BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53180.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495390 jgi|Araly1|495390|fgenesh2_kg.8__1206__AT5G53180.1 2348 0.0
> Ahg495390 jgi|Araly1|495390|fgenesh2_kg.8__1206__AT5G53180.1
Length=1551
Score = 2348 bits (1271), Expect = 0.0
Identities = 1463/1552 (94%), Gaps = 27/1552 (2%)
Strand=Plus/Plus
Query 35 CCAAATCTTCTTCTCTTCTTTATCTTCCCCA--AC--GCGAAACCCTAATTTCTCTGCAG 90
|||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1 CCAAATCTTCGTCTCTTCTTTATCTTCCCCAGCGCGAGCGAAACCCTAACTTCTCTGCAG 60
Query 91 ATTTTTCCCAAATCTCAGCTCTAAGATTCGTTGTGAGCAATGTCTTCTGTTTCAAGCCAG 150
||||| | | ||||||||||| |||||||||| |||| |||||| |||||||||||||||
Sbjct 61 ATTTTGCAC-AATCTCAGCTCCAAGATTCGTT-TGAGAAATGTCATCTGTTTCAAGCCAG 118
Query 151 CCACAGTTTCGTTACACGCAACCTCCTTCAAAGGTTCTTCATTTGAGAAACTTGCCATGG 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCACAGTTTCGTTACACGCAACCTCCTTCAAAGGTTCTTCATTTGAGAAACTTGCCATGG 178
Query 211 GAATGCACTGAAGAGGAGTTAATTGAACTCGGAAAGCCTTTTGGTACTGTTGTTAATACA 270
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 GAATGCACTGAAGAAGAGTTAATTGAACTCGGCAAGCCTTTTGGTACTGTTGTTAATACA 238
Query 271 AAATGCAATGTTGGAGCTAATCGAAATCAAGCTTTCATTGAGTTTGAAGATTTGAATCAA 330
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 239 AAGTGCAATGTTGGAGCTAATCGAAATCAAGCTTTCATTGAGTTTGAAGATTTAAACCAA 298
Query 331 GCTATACAAATGATATCTTACTATGCTTCTTCTTCGGAGCCTGCTCAAGTTCGTGGTAAA 390
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 299 GCTATACAAATGATTTCTTACTATGCTTCTTCGTCGGAGCCGGCTCAAGTTCGAGGTAAA 358
Query 391 ACTGTCTACCTCCAGTACTCCAACAGGCAAGAGATAGTGAACAACAAAACGACAGCGGAT 450
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 359 ACTGTCTACCTCCAGTACTCTAACAGGCAAGAGATAGTGAATAACAAGACGACAGCGGAT 418
Query 451 GTTGTGGGGAATGTTCTTCTGGTGACTATCGAAGGCGATGATGCTCGTATGGTCAGCATT 510
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 419 GTTGTGGGGAATGTTCTTCTGGTGACTGTCGAAGGCGAGGATGCTCGTATGGTCAGCATT 478
Query 511 GATGTCTTGCATCTGGTATTCTCAGCATTTGGGTTTGTCCACAAGATTACTACTTTCGAG 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATGTCTTGCATCTGGTATTCTCAGCATTTGGGTTTGTCCACAAGATTACTACTTTCGAG 538
Query 571 AAGACAGCCGGATACCAAGCACTGGTTCAATTTACTGATGCAG-AAACTGCAACCGCTGC 629
||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct 539 AAGACAGCCGGATACCAGGCACTGGTTCAATTTTCTGATG-AGGAAACTGCAACCGCTGC 597
Query 630 AAAACTTGCCCTCGATGGAAGAAGCATCCCTAGGTATCTACTCGCTGAG-ACCGTGGGAC 688
|||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 598 AAAAAATGCCCTTGATGGAAGAAGCATCCCTAGGTATCTACTCGCTGAGCAA-GTGGGAC 656
Query 689 AATGCTCACTTAAAATCACATATTCAGCTCATACAGATCTGACTGTCAAATTTCAGAGTC 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AATGCTCACTTAAAATCACATATTCAGCTCATACAGATCTGACTGTCAAATTTCAGAGTC 716
Query 749 ATCGGAGCAGGGACTATACTAATCCTTACCTTCCCGTTGCTCCATCAGCCATTGATAGTA 808
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 717 ATCGGAGCAGGGACTATACTAATCCTTACCTTCCAATTGCTCCATCAGCCATTGACAGTA 776
Query 809 CTGGTCAGGTGGCTGTGGGTGTAGACGGGAAGAAGATGGAACCTGAAAGTAATGTTCTTC 868
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 CTGGTCAGGTGGCTGTGGGTGTAGACGGGAAGAAGATGGAGCCTGAAAGTAATGTTCTTC 836
Query 869 TCGCATCTATTGAAAACATGCAGTATGCAGTAACCTTGGATGTTTTACACATGGTTTTTG 928
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 TCGCATCCATTGAAAACATGCAGTATGCAGTAACCTTGGATGTTCTACACATGGTTTTTG 896
Query 929 CGGCTTTTGGGGAAGTTCAAAAGATTGCAATGTTTGACAAGAATGGTGGGGTACAGGCAC 988
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 897 CGGCTTTTGGGGATGTTCAAAAAATTGCAATGTTTGACAAGAATGGTGGGCTACAGGCAC 956
Query 989 TGATCCAATACTCAGATGTTCAAACGGCTGTGGTGGCGAAGGAAGCATTGGAAGGACATT 1048
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 TGATCCAATACAAAGATGTTCAAACGGCTGTTGTGGCGAAGGAAGCATTGGAAGGACATT 1016
Query 1049 GTATCTACGATGGTGGTTTTTGTAAGCTCCACATTACTTATTCACGCCACACCGACCTCA 1108
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1017 GTATCTATGATGGTGGTTTTTGTAAGCTCCACATTACTTATTCACGCCACACTGACCTCA 1076
Query 1109 GCATAAAGGTGAACAACGATAGAAGCAGAGACTACACAATGCCCAACCCACCGGTTCCAA 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GCATAAAGGTGAACAACGATAGAAGCAGAGACTACACAATGCCCAACCCACCGGTTCCAA 1136
Query 1169 TGCCTCAACAACCCGTTCAGAATCCATACGCCGGCAATccacagcaataccacgcagcag 1228
| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1137 TACCTCAACAACCCGGTCAGAATCCATACACCGGCAATCCACAGCAATACCACGCAGCAG 1196
Query 1229 gtgggagccaccaccagcagcagcagcagccacAAGGTGGATGGGTCCAACCAGGAGGGC 1288
||||||||||||| |||||||| || | | | |||||||||||||||||||||||||
Sbjct 1197 GTGGGAGCCACCA---GCAGCAGC--CA-C-A-A-GGTGGATGGGTCCAACCAGGAGGGC 1247
Query 1289 AAGGCTCTATGGGAATGGGTGGTGGTGGTCACAATCATTACATGGCACCACCATCTTCAA 1348
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1248 AAGGCTCAATGGGAATGGGTGGTGGTGGTCACAATCCTTACATGGCACCACCATCTTCAA 1307
Query 1349 GCTCAATGCATCAAGGTCCGGGTGGTCATATGCCTCCACAGCATTATGGTGGTCCTGGTC 1408
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GCTCAATGCATTATGGTCCGGGTGGTCATATGCCTCCACAGCATTATGGTGGTCCTGGTC 1367
Query 1409 CAATGCATTAGAGAGAGAAA-A--GAAAGTCCCTCAAAAGTCGAAGACAAAGAAAGATGT 1465
|||||||||||||||||||| | |||||||||| |||||||||||||||| || |||||
Sbjct 1368 CAATGCATTAGAGAGAGAAAGAAAGAAAGTCCCT-AAAAGTCGAAGACAAA-AA-GATGT 1424
Query 1466 TTAATCTCTCTCTTTATTTCTCTTAGCTCTGTTTTTTAAAGTTTGGAACACTTGTACTTG 1525
||||||||||||||||| |||| |||||||||||||| ||||||||||| |||| ||
Sbjct 1425 TTAATCTCTCTCTTTATCTCTCGTAGCTCTGTTTTTTTTT-TTTGGAACACTAGTACGTG 1483
Query 1526 TGTCCAAAAGATGtttttttAAGGATAAAACCATTTGAGAAATGTATTAGAA 1577
|||||||| |||| ||||| || || |||||||| ||||||||||||||||
Sbjct 1484 TGTCCAAATGATGATTTTT-AACTATTAAACCATTCGAGAAATGTATTAGAA 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5