC 729
|||||||||||||||||||||| | ||| |||| | ||||||| | ||||| || ||
Sbjct 705 ATGACATGAATGTTGTTTCTGGTAGACGTAAGTACT-CAAGCCTTATAGGATACTCAAGC 763
Query 730 AGCAAGCTTGCACAGGTTATGTTTAGCA--ATGTACTTTTGAAAAGGCTGCCTCTAGAAA 787
||||||||||| ||| |||||||||| | || | ||||| |||| ||| ||||| ||||
Sbjct 764 AGCAAGCTTGCCCAGATTATGTTTAGTAGCAT-T-CTTTTCAAAAAGCTTCCTCTGGAAA 821
Query 788 CTCGCA-TTAGCGTTGTTTGTTTATCCCCCGG-GATTGTCCTAACAAATGTTGCGAGAGA 845
| | | ||||||| | ||| ||||||| || | ||||||||||||||||||| || ||
Sbjct 822 CAGG-AGTTAGCGTCATATGTCTATCCCCTGGTG-TTGTCCTAACAAATGTTGCCAGGGA 879
Query 846 TCTG-CCGAGATATGTTCAAGTTCAATACGC-GTTGATACCTTATTTCATCTTTTCGCCT 903
||| || || | | |||||| || ||||| || |||||| |||||||| ||||| ||
Sbjct 880 TCTATCC-AGGTTTCTTCAAGCTCTGTACGCTGT-GATACCATATTTCATATTTTCACCC 937
Query 904 CAAGAAGGCTCTAGAAGCACACTTTTCTCAGCTACAGACGCTCAGATTCCAGAGCATTGT 963
|||||||| | |||||| | || ||||| || |||||| |||||||||||||| ||||
Sbjct 938 CAAGAAGGTTGTAGAAGTTCTCTATTCTCGGCCACAGACCCTCAGATTCCAGAGTATTGG 997
Query 964 GAAA-AGCTAAAAACCGAAGATAAGCCCGTTTGTACATTCATATCTCAAAATTGCAAGCA 1022
|||| | ||||||| ||| ||| ||| ||||| |||| || |||||| ||||| ||
Sbjct 998 GAAACA-CTAAAAAACGACGATTGGCCTGTTTGCCCATTTATTTCTCAAGATTGCC-GCC 1055
Query 1023 CA-CAAAGCCTTCAGAAGAAGCACACAACGTAGAAACAGCAGAAAGAGTATGGGAAAAGA 1081
| |||| ||||| ||||||||||||||| |||||| ||| | ||||| ||||||||||
Sbjct 1056 CTGCAAATCCTTCTGAAGAAGCACACAACACAGAAACTGCACAGAGAGTGTGGGAAAAGA 1115
Query 1082 CGATAAAGCTGATCGGTCTTCCTCTTGATGCTGTAGAGAGGCTTATAGAAGGAGAAGAGG 1141
|| || ||||| | ||||||||||| ||||| || || | |||||||||||| ||| |
Sbjct 1116 CGTTAGAGCTGGTGGGTCTTCCTCTCGATGCAGTTGAAAAGCTTATAGAAGGGGAAAATA 1175
Query 1142 TCCAATGCCGGTATGGGACTCATCAACAATAA-AGTCTTTC 1181
|||||||||||||||| | || ||||| || ||||||||
Sbjct 1176 TCCAATGCCGGTATGG-AG-CA-CAACACGAATAGTCTTTC 1213
> Ahg949890 jgi|Araly1|949890|scaffold_801777.1
Length=1100
Score = 821 bits (444), Expect = 0.0
Identities = 855/1047 (82%), Gaps = 53/1047 (5%)
Strand=Plus/Plus
Query 149 TTCTCTTCCAGAGATTCATGGCTTCTCATC-TACAGAA-TCCACTTCCTCTACCTTCACT 206
|||| || |||||| | ||||||||||| | |||| || |||| ||| ||| ||| | |
Sbjct 52 TTCTTTTGCAGAGAATGATGGCTTCTCA-CTTACA-AACTCCATTTCATCTTCCTCCTTT 109
Query 207 GAATCACCTCACCTGCATTGTCACTGGCTCCACTAGTGGCATTGG-TCGCGAAACCGCTA 265
||| ||| | || |||||||||||||||||||| ||||||||||| || ||| || ||||
Sbjct 110 GAACCACTTAACTTGCATTGTCACTGGCTCCACCAGTGGCATTGGCTC-CGAGACTGCTA 168
Query 266 GGCAGCTTGCAGAAGCTGGTGCTCGTGTTGTTATGGCGGTGAGGAATACT-AAAGCAGCT 324
|||||||||||||||||||||||| |||||||||||| |||||||| | | |||||||||
Sbjct 169 GGCAGCTTGCAGAAGCTGGTGCTCATGTTGTTATGGCTGTGAGGAACA-TAAAAGCAGCT 227
Query 325 CATGAGCTGATTCAGCAATGGCAGAAGGAGTGG--T-C---TGGTAAAGGCA-TCCCTCT 377
|||||||||||||| |||||||||| ||||| | | |||| ||| | |||| ||
Sbjct 228 CATGAGCTGATTCAACAATGGCAGACCAAGTGGTATGCTAGTGGT-GAGGGATTCCCACT 286
Query 378 TAAT-CTCGAGGCTATGGAACTTGATCTTCTCTCTCTGGATTCTGTCGTCGGATTTTGCA 436
|||| || |||| ||||||||||| ||||||||| | ||||| |||||| ||||| |||
Sbjct 287 TAATATTC-AGGCGATGGAACTTGACCTTCTCTCTTTAGATTCCGTCGTCAGATTTAGCA 345
Query 437 AT-CTGTGGAACGCGCGATTATCCCCTTTGCATGTTCTGATTAACAATGCCGGCATATTT 495
|| || |||||||| || ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 346 ATGCT-TGGAACGCACGGTTAACCCCTTTGCATGTTCTGATTAACAATGCCGGCATGTTT 404
Query 496 TCCATGGGAGAGGAACAGAAGTTCTCA-AAGGATGGATATGAGCAACACATGCAAGTGAA 554
| ||||||| || ||| || |||||| || ||||||||||| |||||||||||||||||
Sbjct 405 GCTATGGGAGGGGCACAAAATTTCTCAGAA-GATGGATATGAACAACACATGCAAGTGAA 463
Query 555 CCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCCTCACTTATCCGAGGCTCCCC 614
||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||
Sbjct 464 CCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCTTCGCTTATCCGAG-CTTCCC 522
Query 615 A-AG-CAGGATCATTAATGTGAATTCTGTTATGCACTATGTTGGTTTCGTTGACCCGGAT 672
|| | | ||||||||||| |||||||||||||| ||||||||||| ||||| || ||
Sbjct 523 GGAGTC-GAATCATTAATGTTAATTCTGTTATGCATTATGTTGGTTTTGTTGATCCAAAT 581
Query 673 GACATGAATGTTGTTTCTGGGAAACGAAAGTTTACAAGCCTC-GTTGGATATTCTGGCAG 731
|| ||||||||| ||||||| |||||||||||| ||||| | | ||||||||| | ||
Sbjct 582 GATATGAATGTTATTTCTGGTAAACGAAAGTTTTCAAGCTTGAGA-GGATATTCTAGTAG 640
Query 732 CAAGCTTGCACAGGTTATGTTTAGCAATGTACTTTTGAAAAGGCTGCCTCTAGAAACTCG 791
||| || || ||||||||||||| |||||| ||||| |||| |||||| | ||||| ||
Sbjct 641 CAAACTCGCTCAGGTTATGTTTAACAATGTTCTTTTCAAAAAACTGCCTTTGGAAAC-CG 699
Query 792 -CATTAGCGTTGTTTGTTTATCCCCCGG-GATTGTCCTAACAAATGTTGCGAGAGATCTG 849
||||||||| ||||||||||| || || | | |||| ||| || ||| | ||||||||
Sbjct 700 GCATTAGCGTCGTTTGTTTATCTCCTGGTGCT-GTCCAAACTAACGTTACTAGAGATCTT 758
Query 850 CCGAGATATGTTC-AAGTTCAATACGC-GTTGATACCTTATTTCATCTTTTCGCCTCAAG 907
|| ||| || || ||| || ||| | | | || ||||||||||||||||| ||||
Sbjct 759 CCAAGAG-TGATCCAAGATCTTTACTCTGCCC-TGCCATATTTCATCTTTTCGCCACAAG 816
Query 908 AAGGCTCTAGAAGCAC-ACTTTTCTCAGCTACAGA-CGCTCAGATTCCAGAGCATTGTGA 965
|||| | ||||||| | | ||||||| || ||| | | ||||||||||| |||||| |
Sbjct 817 AAGGTTGTAGAAGCTCGA-TTTTCTCGGCGACAAATC-CTCAGATTCCACAGCATTACCA 874
Query 966 AAAGCTAAAAACCGAA-GATAAGCCCGTTTGTACATT---CATATCTCAAAATTGCAAGC 1021
|||||||| ||| ||| || || | ||||| ||||| | |||||||||||||||| |
Sbjct 875 AAAGCTAAGAAC-GAATGAGAAATCAGTTTGCACATTATTCGTATCTCAAAATTGCAAAC 933
Query 1022 ACA-CAAAGCCTTCAGAAGAAGCACACAACGTAGAAACAGCAGAA-AGAGTATGGGAAAA 1079
|| |||| ||| |||||||| |||||| || ||||||| ||| ||||| ||||||||
Sbjct 934 -CAACAAATTGTTCTGAAGAAGCTCACAACATAAAAACAGC-GAACAGAGTTTGGGAAAA 991
Query 1080 GAC-GATAAAGCTGATCGGTCTTCCT-CTTGATGCTGTAGAGAGGCTTATAGAAGGAGAA 1137
||| | || || |||| ||||||||| || ||| | || || |||||| | || ||||||
Sbjct 992 GACAG-TAGAGTTGATTGGTCTTCCTTCT-GATACAGTGGAAAGGCTTGTGGACGGAGAA 1049
Query 1138 GAGGTCCAATGCCGGTATGGGACTCAT 1164
|| |||||||| || ||||| ||||||
Sbjct 1050 GATGTCCAATGTCGTTATGGAACTCAT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5