BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53120.6
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495379 jgi|Araly1|495379|fgenesh2_kg.8__1195__AT5G53120.1 1160 0.0
> Ahg495379 jgi|Araly1|495379|fgenesh2_kg.8__1195__AT5G53120.1
Length=1415
Score = 1160 bits (628), Expect = 0.0
Identities = 695/728 (95%), Gaps = 2/728 (0%)
Strand=Plus/Plus
Query 871 AAAA-GTTCTTGTTGTTGGTGGAGGTGATGGTGGTGTTCTTCGAGAGATTTCTCGCCATA 929
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AAAATGTTCTTGTTGTTGGTGGAGGTGATGGTGGTGTTCTTCGAGAGATTTCTCGCCATA 701
Query 930 GTTCTGTTGAGGTTATTGATATCTGTGAGATAGACAAGATGGTTATAGATGTGTCTAAGA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GTTCTGTTGAGGTTATTGATATCTGTGAGATAGACAAGATGGTTATAGATGTGTCTAAGA 761
Query 990 AGTTCTTCCCCGAGTTAGCGGTTGGGTTTGACGATCCTCGTGTTCAACTTCACATTGGTG 1049
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 762 AGTTCTTCCCCGAGTTAGCGGTTGGATTTGAGGATCCTCGTGTTCAACTTCACATTGGTG 821
Query 1050 ATGCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTGTTGATT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ATGCTGCTGAGTTCCTCCGTAAATCCCCTGAAGGGAAGTATGATGCCATCATTGTTGATT 881
Query 1110 CTTCAGATCCCGTAGGTCCTGCTCTTGCGCTTGTTGAGAAGCCTTTCTTCGAGACACTGG 1169
|||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 882 CTTCAGATCCTGTTGGTCCTGCTCTAGCGCTTGTTGAGAAGCCCTTCTTCGAAACACTGG 941
Query 1170 CTAGAGCGTTGAAGCCTGGGGGAGTTCTTTGTAACATGGCAGAAAGTATGTGGCTCCATA 1229
| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 942 CAAGAGCATTGAAGCCTGGGGGAATTCTTTGTAACATGGCGGAAAGTATGTGGCTCCATA 1001
Query 1230 CTCATCTTATTGAAGATATGATCTCCATTTGCCGTCAAACATTCAAAAGTGTTCACTATG 1289
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1002 CTCATCTTATTGAAGATATGATCTCCATTTGCCATCAAACATTCAAAAGTGTTCACTATG 1061
Query 1290 CGTGGAGCAGCGTCCCCACATATCCAAGCGGCGTGATTGGTTTCGTCTTGTGCTCTACTG 1349
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1062 CGTGGAGCAGCGTCCCCACATATCCAAGCGGGGTGATTGGTTTCGTCTTGTGCTCTACCG 1121
Query 1350 AAGGACCAGCTGTTGACTTCAAGAACCCAATCAACCCTATTGAGAAACTAGACGGTGCGA 1409
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1122 AAGGACCAGCTGTTGATTTCAAGAACCCAATCAACCCAATTGAGAAACTAGAGGGTGCGA 1181
Query 1410 TGACCCATAAAAGAGAATTGAAGTTCTATAACTCTGATATGCACAGAGCCGCATTTGCTT 1469
||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 1182 TGACCCATAAAAGAGAATTGAAGTTTTATAACTCTGATATGCACAGAGCAGCGTTCGCTT 1241
Query 1470 TGCCCACATTCCTGCGGAGAGAAGTAGCTTCACTTCTGGCTTCTTGACTTCTGTTTGGCT 1529
||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1242 TGCCCACATTCTTGCAGAGAGAAGTGGCTTCACTTCTGGCTTCTTGACTTCTGTTTGGCT 1301
Query 1530 CTACCATATCCCTCATATCAAACTTT-GTAGAACTCTTGAAGAGGAATAATAAATCATTG 1588
||||| ||||| |||| || |||||| |||||||| |||| |||||||||||||||||||
Sbjct 1302 CTACCTTATCCATCATGTCGAACTTTTGTAGAACTGTTGACGAGGAATAATAAATCATTG 1361
Query 1589 AAGGCTTT 1596
|||||||
Sbjct 1362 GAGGCTTT 1369
Score = 809 bits (438), Expect = 0.0
Identities = 474/492 (96%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 304 CCGTTTACGACCAGTATACAGAGGCTGGAGCTGGGGAAGAAAAGGATTGTCTATGGAGGG 363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 157 CCGTTTACGACCAGTATACAGAGGCTGGAGCTGGAGAAGAAAAGGATTGTCTATGGAGGG 216
Query 364 AGACGTCGGAATAGGTTTGGTATGCCAGAATACTATGGATGGGAAGGCGAGTAATGGAAA 423
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 217 AGACGTCGGAAAAGGTTTGGTATGCCCGAAGACTATGGATGGGAAGGCGAGTAATGGGAA 276
Query 424 TGGTTTAGAGAAGACTGTACCTTCTTGTTGCCTTAAGGCTATGGCATGTGTACCTGAGGA 483
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 277 TGGTTTAGAGAAGACTGTACCTTCTTGTTGCCTTAAGGCTTTGGCATGTGTACCAGAGGA 336
Query 484 TGATGCTAAGTGTCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTC 543
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 337 TGATGCTAAGTGCCACTCCACTGTTGTTTCTGGGTGGTTCTCGGAACCTCACCCTCGCTC 396
Query 544 TGGGAAAAAAGGCGGCAAAGCAGTCTATTTCAACAACCCTATGTGGCCAGGAGAAGCACA 603
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TGGGAAAAGAGGCGGCAAATCAGTCTATTTCAACAACCCTATGTGGCCAGGAGAAGCACA 456
Query 604 CTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGT 663
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 457 CTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAATTCAGATTTTCAGGAGGTCCTAGT 516
Query 664 GTTCGAGTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACCGA 723
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 517 GTTCGAGTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATTGTACAGCTGACTGA 576
Query 724 AAAAGATGAATGTGCATATCAGGAGATGATAGCCCATCTGCCTTTATGCTCTATATCTTC 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GAAAGATGAATGTGCATATCAGGAGATGATAGCCCATCTGCCTTTATGCTCTATATCTTC 636
Query 784 CCCTAAAAATGT 795
|||||||||||
Sbjct 637 GCCTAAAAATGT 648
Score = 213 bits (115), Expect = 3e-54
Identities = 139/150 (93%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 111 AGAG-CCTGAGAGACAAGTGAGAAACGCAACAACACCACCGAAAGAGAGAGTCCAAATTC 169
|||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 9 AGAGACCTTTGAGAGAAGTGAGAAACGCAACAACAACACCGAAAGAGAGAGTCCAAATTC 68
Query 170 GAAAGAGAAAAAGAATCAAATTCcttcttcttcctttttt-gattttcaattattacttt 228
|||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct 69 GAAAGAGAAA--GAATCAAATTCCTTCTTCTTCCTTTTTTTGTTTTTCAATTACTACTTT 126
Query 229 aatcttctttcccgctctctattcttcttc 258
||||||||||||||||| ||||||||||||
Sbjct 127 AATCTTCTTTCCCGCTCACTATTCTTCTTC 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5