BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53160.2
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949899 jgi|Araly1|949899|scaffold_801786.1 905 0.0
> Ahg949899 jgi|Araly1|949899|scaffold_801786.1
Length=622
Score = 905 bits (490), Expect = 0.0
Identities = 572/609 (94%), Gaps = 15/609 (2%)
Strand=Plus/Plus
Query 302 GAAGAAGATGGAAGCTAACGGGATTGAGAACTT---G-A-C-GAATCCGAATCAGGAAAG 355
|||||||||||||| |||||||||||||||||| | | | ||||||||||| ||||||
Sbjct 14 GAAGAAGATGGAAGTTAACGGGATTGAGAACTTGACGAATCAGAATCCGAATCTGGAAAG 73
Query 356 AGAGTTTATAAGGAGACATCATAAGCATGAGCTTGTGGATAATCAGTGTAGCTCTACGCT 415
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 74 AGAGTTTATTAGGAGACATCATAAACATGAGCTTGTTGAGAATCAGTGTAGCTCTACGCT 133
Query 416 TGTTAAACATATCAACGCTCCTGTTCATATTGTGTGGTCACTTGTGAGAAGATTTGATCA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TGTTAAACATATCAACGCTCCTGTTCATATTGTGTGGTCACTTGTGAGAAGATTTGATCA 193
Query 476 GCCACAGAAGTATAAGCCGTTTATCAGTAGATGTGTGGTGAAAGGAAACATGGAGATTGG 535
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 GCCACAGAAGTATAAACCATTTATCAGTAGGTGTGTGGTGAAAGGAAACATGGAGATTGG 253
Query 536 TACAGTAAGAGAAGTTGATGTGAAATCTGGACTACCAGCAACTAGAAGCACTGAGAGATT 595
||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||
Sbjct 254 TACAGTAAGAGAAGTTGATGTCAAATCAGGTTTACCAGCTACTAGAAGCACTGAGAGATT 313
Query 596 GGAGTTACTTGATGACAATGAGCATATTCTCAGTATCAGAATCGTTGGTGGTGATCATAG 655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGAGTTACTTGATGATAATGAGCATATTCTCAGTATCAGAATCGTTGGTGGTGATCATAG 373
Query 656 ACTTAAGAACTATTCTTCAATCATCTCTCTTCACCCCGAGACTATAGAAGGAAGAATAGG 715
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 374 ACTCAAGAACTATTCTTCAATCATTTCTCTTCACCCTGAGACTATAGAAGGAAGAATAGG 433
Query 716 AACACTTGTGATTGAGTCATTTGTGGTTGATGTACCAGAAGGAAACACAAAGGATGAGAC 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GACACTTGTGATTGAGTCATTTGTGGTTGATGTACCAGAAGGAAACACAAAGGATGAGAC 493
Query 776 TTGTTACTTTGTTGAAGCTTTAATCAAATGCAATCTTAAATCTTTAGCTGATATCTCTGA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TTGTTACTTTGTTGAAGCTTTAATCAAATGCAATCTTAAATCTTTAGCTGATATCTCTGA 553
Query 836 ACGTCTTGCGGTTCAAGACACGACA---GAATCGA------GAGTCTAAAGATCAAAGGA 886
||||||||||||||||||||||||| ||||| | |||| |||||||| |||||
Sbjct 554 ACGTCTTGCGGTTCAAGACACGACAACAGAATCCATCAACAGAGTTTAAAGATCTAAGGA 613
Query 887 GTAAGAAAC 895
|||||||||
Sbjct 614 GTAAGAAAC 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5