BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53220.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495395 jgi|Araly1|495395|fgenesh2_kg.8__1211__AT5G53220.2 2242 0.0
> Ahg495395 jgi|Araly1|495395|fgenesh2_kg.8__1211__AT5G53220.2
Length=2024
Score = 2242 bits (1214), Expect = 0.0
Identities = 1626/1815 (90%), Gaps = 67/1815 (4%)
Strand=Plus/Plus
Query 160 AGAGGAATTTTTGGTTATGGAGGTGAATTCGATGGGACTAAATTGTCGGTGTCTTGAGTT 219
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 254 AGAGGAATCTTTGGCTATGGAGGTGAATTCGATGGGACAAAATTGTCGGTGTCTTGAGTT 313
Query 220 AGAAGAAAGGGTTTTAAAAGGTGAAGAAAGGTACACTCACTTAGAAACAGAGTTGCAGAA 279
||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||
Sbjct 314 AGAAGAAAGGGTTTTAAAAGGTGAAGAAAAGTACATTGAGTTAGAAACAGAGTTGCAGAA 373
Query 280 ACGAAACAATGAGTTTGAATCACTTGAATTGAAGTTTAAAGAATTGGAATCAGAGAAGTT 339
||||||||| |||||||| ||||||||||||| | |||||||||||||||| ||||||||
Sbjct 374 ACGAAACAAAGAGTTTGAGTCACTTGAATTGAGGGTTAAAGAATTGGAATCGGAGAAGTT 433
Query 340 AGTAGTTGAAGAAGAG-TCAAGGAATCTTAAAGAATCTGAGGAAGGTGCATTGATTGAGC 398
|||||||||||||||| | || ||||||||||||||||||||||||| |||||||||| |
Sbjct 434 AGTAGTTGAAGAAGAGTTGAA-GAATCTTAAAGAATCTGAGGAAGGTTCATTGATTGATC 492
Query 399 AGATGATGGTGAACAG-AGCATTGGAGGTTGAGAAGCAGAGGATTGGAAAATAAAGTTTG 457
|||| ||||||||| | ||| |||||| ||||||| |||||||||||| |||||||||||
Sbjct 493 AGATTATGGTGAAC-GCAGCGTTGGAGTTTGAGAAACAGAGGATTGGAGAATAAAGTTTG 551
Query 458 AGAAACTTGTGGAGACTGTTCGAAAGTTAGATGAAATTGGTGGGTTTAGATATGGAGAAT 517
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGAAACTTGTGGAGACGGTTCGAAAGTTAGATGAAATTGGTGGGTTTAGATATGGAGAAT 611
Query 518 TTGAATTGGATGAGAATGTGAAGTTAGGGTTGGAGTTAGCTAGGATCAAGAATACAGAAT 577
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 612 TGGAATTGGATGAGAATGTGAAGTTAGGGTTGGAGTTAGCTAGGATCAAGAATACTGAAT 671
Query 578 CTTGTAAAGTGTTTAAAGATGA--CT-TGACTAGGGAAGGATTAGGTTATCATCAAGGAT 634
|||||||||||| ||| ||||| || ||||||||||||| ||||||||||||||| | |
Sbjct 672 CTTGTAAAGTGTATAATGATGATGCTCTGACTAGGGAAGGTTTAGGTTATCATCAAAG-T 730
Query 635 T-AGGCTCACCTTGTATGACCACACCGGTTAAAGACTATATATTAGGGAGAGACAGAGAT 693
| ||||||||||||||||||||| ||||||||||||||||| || || ||||| || |
Sbjct 731 TCAGGCTCACCTTGTATGACCACTCCGGTTAAAGACTATATCTT-GG-AGAGA--GACA- 785
Query 694 AGAGACAGAGACACCATGTCTTCTCGGAGACGAGTGAATAAGATGTTGTCGTTTGAAGAT 753
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 786 -GAGACAGAGACAACATGTCTTCTCGGAGACGAGTAAATAAGATGTTGTCGTTTAAAGAT 844
Query 754 GATGGTCACAAATTGACTGATGTAGTTGATTTATGTGATAGTGAAACAGAGCAGAGAAGT 813
||||| ||| |||||| |||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 845 GATGGCCACGAATTGATTGATTTAGTTGATTTATGTGATGGTGAAACAGAGGAGAGAAGT 904
Query 814 GAGGAGGAGGAATTTGCTGATGTTATGGATACTATAGAGGAG-GCAAATATTGGTGAGAA 872
||| | |||||| ||||||||||||||||||| |||||||| | || ||||||||||||
Sbjct 905 GAG-A--AGGAATCTGCTGATGTTATGGATACTTTAGAGGAGAG-AAGTATTGGTGAGAA 960
Query 873 TTATGAAGATGAAGATGTGGAAGCTTGTGATGCTAACACAAGTAGTCCTCTTTCTAGGCG 932
|||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||
Sbjct 961 TTATGAAGATGAAGATGTGGAACCTTGTGATGTTAACACAAGTACTCCTCTTTCGAGGCG 1020
Query 933 TAAGAGGAAGCGGGTTATTGCCAGCgatgatgatgatgatgctgatgatgatgatgaAGA 992
|||||||||||||||||||||||||||||| | ||||||| ||||||| | || |
Sbjct 1021 TAAGAGGAAGCGGGTTATTGCCAGCGATGA--A-GATGATG---ATGATGA--A-GAC-A 1070
Query 993 TAATATACCGATTTCAATACTCAAGAATTTGAAACCAACTAACCAAGAGATGTCAGATTT 1052
| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1071 -A-TATACCGATTTCACTACTCATGAATTTGAAACCAACTAACCAAGAGATGTCAGATTT 1128
Query 1053 GTTTGATACACCTAACAAAGGAGAGAGTGAGTCTAGAAGATTGAGTGGACAA-CGTCGAG 1111
| |||||||| | |||||||||||||||||||| || |||||||||||| || |||||||
Sbjct 1129 GGTTGATACATCAAACAAAGGAGAGAGTGAGTCCAGGAGATTGAGTGGA-AAGCGTCGAG 1187
Query 1112 TGTCGTCAAGACTGAATAAAAAGAGAGTTTCTG-AAGAGGTATCTGCTTCAACAGAGAGA 1170
|||||||||||||||||||| ||||||||| || ||||| |||||||| |||||||||||
Sbjct 1188 TGTCGTCAAGACTGAATAAACAGAGAGTTT-TGGAAGAGATATCTGCTACAACAGAGAGA 1246
Query 1171 CTTGTGGGAATCCCAACAACCGATAATGCCGAGGATGATGAGACAGAAGAAGAAGGTTCA 1230
||||||||||||| |||| |||||||| || |||||||||||||||||||| | | ||
Sbjct 1247 CTTGTGGGAATCCTGACAAGTGATAATGCAGACGATGATGAGACAGAAGAAGA-G-T-CA 1303
Query 1231 GAGAGTGAGGGTGAGAGTTTAGATGGGTTTATTATCGATGATGATGATAGTCAGGAGTCT 1290
|| | || | ||||||| |||||||||||| | ||||||||||||||| || |
Sbjct 1304 GA-A---AGCG--AGAGTTTGGATGGGTTTATTGT---TGATGATGATAGTCATGAAAGT 1354
Query 1291 GTCAGTGAAAAGTCTGATGAAATCGGGGTAGAGGAATCCGATGGAGAAGTTGGTTATGCT 1350
|||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||
Sbjct 1355 GTCAGTGAAAAGTCTGATGAAACCGGGGAAGAGGAATCTGATGGAGAACCTGGTTATGCT 1414
Query 1351 GATGTTATGTCAAGGTTAAGGAGGGAGAAGAAACCCGAGAAGCGTAAATGGGAGTATGAG 1410
|| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1415 GAAGTCATGTCAAGGTTAAGGAGGGACAAGAAACCCGAGAACCGGAAATGGGAGTATGAG 1474
Query 1411 GCAGATATGTTGGCAGATTTCGGTAAAGATCCTGAGCTTTGTATGAGAGCGGTTTGTGTT 1470
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1475 GCAGATATGCTGGCAGATTTCGGTAAAGATCCCGAGCTTTGTATGAGAGCGGTTTGTGTT 1534
Query 1471 CTGTTTAGGTTTCAAACAGAAGATGAAAAAGTGGAAAGATCAAGTCATGTCTCTAATGGT 1530
||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 1535 CTGTTCAGGTTTCAAACAGAAGATGAAAAGGTGGGAAGATCAAGTCATGTCAGTAATGGT 1594
Query 1531 CGCGGTTTCAGCAAGGTTGACGCTGTAAGGGGCACTAGCATTGCACTGTTTCTGACGGAT 1590
||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||
Sbjct 1595 CGCGGTTTCAGCAAGGTTGACGCTGAAAGGGGCACTAGCATAGCCCTATTTCTGACGGAT 1654
Query 1591 GGAGATTCCGCAGGCGATATGAAGAAATCCGTTGAGGAATTGAAA-GTTTTTGACTTTAA 1649
|||||| |||| || ||| |||||||||| |||||||| |||||| |||| | ||| |
Sbjct 1655 GGAGATCCCGCTGGTGATTTGAAGAAATCGGTTGAGGATTTGAAAAGTTTCA-AGTTTGA 1713
Query 1650 AGGCGT-AGAGAAATGCGAAGA-ATTAGCACGCAAATACTCTAAACAACTCTTCCAGATC 1707
|| ||| | ||||||||||| | ||||||| |||||||||| |||||||||||| |||||
Sbjct 1714 AGACGTTA-AGAAATGCGAA-ATATTAGCATGCAAATACTCGAAACAACTCTTCGAGATC 1771
Query 1708 TATAACAACAGAGAAGATCCATTCTTTACTCTTCCTCCATCTCCATGACTTGGAGA--AT 1765
||||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||
Sbjct 1772 TATAACAACAGAGAAGATCCATTCTTTGCTATTCCCCCATCTCCATGACTTGGAGGGTAT 1831
Query 1766 TAGCTAGTA---GTCAACAGCTAGTTTATGGTTATG-tttttttttt-ttttttGT--GG 1818
|| ||||| ||||| |||||||||||||| ||| |||||||||| |||||| | ||
Sbjct 1832 TA--TAGTATAAGTCAATAGCTAGTTTATGGTAATGGTTTTTTTTTTGTTTTTTTTTTGG 1889
Query 1819 TAAATTTTAGTCCCGTTTGAGATGAAAACCAGAGATTAATCTAATAGGA-TTAGAGTCTA 1877
|||| ||||||| ||||||||||||||||||||||||||||||| | | |||||| ||
Sbjct 1890 TAAACTTTAGTCTGGTTTGAGATGAAAACCAGAGATTAATCTAAT-GAAATTAGAGACTG 1948
Query 1878 AATTTACTTTTTAGGTGTAAATGGAAGGATGATTTGGATTATGATGATGACTGAAACATA 1937
|||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1949 AATTTACTTTTTGGGTGTAGATGGAAGGATGATTTGGATTATGATGATGACTTAAACACA 2008
Query 1938 GTTTTGAATAATATT 1952
|||||||||||||||
Sbjct 2009 GTTTTGAATAATATT 2023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5