BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53260.1
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916965 jgi|Araly1|916965|Al_scaffold_0008_1716 725 0.0
Ahg916966 jgi|Araly1|916966|Al_scaffold_0008_1717 569 5e-162
> Ahg916965 jgi|Araly1|916965|Al_scaffold_0008_1716
Length=534
Score = 725 bits (392), Expect = 0.0
Identities = 489/534 (92%), Gaps = 13/534 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCATCAAAAGATAG-TGCTAGTGTCACCAACATCTCCGTGGAGGAGCACTTTAG 59
|||||||||||||||||| | ||||||||||||||||||||| || || ||||| |||||
Sbjct 1 ATGGGTTCATCAAAAGAT-GATGCTAGTGTCACCAACATCTCTGTAGAAGAGCATTTTAG 59
Query 60 CGTCTCTCAGTCTAGCCCCGGTGGACAGTTTGTAGGCCCAACAGAAGAGATTTCCACCGC 119
||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 60 CGTCTCTCAATCTAGTCCTGGTGGACAGTTTGTAGGCCCAACAGAAGAAATTTCCACGGC 119
Query 120 AGCGGAAGCACTTATCGGGAGGTCAACGACATTAACGGAGGCTCTTAAAGCAGCATCCAT 179
||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||
Sbjct 120 GGCGGAAGCACTTATCGGGAGGTCGACAACATTAACGGAGGCTCTGAAAGCAGCAGCCAT 179
Query 180 GAATGTCGGCCACAAACCAGTTGAAACCACCGACGTGGCTGCCATAAAAGAGGTGGAAAC 239
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 180 GAATGTCGGCCACAAACCAGTGGAAACCACCGACGTAGCTGCCATAAAAGAGGTAGAAAC 239
Query 240 AAGGGCTATCGGA-G-G-CGATATAGAA---AGTGAAGGTGGTGTAACTGCTGTAGCAAG 293
||||||||||||| | | ||| |||||| | || ||||||||||| || || |||||
Sbjct 240 AAGGGCTATCGGAGGAGACGACATAGAAGGTACTGGCGGTGGTGTAACCGCCGTGGCAAG 299
Query 294 TAAGGCGGTTGCTCGTAACCAAAA-AATAGGAAAAGATAA-TGAGAAGACAAATCTCGGC 351
||||||| |||||||||| ||||| |||||||||||| || |||||||||||||||| ||
Sbjct 300 TAAGGCGATTGCTCGTAA-CAAAACAATAGGAAAAGA-AAGTGAGAAGACAAATCTCCGC 357
Query 352 GACGTTATCGCGGAGATTGATGTGAAAGTAACGAGGGACAGAGAAGTGACAAGTGAAGAC 411
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 GACGTTATCGCGGAGATTGATGTGAAAGTAACGAGAGACAGAGAAGTGACAAGTGAAGAC 417
Query 412 GCAGAAGCAGTGATTCGGGCTGAGCTGAATCATTCTCCTTTCAATAATATTATTCCTGGA 471
|||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 418 GCAGAAGCAGTGGTTCAAGCTGAGCTTAATCATTCTCCTTTCAAGAATATTATTCCTGGA 477
Query 472 GGTGTTGCTGAATCCGTCGCTGCAGCTTATAAACTTAATCACGATCCATCGTCT 525
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GGTGTTGCTGAATCCGTCGCTGCAGCTTATAAACTTAATCACGATCCATC-TCT 530
> Ahg916966 jgi|Araly1|916966|Al_scaffold_0008_1717
Length=480
Score = 569 bits (308), Expect = 5e-162
Identities = 394/437 (90%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 84 ACAGTTTGTAGGCCCAACAGAAGAGATTTCCACCGCAGCGGAAGCACTTATCGGGAGGTC 143
||||| || ||||||||||||| | |||||||| ||||| || |||||| ||||||||||
Sbjct 27 ACAGTATGCAGGCCCAACAGAACAAATTTCCACGGCAGCTGAGGCACTTGTCGGGAGGTC 86
Query 144 AACGACATTAACGGAGGCTCTTAAAGCAGCATCCATGAATGTCGGCCACAAACCAGTTGA 203
|||||| | || || ||||| ||||| || | || |||||||| | ||||||||| ||
Sbjct 87 GACGACACTGACAGAAGCTCTCAAAGCCGCGGCGATAAATGTCGGTCGCAAACCAGTAGA 146
Query 204 AACCACCGACGTGGCTGCCATAAAAGAGGTGGAAACAAGGGCTATCGGAGGCGATATAGA 263
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 147 AACCACCGACGTGGCTGCCATAAAAGAGGTGGAATCTAGGGCTATCGGAGGCGACATAGA 206
Query 264 AAGTGAAGGTGGTGTAACTGCTGTAGCAAGTAAGGCGGTTGCTCGTAACCAAAAAATAGG 323
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 AAGCCATGGTGGTGTAACTGCTGTAGCAAGTAAGGCGGTTGCTCGTAACCAAAAAATAGG 266
Query 324 AAAAGATAATGAGAAGACAAATCTCGGCGACGTTATCGCGGAGATTGATGTGAAAGTAAC 383
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 267 TAAAGAAAATGAGAAGACAAATCTCCGCGACGTTATTGCGGAGATTGATGTGAAAGTAAC 326
Query 384 GAGGGACAGAGAAGTGACAAGTGAAGACGCAGAAGCAGTGATTCGGGCTGAGCTGAATCA 443
||| || |||||||||||||||||||| |||||||||||| ||| ||||||||| |||||
Sbjct 327 GAGAGATAGAGAAGTGACAAGTGAAGATGCAGAAGCAGTGGTTCAGGCTGAGCTCAATCA 386
Query 444 TTCTCCTTTCAATAATATTATTCCTGGAGGTGTTGCTGAATCCGTCGCTGCAGCTTATAA 503
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 387 TTCTCCTTTCAATAATATTATTCCTGGAGGTGTTGCTGAATCCGTCACTGCAGCTTATAA 446
Query 504 ACTTAATCACGATCCAT 520
||| ||| | ||||||
Sbjct 447 ACTCAATTGCAATCCAT 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19344883623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5