BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53210.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916961 jgi|Araly1|916961|Al_scaffold_0008_1712 1799 0.0
> Ahg916961 jgi|Araly1|916961|Al_scaffold_0008_1712
Length=1101
Score = 1799 bits (974), Expect = 0.0
Identities = 1060/1101 (96%), Gaps = 8/1101 (1%)
Strand=Plus/Plus
Query 1 ATGCAGGAGATAATACCGGATTTTCTTGAAGAGTGTGAATTTGTCGACACTTCACTAGCC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGCAGGAGATAATACCGGATTTTCTTGAAGAGTGTGAATTCGTCGACACTTCACTAGCC 60
Query 61 GGAGATGATCTATTTGCCATCTTAGAGAGTCTTGAAGGTGCCGGAGAGATATCTCCGACA 120
||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 61 GGAGATGATTTATTTGCCATCTTAGAAAGTCTTGAAGGCGCCGGAGAGATATCTCCGACC 120
Query 121 GCTGCATCTACACCTAAAGATGGAACCACAAGTTCCAAGGAGTTAGTTAAGGATCAAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGCATCTACACCTAAAGATGGAACCACAAGTTCCAAGGAGTTAGTTAAGGATCAAGAT 180
Query 181 TATGAAAACTCATCTCCTaagaggaaaaagcaaagactagaaaccaggaaagaagaggac 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TATGAAAACTCATCTCCTAAGAGGAAGAAGCAAAGACTAGAAACCAGGAAAGAAGAGGAC 240
Query 241 gaagaagaagaagacggagacggag-a--agca---gaagaagataataagcaagaTGGG 294
|||||||||||||||||||| |||| | || | |||||||| |||||||||||||||
Sbjct 241 GAAGAAGAAGAAGACGGAGATGGAGAAGGAGAAGGTGAAGAAGAGAATAAGCAAGATGGG 300
Query 295 CAACA-AAAGATGTCTCATGTAACCGTGGAACGTAACCGGAGAAAGCAAATGAACGAGCA 353
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACACAAA-ATGTCTCATGTAACCGTGGAACGTAACCGGAGAAAGCAAATGAACGAGCA 359
Query 354 CTTAACCGTTTTGCGTTCTCTTATGCCTTGTTTCTACGTCAAACGGGGGGACCAAGCATC 413
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTAACTGTTTTACGTTCTCTTATGCCTTGTTTCTACGTCAAACGGGGGGACCAAGCATC 419
Query 414 GATCATAGGAGGAGTTGTGGAGTACATAAGCGAGTTACAACAAGTTCTCCAATCTTTGGA 473
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 420 GATCATAGGAGGAGTTGTGGAGTACATAAGCGAGTTACAACAAGTTCTTCAGTCTTTAGA 479
Query 474 AGCCAAGAAACAACGTAAAACCTACGCCGAAGTCCTAAGCCCGAGAGTTGTCCCGAGCCC 533
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 480 AGCCAAGAAACAACGTAAAACCTATGCCGAAGTCCTAAGCCCGAGACTTGTCCCGAGCCC 539
Query 534 TCGTCCTTCACCGCCTGTTCTAAGCCCAAGAAAACCGCCTCTTAGCCCGCGCATCAACCA 593
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 540 TCGTCCTTCACCGCCTGTTCTAAGCCCGAGAAAACCACCTCTTAGCCCGCGTATCAACCA 599
Query 594 CCACCAGATTCACCACCACCTACTTCTCCCTCCCATAAGTCCTCGAACACCTCAGCCAAC 653
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 600 CCACCAGATCCACCACCACCTCCTTCTCCCTCCTATAAGTCCTCGAACACCTCAGCCCAC 659
Query 654 AAGCCCATACCGGGCCATTCCACCGCAACTACCACTCATCCCACAGCCTCCGCTTCGCTC 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAGCCCATACCGGGCCATTCCACCGCAACTACCACTCATCCCACAGCCTCCGCTTCGCTC 719
Query 714 TTACAGCTCATTGGCCAGTTGCAGCAGCTTAGGAGATCCACCTCCATACTCTCCTGCTTC 773
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 720 TTACAGCTCATTGGCAAGTTGCAGCAGCTTAGGAGACCCACCTCCATATTCTCCTGCTTC 779
Query 774 ATCTTCTTCATCTCCTTCAGTTAGTAGTAACCATGAGAGTAGTGTGATCAATGAGCTTGT 833
| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 780 AACTTCTTCATCTCCTTCAGTTAGTAGTAGCCATGAAAGTAGTGTGATCAATGAGCTTGT 839
Query 834 TGCTAACTCAAAATCGGCTTTGGCTGATGTGGAAGTGAAGTTTTCAGGAGCTAACGTGCT 893
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 TGCTAACTCAAAATCGGCTTTGGCTGATGTGGAAGTGAAGTTCTCAGGAGCTAACGTGCT 899
Query 894 GCTCAAAACGGTGTCGCATAAGATCCCGGGACAAGTTATGAAGATAATTGCTGCTCTTGA 953
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 GCTCAAAACGGTGTCGCATAAGATCCCGGGACAAGTTATGAAGATAATTTCTGCTCTTGA 959
Query 954 AGATTTGGCTCTTGAGATTCTTCAGGTTAATATTAACACCGTCGACGAAACCATGCTTAA 1013
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 AAATTTGGCTCTTGAGATTCTTCAGCTTAATATTAACACCGTCGACGAAACCATGCTTAA 1019
Query 1014 TTCTTTCACCATCAAGATTGGAATTGAGTGCCAACTAAGTGCAGAAGAACTGGCTCAACA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCTTTCACCATCAAGATTGGAATTGAGTGCCAACTAAGTGCAGAAGAACTGGCTCAACA 1079
Query 1074 AATTCAGCAAACATTCTGCTA 1094
|||||||||||||||||||||
Sbjct 1080 AATTCAGCAAACATTCTGCTA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5