BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53140.1
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949897 jgi|Araly1|949897|scaffold_801784.1 2060 0.0
> Ahg949897 jgi|Araly1|949897|scaffold_801784.1
Length=1303
Score = 2060 bits (1115), Expect = 0.0
Identities = 1241/1303 (95%), Gaps = 4/1303 (0%)
Strand=Plus/Plus
Query 353 TAAGGTTTGACTACTTAGATGGTATGCAGCAGTTTCATAAGGAGTTTCATTGTTCAAGCT 412
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAAGATTTGGCTACTTAGATGGTATGCAGCAGTTTCATAAGGAGTTTCATTGTTCAAGCT 62
Query 413 GGTTGTCGTATTGGGGTGTTGGCTCAAGGAAGACATCAGTTTATTCATATTAAGAAGACT 472
||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 63 GGTGGTCATATTGGGGTGTTGGCTCAAGGACGACATCAGTTTAACCATATTAAGAAGACT 122
Query 473 TTGAGTGTGGGTTTTGGATTTAGAACTAGTGTGATTGGATTTAGAACAACCAGTGGAATT 532
|| | ||| |||||| |||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 123 TTCACTGTTGGTTTTCGATTTAGAACTAGTGTGATTGGATTTAGAAGAACCTGTGGACTT 182
Query 533 GGATTTAGAACTAGTGCGAAGATGATGGTTGATACTTCTGCTGGAGAGAAACGTATATCC 592
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 183 GGATTTAGAACTAGTGCGAAGATGATGGTTGATACTTCTACCGGAGAGAAACGTATATCC 242
Query 593 TTAGTTGATATGCCGCCTGAGAAAGTTGATGATGGTGGATACATCGGTGGTGGGTGGAAA 652
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 243 TTTGTTGATATGCCTCCTGAGAAAGTTGATGATGGTGGATACATCGGTGGTGGTTGGAAA 302
Query 653 AATGATGATGGAAGCTTGAGCTGTGGGTACTGTAGTTTCAGAGGGAAAAGATCTACGATG 712
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 AATGACGATGGAAGCTTGAGCTGTGGGTACTGTAGTTTCAGAGGGAAAAGATCTACTATG 362
Query 713 GAAGATTTCTATGATATCAAAGCTTCCACTATTGAAGGCCAAGCAGTTTGCATGTTTGGA 772
||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 363 GAAGATTTCTATGATGTCAAAGCTTCCACAATTGAAGGCCAAACAGTTTGCATGTTTGGA 422
Query 773 ATATTTGATGGCCATGGTGGTTCACGTGCTGCTGAATACCTGAAGGAACACCTGTTTAAC 832
||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 423 ATATTTGATGGTCATGGTGGTTCACGTGCTGCTGAGTACTTGAAGGAACACCTCTTTAAC 482
Query 833 AATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAATGAAACATAT 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AATCTTATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAATGAAACATAT 542
Query 893 AAACAAACTGATGTAGCATTCCTCGAGTCCGAAAAGGATACTTACAGAGATGATGGCTCC 952
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 543 AAACAAACTGATGTAGCATTCCTCGAGTCAGAAAAGGATACTTACAGAGATGATGGCTCC 602
Query 953 ACAGCATCTGCTGCTGTGTTGGTGGGGAACCATTTGTATGTTGCAAATGTTGGAGACTCG 1012
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACAGCATCGGCTGCTGTGTTGGTGGGGAACCATTTGTATGTTGCAAATGTTGGAGACTCG 662
Query 1013 AGGACAATAGTTTCTAAAGCTGGGAAAGCGATCGCGCTATCTGATGACCATAAGCCAAAT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AGGACAATAGTTTCTAAAGCTGGGAAAGCGATCGCGCTATCTGATGACCATAAGCCAAAT 722
Query 1073 AGAAGCGATGAAAGAAAGCGAATTGAAAGTGCTGGTGGTGTTATCATGTGGGCAGGAACA 1132
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 723 AGAAGCGATGAAAGAAAGCGAATTGAAAGCGCTGGTGGTGTTATCATGTGGGCAGGAACA 782
Query 1133 TGGAGAGTAGGTGGGGTGTTGGCTATGTCCCGGGCCTTTGGTAACAGAATGCTGAAGCAA 1192
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 783 TGGAGAGTAGGTGGGGTGTTGGCAATGTCCCGGGCGTTTGGTAACAGAATGCTGAAGCAA 842
Query 1193 TTCGTTGTTGCTGAACCCGAGATACAAGATCTAGAGATAGATCATGAGGCCGAGTTGCTT 1252
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 843 TTCGTTGTTGCTGAACCCGAGATACAAGATCTAGAGATAGATCATGAGGCTGAGTTGCTT 902
Query 1253 GTGCTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAGGATGCGGTAGCCCTTGCT 1312
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 903 GTACTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAGGATGCGGTAACTCTTGCT 962
Query 1313 CAGAGCGAGGAAGAGCCCGAAGCAGCTGCCCGCAAGTTAACTGACACTGCCTTCAGCC-G 1371
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||| |
Sbjct 963 CAGAGCGAGGAGGAGCCTGAGGCAGCTGCCCGCAAGTTAACTGACACTGCCTTT-GCCCG 1021
Query 1372 TGGCAGTGCAGACAACATCACGTGCATTGTTGTTAAATTCCGTCATGATAAGACAGAATC 1431
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1022 TGGCAGTGCAGACAACATCACGTGCATTGTTGTTAAATTCCGCCATGATAAGACCGAATC 1081
Query 1432 TCCTAAAATCGAAAC-AAACGCCATGGCTGAATCGGAACCTGAACTGAACCCCACAACTG 1490
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1082 TCCTAAAATC-AAACCAAACGCCATGGCTGAGGCGGAACCTGAACTGAACCCCACAGCTG 1140
Query 1491 AACTGGAACCTGAATCAAACCCCAGTACTGCATTGGAAACTGAATCAATCCCCAAAGCTG 1550
|| ||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 1141 AAGTGGAACCCGAATCAAACCCCAGTACTGAAATGGAAACTGAATCAAGCCCCAAAGCTG 1200
Query 1551 AACTGGAATCCGAACCTGATGCTATACCTGATCCAAAACCTGAAACCGAACCAGAGACCA 1610
||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1201 AACTGGAATCCAAACCTGATGCTATACCCGATCCAACACCGGAAACCGAACCAGAGACCA 1260
Query 1611 AGGGTGAGAAAGCTGGTGAGTAAGGTAGCAGCCGGGGAAAGGT 1653
||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1261 AGGGTGAGAAAGCAGGTGAGTAAGGTAGCAGCCAGGGAAAGGT 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5