BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53100.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949890 jgi|Araly1|949890|scaffold_801777.1 1557 0.0
Ahg495376 jgi|Araly1|495376|fgenesh2_kg.8__1192__AT5G53090.1 826 0.0
> Ahg949890 jgi|Araly1|949890|scaffold_801777.1
Length=1100
Score = 1557 bits (843), Expect = 0.0
Identities = 970/1032 (94%), Gaps = 6/1032 (1%)
Strand=Plus/Plus
Query 67 ATTCTTTTGCAGAGAATAATGGCTTCTCACTTACAAATTCCATTTCATCTTCCTCCTTTA 126
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 51 ATTCTTTTGCAGAGAATGATGGCTTCTCACTTACAAACTCCATTTCATCTTCCTCCTTTG 110
Query 127 AACCACTTAACTTGTATTGTCACTGGCTCAACTAGTGGCATTGGCTCCGAGACCGCTAGG 186
|||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 111 AACCACTTAACTTGCATTGTCACTGGCTCCACCAGTGGCATTGGCTCCGAGACTGCTAGG 170
Query 187 CAACTTGCAGAGGCTGGTGCTCATGTTGTTATGGCGGTTAGGAACATAAAAGCAGCTCAT 246
|| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 171 CAGCTTGCAGAAGCTGGTGCTCATGTTGTTATGGCTGTGAGGAACATAAAAGCAGCTCAT 230
Query 247 GAGCTGATTCAACAATGGCAGACCAAGTGGTCTGCTAGTGGTGAGGGACTCCCACTTAAT 306
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 231 GAGCTGATTCAACAATGGCAGACCAAGTGGTATGCTAGTGGTGAGGGATTCCCACTTAAT 290
Query 307 ATTCAGGCAATGGAACTTGACCTTCTCTCTTTAGATTCCGTCGTCAGATTTAGCAATGCG 366
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ATTCAGGCGATGGAACTTGACCTTCTCTCTTTAGATTCCGTCGTCAGATTTAGCAATGCT 350
Query 367 TGGAATGCACGGCTAGCCCCTTTGCATGTTCTGATTAATAATGCCGGCATGTTTGCTATG 426
||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 351 TGGAACGCACGGTTAACCCCTTTGCATGTTCTGATTAACAATGCCGGCATGTTTGCTATG 410
Query 427 GGAGGGGCACAAAAATTCTCAGAAGATGGATATGAACAGCACATGCAAGTGAACCATTTA 486
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 411 GGAGGGGCACAAAATTTCTCAGAAGATGGATATGAACAACACATGCAAGTGAACCATTTA 470
Query 487 GCTCCAGCTCTGCTTTCACTACTCCTTTTGCCTTCGCTTATCCGAGCTTCCCGGAGTCGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCTCCAGCTCTGCTTTCACTACTCCTTTTGCCTTCGCTTATCCGAGCTTCCCGGAGTCGA 530
Query 547 ATCATTAATGTTAATTCTGTTATGCATTATGTTGGTTTTGTTGATCCAAATGATATGAAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATCATTAATGTTAATTCTGTTATGCATTATGTTGGTTTTGTTGATCCAAATGATATGAAT 590
Query 607 TTTGTTTCTGGTAAACGAAAGTTTTCAAGCTTGAGCGCATATTCTAGCAGCAAACTCGCT 666
|| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 591 GTTATTTCTGGTAAACGAAAGTTTTCAAGCTTGAGAGGATATTCTAGTAGCAAACTCGCT 650
Query 667 CAGGTTATGTTTAACAATGTTCTTTTaaaaaaaCTGCCTTTGGAAACCGGCATTAGCGTC 726
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 651 CAGGTTATGTTTAACAATGTTCTTTTCAAAAAACTGCCTTTGGAAACCGGCATTAGCGTC 710
Query 727 GTTTGTTTATCTCCTGGTGTTGTCCAAACTAACATTACAAGAGATCTTCCAAGATTGGTC 786
||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| || ||
Sbjct 711 GTTTGTTTATCTCCTGGTGCTGTCCAAACTAACGTTACTAGAGATCTTCCAAGAGTGATC 770
Query 787 CAAGATCTTTACTCAGCCTTGCCTTATTTCATCTTTTCACCACAAGAAGGTTGTAGAAGC 846
|||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 771 CAAGATCTTTACTCTGCCCTGCCATATTTCATCTTTTCGCCACAAGAAGGTTGTAGAAGC 830
Query 847 TCGCTTTTCTCGGCGACAGATCCTCAGATTCCAAACCATTACCAAAAGCTAAAAACCAAT 906
||| |||||||||||||| |||||||||||||| | |||||||||||||||| ||| |||
Sbjct 831 TCGATTTTCTCGGCGACAAATCCTCAGATTCCACAGCATTACCAAAAGCTAAGAACGAAT 890
Query 907 GAGAAATCTGTTTGCACATTATTCATATCTCTAAATTGCAAACTCA-CGAATTGTTCTGA 965
|||||||| ||||||||||||||| |||||| ||||||||||| || | |||||||||||
Sbjct 891 GAGAAATCAGTTTGCACATTATTCGTATCTCAAAATTGCAAAC-CAACAAATTGTTCTGA 949
Query 966 AGAAGCTCAAAACGTTGAAACAGCTAACAGAGTTTGGGAAAAGACATTAGAGTTGATCGG 1025
||||||||| ||| | ||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 950 AGAAGCTCACAACATAAAAACAGCGAACAGAGTTTGGGAAAAGACAGTAGAGTTGATTGG 1009
Query 1026 TCTTCCTTCTGATACAGTGGAAAGGCTTGTGGAGGGAGAAG-TGGTC-AAGTGTCGTTAT 1083
||||||||||||||||||||||||||||||||| ||||||| || || || |||||||||
Sbjct 1010 TCTTCCTTCTGATACAGTGGAAAGGCTTGTGGACGGAGAAGATG-TCCAA-TGTCGTTAT 1067
Query 1084 CGAACTCGTTAA 1095
|||||| ||||
Sbjct 1068 GGAACTCATTAA 1079
> Ahg495376 jgi|Araly1|495376|fgenesh2_kg.8__1192__AT5G53090.1
Length=1265
Score = 826 bits (447), Expect = 0.0
Identities = 897/1109 (81%), Gaps = 51/1109 (5%)
Strand=Plus/Plus
Query 3 GAAGAAGAATGATGGTTTAGGG-TGGATTCAGTGGATGAGAGGAT-GGTTTAATGTTGTG 60
||||||||| || | ||| ||| ||||| ||| ||| ||||||| || || |||| |
Sbjct 64 GAAGAAGAAGGAAGCTTT-GGGATGGATAGAGTTGATCAGAGGATGGGGTT-GTGTTTTC 121
Query 61 CAAGAGATTCTTTTGCAGAGAATAATGGCTTCTCACTTACAAATTCCATTTCATCTTCCT 120
|| ||| |||| || || ||| | ||||| ||||| ||||||| |||| ||| |||||||
Sbjct 122 CACGAGTTTCTCTTCCAAAGATTCATGGCGTCTCATTTACAAAATCCACTTCCTCTTCCT 181
Query 121 CCTTTAAACCACTTAACTTGTATTGTCACTGGCTCAACTAGTGGCATTGGCTC-CGAGAC 179
|| | || ||| | || || |||||||||||||| ||||| |||||||| || ||| ||
Sbjct 182 TCTCTGAATCACCTCACCTGCATTGTCACTGGCTCCACTAGCGGCATTGG-TCGCGAAAC 240
Query 180 CGCTAGGCAACTTGCAG-AGGCTGGTGCTCATGTTGTTATGGCGGTTAGGAACATAAAAG 238
|||||||| ||||||| | ||||||||||||||||| ||||| || ||||| | |||||
Sbjct 241 AGCTAGGCAGCTTGCAGTA-GCTGGTGCTCATGTTGTAATGGCTGTGAGGAATACAAAAG 299
Query 239 CAGCTCATGAGCTGATTCAACAATGGCAGACCAAGTGGTCTGCTAGTGGT-GAGGGACTC 297
||||||||||||||||||||||||||||| || || ||| | |||| ||| | |
Sbjct 300 CAGCTCATGAGCTGATTCAACAATGGCAG---AA--GGACTGGT-CTGGTAAAGGCA-TT 352
Query 298 CCACTTAATATTCAGGCAATGGAACTTGACCTTCTCTCTTTAGATTCCGTCGTCAG-ATT 356
|| |||||| || |||| ||||||||||| ||||||||| | | |||||||||| | |||
Sbjct 353 CCTCTTAATCTTGAGGCTATGGAACTTGATCTTCTCTCTCTGGGTTCCGTCGTC-GAATT 411
Query 357 TAGCAATGCGTGGAATGCACGGCTAGCCCCTTTGCATGTTCTGATTAATAATGCCGGCAT 416
| |||||| |||||| || || || ||||||||||||||||||| || |||||||||||
Sbjct 412 TTGCAATGTGTGGAACGCGCGATTATCCCCTTTGCATGTTCTGATCAACAATGCCGGCAT 471
Query 417 GTTTGCTATGGGAGGGGCACAAAAATTCTCAGAA-GATGGATATGAACAGCACATGCAAG 475
||| | ||||||| || ||| || |||||| || |||| |||||| |||||||||||||
Sbjct 472 ATTTTCCATGGGAGAGGAACAGAAGTTCTCA-AAGGATGAATATGAGCAGCACATGCAAG 530
Query 476 TGAACCATTTAGCTCCAGCTCTGCTTTCACTACTCCTTTTGCCTTCGCTTATCCGAG-CT 534
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct 531 TGAACCATTTAGCTCCAGCGCTGCTTTCACTACTCCTTTTGCCCTCGCTTATCCGAGGCA 590
Query 535 TCCCGGAGTCGAATCATTAATGTTAATTCTGTTATGCATTATGTTGGTTTTGTTGATCCA 594
||| || || ||||||||||| || ||||||||||| ||||||||||| ||||| ||
Sbjct 591 CCCCA-AGCCGGATCATTAATGTGAACTCTGTTATGCACTATGTTGGTTTCGTTGACCCG 649
Query 595 AATGATATGAATTTTGTTTCTGGTAAACGAAAGTTTTCAAGCTT-GA-GCGCATATTCTA 652
||||||||||| |||||||||| |||||||||||| ||||| | | | | |||||||
Sbjct 650 GATGATATGAATGTTGTTTCTGGGAAACGAAAGTTTACAAGCCTCGTTG-G-ATATTCTG 707
Query 653 GCAGCAAACTCGCTCAGGTTATGTTTAACAATGTTCTTTTaaaaaaaCTGCCTTTGGAAA 712
||||||| || || ||||||||||||| ||||||||| || |||| ||||| | ||||
Sbjct 708 GCAGCAAGCTTGCACAGGTTATGTTTAGCAATGTTCTCTTGAAAAGGCTGCCACTAGAAA 767
Query 713 C-CGGCATTAGCGTCGTTTGTTTATCTCCTGGTG-TTGTCCAAACTAACATTACAAGAGA 770
| || |||||| || ||||||||||| || || | |||||| ||| || || | || ||
Sbjct 768 CTCG-CATTAGTGTTGTTTGTTTATCCCCCGG-GATTGTCCTAACAAATGTTGCGAGGGA 825
Query 771 TCTTCCAAGAT-TGGTCCAAGATCTTTACTCAGCCTTG---CCTTATTTCATCTTTTCAC 826
||| ||||||| || || ||| || ||| | | ||| ||||||||||||||||| |
Sbjct 826 TCTACCAAGATATGTTC-AAGTTCAATACGC-G--TTGATACCTTATTTCATCTTTTCGC 881
Query 827 CACAAGAAGGTTGTAGAAGCTCGCTTTTCTCGGCGACAGA-TCCTCAGATTCCAAACCAT 885
| |||||||||||||||||| | |||||||| |||||||| || |||||||||||| |||
Sbjct 882 CTCAAGAAGGTTGTAGAAGCACACTTTTCTCAGCGACAGACTC-TCAGATTCCAAAGCAT 940
Query 886 TACCAAAAGCTAAAAACCAATGAGAAATCTGTTTGCACATTATTCATATCTCTAA-ATTG 944
| |||||||||||||| || || | |||| ||||| |||||||| || ||||
Sbjct 941 TGTGAAAAGCTAAAAACCGGCGATAAGCCCATTTGTACATT---CATATCTC-AAGATTG 996
Query 945 CAAACTCACGAATTGTTCTGAAGAAGCTCAAAACGTTGAAACAGCTAACAGAGTTTGGGA 1004
||| | ||| || ||| |||||||| || ||||| |||||||| ||||||||||||||
Sbjct 997 CAAGCACACAAAGCCTTCAGAAGAAGCACACAACGTAGAAACAGCGAACAGAGTTTGGGA 1056
Query 1005 AAAGAC-ATTAGAGTTGATCGGTCTTCCTTCT-GATACAGTGGAAAGGCTTGTGGAGGGA 1062
|||||| || |||| |||||||||||||| || ||| || |||| |||||| | || |||
Sbjct 1057 AAAGACGAT-AGAGATGATCGGTCTTCCT-CTTGATGCACTGGAGAGGCTTATAGAAGGA 1114
Query 1063 GAAGTGGTC-AAGTGTCGTTATCGAACTC 1090
|||| |||| || ||||| ||| | ||||
Sbjct 1115 GAAGAGGTCCAA-TGTCGGTATGGGACTC 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5