BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53130.1
Length=2653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949896 jgi|Araly1|949896|scaffold_801783.1 3430 0.0
> Ahg949896 jgi|Araly1|949896|scaffold_801783.1
Length=2192
Score = 3430 bits (1857), Expect = 0.0
Identities = 2075/2182 (95%), Gaps = 7/2182 (0%)
Strand=Plus/Plus
Query 374 AATCTTATTAGTCTC-AAACTATGAATTTCCGACAAGAGAAGTTTGTAAGGTTTCAAGAT 432
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTTATTAGTCTCAAAACTATGAATTTCCGACAAGAGAAGTTTGTAAGGTTTCAAGAT 60
Query 433 TGGAAGTCGGATAAGACTTCCTCCGACGTGGAATATTCCGGTAAAAACGAGATTCAAACT 492
|||||||| || ||||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 61 TGGAAGTCCGACAAGACTTCCTCCGACGTGGAATATTCCGGGAGAAATGAGATTCAGACT 120
Query 493 GGAATATTCCAGAGAACAATAAGCTCAATCTCCGACAAGTTTTACAGAAGCTTTGAATCA 552
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGAATATTCCGGAGAACAATAAGCTCAATCTCAGACAAGTTTTACAGAAGCTTTGAATCA 180
Query 553 AGCTCTGCAAGGATCAAACTATTCAAAAGATCTTACAAGTCTTACTCTTTTAAAGAAGCT 612
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCTCTGCAAGGATCAAAGTTTTCAAAAGATCTTACAAGTCTTACTCTTTTAAAGAAGCT 240
Query 613 GTTTCAAAAGGGATTGGTTCTACTCACAAAATTCTTGACCCACAAGGACCTTTTCTTCAG 672
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GTTTCAAAAGGGATTGGTTCAACTCACAAAATACTTGACCCACAAGGACCTTTTCTTCAA 300
Query 673 AGATGGAACAAGATCTTTGTTTTAGCTTGTATCATCGCTGTCTCGCTTGACCCTTTGTTC 732
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AGATGGAACAAGATCTTTGTTTTAGCTTGTATCATCGCTGTTTCGCTTGACCCTTTGTTC 360
Query 733 TTCTACGTGCCTATCATCGATGATGCTAAGAAATGTCTTGGTATTGACAAGAAAATGGAA 792
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 361 TTCTACGTGCCTATCATTGATGATACCAAGAAATGTCTTGGTATTGACAAGAAAATGGAG 420
Query 793 ATAACAGCAAGCGTTTTGCGCTCTTTCACTGATGTTTTTTATGTCCTTCACATCATTTTC 852
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 421 ATAACTGCAAGCGTTTTGCGCTCTTTCACTGATGTTTTTTACATTATTCACATCATTTTC 480
Query 853 CAGTTCCGTACTGGCTTTATCGCTCCTTCGTCTCGTGTTTTTGGGAGAGGTGTTCTTGTT 912
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CAGTTTCGTACTGGCTTTATCGCTCCTTCGTCTCGAGTTTTTGGGAGAGGTGTTCTTGTC 540
Query 913 GAGGACAAGCGAGAGATCGCTAAACGTTACTTGTCCTCACATTTCATAATTGACATTCTT 972
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGGACAAGCGAGAGATTGCAAAACGTTACTTGTCCTCACATTTCATAATTGACATTCTT 600
Query 973 GCTGTTCTTCCGCTTCCGCAGATGGTGATTTTGATAATCATTCCACATATGAGAGGTTCA 1032
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 601 GCTGTTCTTCCGCTTCCACAGATGGTGATTTTGATTGTCATTCCACATATGAGAGGGTCA 660
Query 1033 TCGTCTTTGAACACGAAGAATATGTTGAAGTTTATTGTTTTCTTCCAATATATACCGAGG 1092
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TTGTCTTTGAACACGAAGAATATGTTGAAGTTCATTGTTTTCTTCCAATATATACCGAGG 720
Query 1093 TTTATAAGAATATATCCGCTCTACAAGGAAGTTACAAGAACTTCAGGCATACTCACTGAG 1152
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 TTTATAAGAATCTATCCGCTCTACAAGGAAGTGACAAGAACTTCAGGCATACTCACTGAG 780
Query 1153 ACAGCTTGGGCTGGAGCTGCTTTCAATCTCTTCCTCTACATGCTTGCTAGTCATGTGTTT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACAGCTTGGGCTGGAGCTGCTTTCAATCTCTTCCTCTACATGCTTGCTAGTCATGTGTTT 840
Query 1213 GGTGCTTTCTGGTATTTGTTCTCAATCGAACGCGAAACGGTGTGCTGGAAACAAGCTTGT 1272
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 841 GGTGCTTTCTGGTATTTGTTCTCAATCGAACGCGAAACAGTATGTTGGAAACAAGCTTGC 900
Query 1273 GAGAGGA-ATAACCCTC-CGTGCATTTCGAAG-TTGTTGTACTGTGACCCTGAAACTGCA 1329
|||| || | ||| | | |||||| ||| | |||||||||||||||| | ||| | ||
Sbjct 901 GAGAAGACA-AACTCAAGC-TGCATTCCGA-GCTTGTTGTACTGTGACCGTCAAATTCCA 957
Query 1330 GGAGGCAATGCTTTCCTCAATGAGTCTTGTCCGATTCAGACACCAAACACAACACTCTTC 1389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 GGAGGCAATGCTTTCCTCAATGAGTCTTGTCCGATTCAGACACCAAACACAACACTTTTC 1017
Query 1390 GACTTTGGGATATTCCTTGACGCACTTCAATCCGGTGTAGTGGAATCTCAAGATTTCCCT 1449
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 GACTTTGGGATATTCCTTAACGCACTTCAGTCCGGTGTAGTGGAATCTCAAGATTTCCCT 1077
Query 1450 CAAAAGtttttttACTGTTTCTGGTGGGGTCTGCAGAACCTCAGTTCGCTCGGTCAGAAC 1509
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 CAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGCAAAACCTCAGTTCGCTCGGTCAGAAC 1137
Query 1510 CTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGGG 1569
||| |||||||||||||| ||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 1138 CTTGAAACAAGTACATATGTTTGGGAGATCTGTTTTGCGGTCTTCATTTCTATTGCCGGG 1197
Query 1570 CTGGTTTTGTTCTCCTTCTTGATTGGAAATATGCAGACGTATCTGCAATCCACTACCACG 1629
|||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||
Sbjct 1198 CTGGTTTTGTTCTCGTTCTTGATTGGGAACATGCAGACGTATCTGCAATCGACGACCACA 1257
Query 1630 AGATTGGAGGAGATGAGGGTAAAGAGAAGAGACGCAGAACAATGGATGTCACACCGTTTG 1689
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1258 AGGTTGGAGGAGATGAGAGTAAAGAGAAGAGACGCAGAACAATGGATGTCTCACCGTTTG 1317
Query 1690 CTACCTGAGAACTTGAGAAAAAGAATCCGGCGATACGAGCAGTACAAATGGCAAGAGACA 1749
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1318 CTCCCTGAGAACTTGAGAAAAAGAATCCGGCGGTACGAGCAGTACAAATGGCAAGAGACA 1377
Query 1750 AGAGGTGTTGACGAAGAGAATCTTCTTAGTAATCTTCCCAAAGATCTTAGACGCGACATC 1809
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 AGAGGCGTTGACGAAGAGAATCTTCTGAGTAATCTTCCCAAAGATCTTAGACGCGACATC 1437
Query 1810 AAACGTCATCTCTGTCTCGCCCTTCTCATGCGGGTCCCCATGTTTGAGAAAATGGACGAA 1869
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1438 AAACGTCATCTCTGTCTCGCCCTTCTCATGCGGGTCCCGATGTTTGAGAAGATGGACGAA 1497
Query 1870 CAGCTTCTTGATGCGCTCTGTGACCGTTTGCAACCTGTGTTATACACAGAGGAAAGCTAC 1929
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CAGCTTCTTGATGCTCTCTGTGACCGTTTGCAACCTGTGTTATACACAGAGGAAAGCTAC 1557
Query 1930 ATAGTAAGAGAAGGAGATCCGGTAGACGAAATGCTCTTCATAATGCGCGGGAAGCTTCTA 1989
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1558 ATAGTAAGAGAAGGAGATCCGGTAGACGAAATGCTCTTTATTATGCGTGGGAAGCTTCTA 1617
Query 1990 ACAATCACAACAAACGGTGGAAGAACCGGTTTTTTAAATTCCGAGTATCTTGGAGCCGGT 2049
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 ACAATCACAACAAATGGTGGAAGAACCGGTTTTTTCAATTCCGAGTATCTTGGAGCCGGT 1677
Query 2050 GATTTCTGTGGTGAGGAGCTTTTAACCTGGGCTTTAGACCCACACTCATCCTCAAACCTC 2109
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1678 GATTTCTGCGGTGAGGAGCTTTTAACCTGGGCTTTAGACCCACACACATCCTCAAACCTC 1737
Query 2110 CCAATCTCAACAAGAACTGTTCGAGCTCTCATGGAAGTTGAAGCTTTCGCACTTAAAGCT 2169
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1738 CCAATCTCAACAAGAACTGTTCGAGCTCTCATGGAAGTCGAAGCTTTCGCACTTAAAGCT 1797
Query 2170 GATGACCTCAAATTCGTGGCTTCCCAGTTCAGACGTCTTCACAGCAAACAGCTAAGACAT 2229
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GATGACCTCAAATTTGTGGCATCCCAGTTCAGACGTCTTCACAGCAAACAGCTAAGACAT 1857
Query 2230 ACTTTCAGGTACTACTCACAACAATGGAAGACTTGGGCCGCTTGCTTCATACAAGCCGCT 2289
|||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1858 ACTTTCAGGTTCTACTCGCAACAATGGAGGACTTGGGCCGCTTGCTTCATACAAGCCGCT 1917
Query 2290 TGGAGAAGATACATTAAGAAGAAACTCGAAGAGTCTCTTAAAGAAGAAGAGAATCGGTTG 2349
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1918 TGGAGAAGATACATTAAGAAGAAACTTGAAGAATCTCTTAAAGAAGAAGAGAACCGGTTG 1977
Query 2350 CAGGATGCTTTGGCTAAAGAAGCTTGTGGAAGTTCCCCAAGCCTCGGTGCTACAATATAC 2409
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1978 CAGGACGCTTTGGCTAAGGAAGCTTGTGGAAGTTCCCCAAGCCTCGGGGCTACAATATAC 2037
Query 2410 GCATCACGGTTTGCTGCAAATATCTTGCGCACAATACGTAGGAGCGGATCAGTAAGGAAA 2469
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2038 GCATCACGGTTTGCTGCAAATATCTTGCGCACAATACATAGGAGCGGATCAGTAAGGAAA 2097
Query 2470 CCAAGGATGCCGGAACGAATGCCACCTATGCTACTTCAGAAACCAGCAGAGCCAGATTTC 2529
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2098 CCGAGGATGCCAGAACGAATGCCACCTATGCTACTTCAGAAACCAGCAGAACCAGATTTC 2157
Query 2530 AACAGTGATGATTAATTAATTA 2551
||||||||||||||||||||||
Sbjct 2158 AACAGTGATGATTAATTAATTA 2179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100063073615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5