BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53150.1
Length=2614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495386 jgi|Araly1|495386|fgenesh2_kg.8__1202__AT5G53150.1 3286 0.0
> Ahg495386 jgi|Araly1|495386|fgenesh2_kg.8__1202__AT5G53150.1
Length=2408
Score = 3286 bits (1779), Expect = 0.0
Identities = 2095/2243 (93%), Gaps = 40/2243 (2%)
Strand=Plus/Plus
Query 1 TTCCACTGAATCTAATATTTTTTATTTGCTTCTTTGATTTTGCATTGAGACAGGTTTGGA 60
|||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1 TTCCACTGAATCTAATCTTTTTTTTTTGCTTCTTTGATTTTCCATTGAGACAGGTTGGGA 60
Query 61 ACGTTCCGAGGAGTCTGTTGAAGATCCTCGATTCTAAAAAGCTTCCAGAGGACAATAATT 120
|||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 61 ACGTTCTG-GGAGTCTGTTGAAGATCCTCTATTCTAAAAAGTTTCCAGAGGACAATAGTT 119
Query 121 TGTGACGGAGTAACTCTCGAGGACATGGAATGCAACAAGGATGAAGCGAAAAGGGCAATG 180
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGACAGAGTAACTCTCGAGGACATGGAATGCAACAAGGATGAAGCGAAAAGGGCAATG 179
Query 181 GATATTGCTGAGAGGAAGATGACAGAGAAGGATTACACTGGGGCGAAAAAGTTTGCTAAC 240
|||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 180 GATATTGCTGAGAGGAAGATGACAGAGAAGGACTACAATGGGGCGAAAAAGTTCGCTAAC 239
Query 241 AAGGCTCAAAACTTGTTTCCCGAGTTGGATGGTCTGAAA-CAATTGTTTG-TGGCAATCA 298
||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||
Sbjct 240 AAGGCTCAAAACTTGTTTCCCGAGTTGGATGGTCT-AAATCAATTG-TTGACGGCAATCA 297
Query 299 ATGTTTATATCTCGGGAGAGAAAACATTC-GCCGGAGAAGCTGATTGGTATGGTGTCCTT 357
|||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 298 ATGTTTTTATCTCGGGAGAGAAAAAATTCTG-CGGAGAAGCTGATTGGTATGGTGTCCTT 356
Query 358 GGTGTAGACCCCTTTGCTAGTGATGAAGCACTGAAAAAACAATACCGGAAATTGGTTCTT 417
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGTGTAGACCCATTTGTTAGTGATGAAGCACTGAAAAAACAATACCGGAAATTGGTTCTC 416
Query 418 ATGCTCCATCCGGATAAAAACAAGTGTAAAGGCGCTGAAGGTGCGTTTAATCTGGTTGCA 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 ATGCTCCATCCGGATAAAAACAAGTGTAAAGGCGCTGAAGGTGCGTTTAAGCTGGTTGCA 476
Query 478 GAAGCTTGGGCTCTACTATCTGATAAGGATAAGAGAATCTTATATAACGTAAAGAGGGGC 537
||||||||| |||||||||||| ||||| ||||||||||| |||||| |||||||||||
Sbjct 477 GAAGCTTGGAATCTACTATCTGACAAGGAAAAGAGAATCTTGTATAACTTAAAGAGGGGC 536
Query 538 AAAGATGTCAAAGCAGCTCAACAAAGATTCCCAACAACACAGAGAGAGATTCCATCACAC 597
||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||
Sbjct 537 AAAGATGTCAAAGAAGCTCAACAAAGATTCCCACCAACACAGAGCGGGATTCCACCACAC 596
Query 598 CAGCCAACTTCCAACGGGATTCCAAATGTAAGAGAGCATGTAGTTTCGAGTGCTAGGGCT 657
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 CAGCCAACTTCTAACGGGATTCCAAATGTAAGAGAGCATGTAGTTTTGAGTGCTAGGGCT 656
Query 658 AGATATAAGCCTGCTACCCGTAAGCCTGCTGCCCGTATGGATAGATCTCGCACGGGTTCG 717
|||| |||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 657 AGATCTAAGCCCGCTGCCCGTAAGCCTGCTGCCCGTACGGATAGATCTCGCATGGGTTCG 716
Query 718 CCTGCTTTTGTTTATCCGA--CA-CAGGAGAGTAGTACCTTTTGGACCATGTGCAACAAA 774
||||||||||||| ||||| || |||||| ||||||||||||||||| ||||||||||
Sbjct 717 CCTGCTTTTGTTTCTCCGATGCATGAGGAGAATAGTACCTTTTGGACCAAGTGCAACAAA 776
Query 775 TGCGACACACAATATGAGTACCAGAGGGTTTATCTCAACCAAACATTGCTTTGTCCACAC 834
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 777 TGCAACACACAATATGAGTACCAGAGGGTTTATCTTAACCAAACCTTGCTTTGTCCACAC 836
Query 835 TGCCATCATGGTTTCGTTGCAGAAGAGAAAACTCCGCCTACAAATATTCCGAAGCCCCCA 894
|||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 837 TGCCGTCAAGGTTTCGTTGCAGAAGAGAAAACTCCGCCTAAAAATATTCCGAAGCCGCCA 896
Query 895 GTCAACATCTCATCTAACCAACATCACCGGAGTTCCAAAAACCAAGCGTCGAACAAGAAC 954
|||||||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||||
Sbjct 897 GTCAACATCTCATCTAGCCAACAGCACCGGAGTTCCAAAAATCAAGCGTCAAACATGAAC 956
Query 955 TCAAATGGTTCTTCTTATAGGAGAGAGCCTGCAACATCTGTTAACCAT-AATTTTCAGTG 1013
|||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||
Sbjct 957 TCAAATGGTTCTTCTTCTAGGAGAGAGCCTGCACCATCTGTTAACC-TGAATTTTCAGTG 1015
Query 1014 GGA---TTCATCAAGAATGGGTGGTTCTTACAGCCGAAATGCCACAAATGAAACGGCGAA 1070
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1016 GGATTCTTCATCAAGAATGGGTGGTTCTAACAGCCGAAATGCCACAAATGAAGCGGCGAA 1075
Query 1071 TGTAGTTCAGCAAGGACAAGATAAACTGAAAAGAGTGTTTTGGGAGACGCAAGAAAGGGA 1130
|||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1076 TGTAGTTCAGCAAGCACAAGATAAACTGAAAAGAGGGTTTGGGGAGATGCAAGAAAGGGA 1135
Query 1131 GGCGGCTAGAGGATTTACAAACTCTGATCTGGGGAATTTTAAGAGGCAGAAGACTGATGA 1190
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TGTGGCTAGAGGATTTACAAACTCTGATCTGGGGAATTTTAAGAGGCAGAAGACTGATGA 1195
Query 1191 TTCCCATATGCGTGGTCCATCTGCAGGCTCTCGTCATCCGTATGTACAAGCATTGTTACG 1250
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 TTCCCATATGCGTGGTCCATCTGCAGGCTCTCGTCATCCTTATGTACAAGCATTGTTACG 1255
Query 1251 TTCTGATATAAAGAAAGCTCTTATGGACAGAGGCCAGTCAGAGATTTTTAAGAGACTTCC 1310
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTCTGATATAAAAAAAGCTCTTATGGACAGAGGCCAGTCAGAGATTTTTAAGAGACTTCC 1315
Query 1311 TATGATGATCGCTAAAATGGAAGGGAAGGTGAACCCAACTGAAGGGGAGAAGAACAGTAC 1370
| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1316 GAAGATGATCGCTGAAACGGAAGGGAAGGTGAACGCAACTGAAGGGGAGAAGAACAGTAT 1375
Query 1371 GAAGGCAA---------TGAGTAGCAAGGC-AAGTGAGGTTGAAAGGAGCAAGATGAGTA 1420
|||||||| ||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1376 GAAGGCAACGAGCAAGATGAGTAGCAAGGCGAA-TGAGGTTGAAAGGAGCAAGATAAGTA 1434
Query 1421 GCACGGCGAATGAGGTTGAAAGGTCAGTTGAGGTA-ATTCCCC-ATG-AGTCAGATGAAG 1477
|||| ||||||||||||||||||||||||||||| || ||| | | |||| ||
Sbjct 1435 GCACCGCGAATGAGGTTGAAAGGTCAGTTGAGGTTGATGAAGAGATGGA-T--GATGTAG 1491
Query 1478 TGAAGGAAATCGTTGTTCCAGATTCAGACTTTCACAACTTTGATCTTGACCGATCTGAAA 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TGAAGGAAATCGTTGTTCCAGATTCAGACTTTCACAACTTTGATCTTGACCGATCTGAAA 1551
Query 1538 GTGCTTTTAAAGACGATCAAATTTGGGCTGCTTATGACGATG-CTGATGGAATGCCTCGG 1596
|| |||||||||| || || |||||||||||||||||||||| | |||||||||||||||
Sbjct 1552 GTTCTTTTAAAGATGACCAGATTTGGGCTGCTTATGACGATGAC-GATGGAATGCCTCGG 1610
Query 1597 TTTTACGCCCGCATCCAAAAGGTGATTTCTGTGAATCCTTTTAAGTTGAAAATCAGTTGG 1656
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||
Sbjct 1611 TTTTACGCCCGCATCCAAAAGGTGATCTCTGTGAATCCCTTTAAGATGAAAATCAGCTGG 1670
Query 1657 CTCAATTCCAAAACCACCAGTGAATTTGGTCCCATAGACTGGATGGGTGCTGGTTTTGCT 1716
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1671 CTCAATTCCAAAAGCACCAGTGAATTTGGTCCTATAGACTGGATGGGTGCTGGTTTTGCT 1730
Query 1717 AAATCATGTGGGGATTTTAGGTGTGGGAGATATGAATCTACAGATACACTAAATGCCTTT 1776
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 AAAACATGTGGGGATTTTAGGTGTGGGAGATATGAATCTACAGATACACTAAATGCCTTT 1790
Query 1777 TCTCACAGTGTCGATTTTACCAAAGGTGCAAGAGGACTCCTCCATATTCTTCCCAAAAAG 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCTCACAGTGTCGATTTTACCAAAGGTGCAAGAGGACTCCTCCATATTCTTCCCAAAAAG 1850
Query 1837 GGACAAGTTTGGGCATTGTATCGAAATTGGTCCCCTGAATGGGACAAGAATACCCCTGAT 1896
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1851 GGACAAGTTTGGGCATTGTATCAAAATTGGTCCCCTGAGTGGGACAAGAATACCCCTGAC 1910
Query 1897 GAAGTTAAACACAAGTATGAGATGGTGGAAGTTCTTGATGACTATACAGAAGACGATCAG 1956
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1911 GAAGTTAAACACAAGTACGAGATGGTGGAAGTTCTTGATGACTATACAGAAGACAATCAG 1970
Query 1957 AGTCTAACGGTGGCTCTCTTACTCAAAGCTGAAGGGTTCAGGGTAGTTTTCCGCAGATGC 2016
||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 1971 AGTTTAACCGTGGCTCTCTTACTCAAAGCTGAAGGATTCAGGGCAGTTTTCCGCAGAAGC 2030
Query 2017 ACAGAGAA-ACTTGGTGTGAGGAAGATTGCCAAGGAAGAAATG-TTAAGATTCTCCCATC 2074
||||| || ||||||||||||||||||||| |||||||||||| ||| |||||||||| |
Sbjct 2031 ACAGA-AAGACTTGGTGTGAGGAAGATTGCAAAGGAAGAAATGCTTA-GATTCTCCCACC 2088
Query 2075 AGGTGCCTCATTACATTCTTACAGGGAAAGAAGCTGATAACGCACCGGAAGGTTTTCTGG 2134
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 2089 AGGTGCCTCATTACATTCTTACAGGGAAAGAAGCTGATAACGCACCAGAAGGTTATCTGG 2148
Query 2135 AACTAGACCCTGCTGCAACTCCTTGTGCATTCTCTTCAGAGAACGCAGAGGCGGATGAGA 2194
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2149 AACTAGACCCGGCTGCAACTCCTTGTGCATTCTCTTCAGAGAACGCAGAGGCGAATGAGA 2208
Query 2195 AAAGTGAAGCTGT-GAAAGAGAA 2216
||||||||||||| ||| |||||
Sbjct 2209 AAAGTGAAGCTGTAGAA-GAGAA 2230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98577554060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5