BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53110.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495378 jgi|Araly1|495378|fgenesh2_kg.8__1194__AT5G53110.1 1099 0.0
Ahg949894 jgi|Araly1|949894|scaffold_801781.1 634 0.0
> Ahg495378 jgi|Araly1|495378|fgenesh2_kg.8__1194__AT5G53110.1
Length=738
Score = 1099 bits (595), Expect = 0.0
Identities = 676/715 (95%), Gaps = 6/715 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTAACAAAATTAATATCATTCTCTCTCTTGTTTCTATCTCTTCTAATCCCGACG 60
||||||||||||||| |||||||||||||||| || || || ||||| ||||| || ||
Sbjct 1 ATGGATTTAACAAAAATAATATCATTCTCTCTATTATTCCTCTCTCTCCTAAT-CC--CG 57
Query 61 ACGACGACGACCACTTCCACCGTTACATGCACTAACGCCGTTTGTCGCCGTGACGGCCCG 120
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 58 ACGACGACG---ACTTCCACCATTACATGCACTAACGCCGTTTGTCGCCGTGACGACCCT 114
Query 121 ATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCTCATTCTTGTGGTTACGACAAA 180
|||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
Sbjct 115 ATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCCCCTTCTTGCGGTTACGACAGA 174
Query 181 GGCTTCGACTTAACGTGCGATATTAACGCCGGTAACAGAACAACCATAACGTTACCGTTT 240
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 175 GGCTTCGACTTAACGTGCGATATTAACGCCGTTAACAGAACCACCATAACGTTACCTTTT 234
Query 241 TCCGGTAACTTCACCGTGGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGAC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCCGGTAACTTCACCGTCGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGAC 294
Query 301 CCAAACAACTGTCTTCCTCAACGGATCTTACAGCTAAACCTCAACTCGACGCCGTTTAGT 360
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 295 CCAAACAACTGTCTTCCTCAACGGATCTTAGAGCTAAACCTCAACACGACGCCGTTTACC 354
Query 361 GGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACTTCAGAGTATCTCCGTTTT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 355 GGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACGTCAGAGTATCTCCGTTTT 414
Query 421 AGGCCGTTGAATCCGATAACGTGTTTGAGTGGTAAAAACAGCACGGTGTTTGCTACTCCT 480
||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 415 AGGCCGTTGAATCCGATTACGTGTTTGAGTGATAAAAACAGCACGGTGTTTGCGACTCCT 474
Query 481 TCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTAT 534
Query 541 GTTCCGGTTCGGTGGCCGTTTTATGAGCAAATCGTGTCGTCTTCGGATTTGAGTGATAAC 600
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 535 GTTCCGGTTCGGTGGCCGTTTTATGAACAGATCGTGTCGTCTTCGGATTTGAGTGATAAC 594
Query 601 CTCTGGCTTACTTGGAGGGTTCCAAGATGTAGTAGGTGTGAGATTAAAGGTGGTAAGTGT 660
|||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 595 CTCTGGCTCACTTGGAGGGTTCCGAGATGTAGTAGGTGTGAGATTAGAGGTGGTAAATGT 654
Query 661 GGGATTAAGAGTAATTCTTCTCGTGAAATCATTTGCTCTCATGTTCATAAACCAG 715
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 655 GGGATTAAGAGTAATTCTTCTAGTGAAATCATTTGCTCTGATGTTCATAAACCAG 709
> Ahg949894 jgi|Araly1|949894|scaffold_801781.1
Length=542
Score = 634 bits (343), Expect = 0.0
Identities = 404/433 (93%), Gaps = 6/433 (1%)
Strand=Plus/Plus
Query 715 GCTATTCCGAGAAGAGCTCGTTACGCAATAGCCGTAGGCGCCGGAATCCCAGGAGCTTTA 774
|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 76 GCTATTCCTAGAAGAGCTCGTTACGCAATAGCCATAGCCGCCGGAATCCCAGGAGCTTTG 135
Query 775 ATAGTCTTTGGTCTTTTCTGCTTCGTATACAGCAAAATCAGTTCATGCATTAAACGGCGT 834
|| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||
Sbjct 136 ATCGTCTTTGGTCTTTTCTGTTTCATTTACAGCAAAATCAGTTCATGCATTAAACGACGC 195
Query 835 CGTCTCGTCCCAACCCCAGAGATCAACAACGCTCAAGCCCATTATTTACATTCAAGTGTC 894
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 196 CGTCTCGTCCCAAGTCCAGAGATCAACAACGCTCAAGCCCATTATTTACATTCTAGTGTC 255
Query 895 ATA-GTAATGGGTCTTGATGGGCCAACTATAGAGTCGTA-CCCAAAGATAGTATTGGGAG 952
| | |||||||| ||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 256 A-ACGTAATGGGCCTTGATGGGCCAACTATAGAGTCATACCCCAAA-ATAGTATTGGGAG 313
Query 953 AGAGCAAAAGGTTGCCCAAAGTTGATGACGCTACATGTGCTATTTGTCTCTCCGAGTATG 1012
|||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct 314 AGAGCAAAAGGTTGCCCAAAGTAGATGATGCTACGTGTGCTATTTGTCTATCGGAGTATG 373
Query 1013 AGCCAAAGGAGACGCTTCGGACAATTCC-ACAGTGTCAACATTGTTTTCATGCTGATTGT 1071
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 374 AGCCAAAGGAGACGCTTCGGACAATTCCAAC-GTGTCAACATTGTTTTCATGCTGATTGT 432
Query 1072 ATCGACGAGTGGCTGAAGTTGAATGGGACTTGTCCGGTGTGTCGGAACTCACCGGAGCAG 1131
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 433 ATCGACGAGTGGCTGAAATTGAATGGGACTTGTCCGGTGTGTCGGAACTCTCCGGAGCAG 492
Query 1132 ATTTTGCCGCCTG 1144
||||| |||||||
Sbjct 493 ATTTTTCCGCCTG 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5