BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53190.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495392 jgi|Araly1|495392|fgenesh2_kg.8__1208__AT5G53190.1 1310 0.0
> Ahg495392 jgi|Araly1|495392|fgenesh2_kg.8__1208__AT5G53190.1
Length=990
Score = 1310 bits (709), Expect = 0.0
Identities = 888/969 (92%), Gaps = 34/969 (4%)
Strand=Plus/Plus
Query 46 ATGGGTGATAAACTTCGATTATCCATCGGAATTTTGGGAAACGGAG-CTTCTCTGTTGCT 104
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 45 ATGGGTGATAAACTTCGATTATCCATCGGAATTTTGGGAAACGGAGCCTCCT-TGTTGCT 103
Query 105 ATATACAGCTCCAATAGTAACATTTTCAAGGGTGTTTAAGAAGAAAAGCACAGAGGAATT 164
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 CTATACAGCTCCAATATTAACATTTTCAAGGGTGTTTAAGAAGAAAAGCACAGAGGAATT 163
Query 165 CTCATGTTTTCCTTACGTTATGACACTCTTTAACTGTTTGATATATACTTGGTACGGTTT 224
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 164 CTCATGTTTTCCTTACGTTATGACACTCTTCAACTGTTTGATTTATACTTGGTACGGTTT 223
Query 225 ACCGATTGTGAGTCATCTTTGGGAGAATCTTCCTCTCGTCACCATTAATGGAGTCGGCAT 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ACCGATTGTGAGTCATCTTTGGGAGAATCTTCCTCTCGTCACCATTAATGGAGTCGGCAT 283
Query 285 CCTTCTCGAATCTATCTTCATTTTCATATATTTCTACTACGCATCACCAAAAGAAAAGAT 344
||||||||||||||||||||||||||| ||||||| ||| || || || |||||||||||
Sbjct 284 CCTTCTCGAATCTATCTTCATTTTCATGTATTTCTGCTATGCGTCGCCCAAAGAAAAGAT 343
Query 345 TAAGGTTGGTGTTACATTTGTTCCGGTGATCGTTGGGTTCGGCTTAACGACAGCAATCTC 404
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 344 TAAGGTTGGTGTTACACTTGTTCCGGTGATCGTTGTGTTCGGCTTAACGACAGCAATCTC 403
Query 405 AGCCTTGGTATTTGACGACCATCGTCACCGAAAATCATTCGTCGGAAGTGTTGGCCTCGT 464
|||| |||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 404 AGCCGTGGTATTTGACGACCACCGCCACCGGAAATCTTTCGTCGGAAGTGTTGGCCTCGT 463
Query 465 GGCTTCCATCTCTATGTATGGTTCTCCTCTCGTCGTTATGAAGAAAGTGATAGAGACAAG 524
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 464 GGCTTCCATCTCCATGTACGGTTCTCCTCTCATCGTTATGAAGAAAGTGATAGAGACAAA 523
Query 525 AAGTGTGGAATACATGCCGTTTTACTTGTCCTTCTTCTCATTTCTGGCTAGTTCCCTTTG 584
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAGTGTGGAATACATGCCGTTCTACTTGTCCTTCTTCTCATTTCTGGCTAGTTCCCTTTG 583
Query 585 GTTGGCATATGGCTTACTCAGCCATGATCTCTTTCTTGCGTCACCTAATATGGTTGCGAC 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 584 GTTGGCATATGGCTTACTCAGCCATGATCTCTTTCTTGCGTCACCTAATATGGTGGCGAC 643
Query 645 TCCATTGGGAATTCTCCAACTTATCCTCTACTTCAAGTACAAGAATAAGAAGGATTTAGC 704
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 644 TCCATTGGGGATTCTCCAACTTGTCCTCTACTTCAAGTACAAGAATAAGAAGGAATTAGC 703
Query 705 ACCAACAACAATGGTGATCACCA-AACGAAATGATCATGATGACAAGAACAAAGCCACAC 763
|||||||||||||||||| | || || ||| |||| |||| || | |||||||||| |||
Sbjct 704 ACCAACAACAATGGTGATGAGCAGAAGGAA-TGATGATGA-GA-A-GAACAAAGCCGCAC 759
Query 764 TTGAGTTTGTTGTTGACGTTGATCGTAATAGTGATACCAATGAGAAGAATTCTAACAATG 823
||||| ||| ||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 760 TTGAGCTTGAAGTTGACGTTGATCGTGATAGTGATGCCAATGAGAAGAATTCCAACAATG 819
Query 824 C-------CTCATCGA-TCTAATATCTCGGATGTGTTTTCCCCAAAACTCCTTGTAAATC 875
| |||||||| | ||||||||||||||||||||||| || || | |
Sbjct 820 CATGTTAGCTCATCGAAT-TAATATCTCGGATGTGTTTTCCCTAA--CT--T-------C 867
Query 876 CAGAGATATTTTATCTAAACACCTCATATGTTGTACGTGCTTTCATTAAATAACGTTACA 935
||||||||||||| |||||||||||| |||||| | ||||||||| |||| ||||||
Sbjct 868 -AGAGATATTTTATGTAAACACCTCATGTGTTGT--G--CTTTCATTACATAATGTTACA 922
Query 936 TCA-CTCTATACGTTATGGTGGTGATGATATTGTTGATCATGTGAAAAATAAAGGTGGAA 994
||| ||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 923 TCATCTCTATAAGTTATGGTGGTGATGATATTGTTGATCACGTGAATAA-AAAGGTGGAA 981
Query 995 GTGCTATGT 1003
||||||||
Sbjct 982 ATGCTATGT 990
Score = 82.4 bits (44), Expect = 6e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 15 TTCCCTAATCTTTGTTCTTCCGGCCAATCAAATGGGTGATAAAC 58
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCCTAATCTTTGTTCTTCCGGCCAATCAAATGGGTGATAAAC 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5