BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53250.1

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495398 jgi|Araly1|495398|fgenesh2_kg.8__1214__AT5G53250.1         688    0.0  


> Ahg495398 jgi|Araly1|495398|fgenesh2_kg.8__1214__AT5G53250.1
Length=491

 Score =  688 bits (372),  Expect = 0.0
 Identities = 467/508 (92%), Gaps = 25/508 (5%)
 Strand=Plus/Plus

Query  12   TTTTTTCCTTGATTTTTCTGGTGAGATTCTACAAAACC--AA-AAGATTCCTTCGCCGGA  68
            |||||| |||||||||||||||||||||||||||||||  || |||||||||||||||||
Sbjct  1    TTTTTTTCTTGATTTTTCTGGTGAGATTCTACAAAACCAAAACAAGATTCCTTCGCCGGA  60

Query  69   ATAATCACCGGAGATAAAGATAAAGGAATGGCGTCCCTGAAATTTCCGTTGGAGATTCTC  128
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  61   ATAATCACCGGAGATAAAGA-AAAAGAATGGCGTCCCTGAAATTTCCGTTGGAGATTCTC  119

Query  129  GCCGTCTTCGTCATCATCTCCGTGATTCTTTTGCCGATTGCTCAAT-CTCATTCTTCTTC  187
            |||||||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct  120  GCCGTCTTCGTCATCATCTCCGTGATTCTTTTGCCGATTGCTCA-TGCTCAATCATCTTC  178

Query  188  GCCAGCTCCCGCACCCACCAGCGATGGAACATCGATAGATCAGGGGATAGCGTATGTTCT  247
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  179  GCCAGCTCCCGCACCCACCAGCGACGGAACATCGATAGATCAGGGGATAGCGTATGTTCT  238

Query  248  AATGATGGTGGCTTTGGCGTTGACTTATTTCATTCATTGACGTGATGGATCCGATCTATT  307
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  239  AATGATGGTGGCTTTGGCGTTGACTTATTTCATTCATTAACGTGATGGATCCGATC-ATT  297

Query  308  T-GTTCTTCCTCCATAATGGTTTGTCTTTCGTAGTGTTGTGTTACAATTCTTTTCTTTTT  366
            | |||||||||||| |||||||| | |   || || |      ||||||||||| |||||
Sbjct  298  TTGTTCTTCCTCCACAATGGTTT-T-T---GT-GT-T------ACAATTCTTTTTTTTTT  344

Query  367  G-GGTTTGTGACGTGAGATTTGTAGAAAATCATATTAGGTTTTGGTCCTCATGCTTTGTT  425
              |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  345  TTGGTTTGTGACGTGAGATTTGTAGAAAATCAAATTAGGTTTTGGTCCTCATGCTTTGTT  404

Query  426  CTGTTTTTGTTGGTTGCATTATTCGTGTACCttttttt-CTTTCTTGTGTAATGGAAAA-  483
            |||||||||||||||| |||||||||||| |||||||| ||| ||||| |||||||||  
Sbjct  405  CTGTTTTTGTTGGTTGGATTATTCGTGTAACTTTTTTTTCTT-CTTGTTTAATGGAAATT  463

Query  484  GCGTAATTATAATAATTATTATTCAAGG  511
            | |||||||||| |||||||||||||||
Sbjct  464  GTGTAATTATAAAAATTATTATTCAAGG  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18581771843


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5