BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53200.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350 544 4e-154
Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3 200 1e-50
Ahg933542 jgi|Araly1|933542|scaffold_401530.1 195 5e-49
Ahg933543 jgi|Araly1|933543|scaffold_401531.1 183 1e-45
> Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350
Length=321
Score = 544 bits (294), Expect = 4e-154
Identities = 312/321 (97%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 140 ATGGATAACACTGACCGTCGTCGCCGTCGTAAGCAACACAAAATCGCCCTCCATGACTCT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAACACTGACCGTCGTCGCCGTCGTAAGCAACACAAAATCGCCCTCCATGACTCT 60
Query 200 GAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAAGAAGATCTC 259
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GAAGAAGTTAGCAGTATCGAATGGGAGTTTATCAACATGTCTGAACAAGAAGAAGATCTC 120
Query 260 ATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGAAGAGTTCCT 319
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 ATCTTCCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTTCCT 180
Query 320 GGAAGACAACCAGAGGAGATAGAGAGATATTGGATAATGAGAAACAGTGAAGGCTTTGCT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAGACAACCAGAGGAGATAGAGAGATATTGGATAATGAGAAACAGTGAAGGCTTTGCT 240
Query 380 GATAAACGACGCCAGCTTCACTCATCTTCCCACAAACATACCAAGCCTCACCGTCCTCGC 439
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 GAGAAACGACGCCAGCTTCACTCATCTTCCCACAAACATACCAAACCTCACCGTCCTCGT 300
Query 440 TTTTCTATCTATCCTTCCTAG 460
|||||||| |||||||| |||
Sbjct 301 TTTTCTATTTATCCTTCTTAG 321
> Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3
Length=306
Score = 200 bits (108), Expect = 1e-50
Identities = 155/177 (88%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 191 CATGACTCTGAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAA 250
|||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 67 CATGACTCCGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAG 126
Query 251 GAAGATCTCATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGA 310
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 127 GAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 186
Query 311 AGAGT--TCCTGGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 364
||||| || ||| || || || | ||||| ||||||| |||||| |||||||||
Sbjct 187 AGAGTGGTC--GGACGA-AAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAAC 240
> Ahg933542 jgi|Araly1|933542|scaffold_401530.1
Length=351
Score = 195 bits (105), Expect = 5e-49
Identities = 154/177 (87%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 191 CATGACTCTGAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAA 250
|||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 92 CATGACTCCGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAG 151
Query 251 GAAGATCTCATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGA 310
||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 152 GAAGATCTCATCTCTCGAATGCACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 211
Query 311 AGAGT--TCCTGGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 364
||||| || ||| || || || | ||||| ||||||| |||||| |||||||||
Sbjct 212 AGAGTGGTC--GGACGA-AAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAAC 265
> Ahg933543 jgi|Araly1|933543|scaffold_401531.1
Length=348
Score = 183 bits (99), Expect = 1e-45
Identities = 176/213 (83%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 160 TCGCCGTCGTAAGC-AACACAAAATCGCCCTCCATGACTCTGAAGAAGTGAGCAGTATCG 218
|||| ||| ||||| ||| ||| || | || | |||||| ||||| || || ||| | |
Sbjct 52 TCGCAGTCCTAAGCAAAC-CAAGTTCACTCTACGTGACTCCGAAGAGGTAAGTAGTGT-G 109
Query 219 -AATGGGAGTTTATCAACATGACTGAACAAGAAGAAGATCTCATCTTTCGAATGTACAGA 277
|||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 110 AAATGGGAGTTTACCAATATGACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGA 169
Query 278 CTTGTCGGTGATAGGTGGGATTTGATAGCAGGAAGAGTTCCT-GGAAGACAACCAGAGGA 336
||||| ||||||||||||||||| |||||||||||||| | ||| || | || | ||
Sbjct 170 CTTGTTGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGG-TAGGACGAGAGGCAAAAGA 228
Query 337 GATAGAGAGATATTGGATAATGAGAAACAGTGA 369
||||||||||| ||||| ||||||||| ||||
Sbjct 229 CATAGAGAGATACTGGATTATGAGAAACTGTGA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5