BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53270.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916966 jgi|Araly1|916966|Al_scaffold_0008_1717 693 0.0
Ahg916965 jgi|Araly1|916965|Al_scaffold_0008_1716 486 9e-137
> Ahg916966 jgi|Araly1|916966|Al_scaffold_0008_1717
Length=480
Score = 693 bits (375), Expect = 0.0
Identities = 446/481 (93%), Gaps = 2/481 (0%)
Strand=Plus/Plus
Query 393 ATGATGTTCGGGTTCGGCCTTTTGAAACAGTATGCAGGCACAACAGAACAAATTTCCACG 452
|||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGATGTTTGCGTTCGATCTTTTGAAACAGTATGCAGGCCCAACAGAACAAATTTCCACG 60
Query 453 GCGGCTGAAGCGCTAGTCGGGAGGTCAACGACATTGACAGAAGCACTCAAAGCAGCGGCG 512
|| ||||| || || ||||||||||| |||||| |||||||||| |||||||| ||||||
Sbjct 61 GCAGCTGAGGCACTTGTCGGGAGGTCGACGACACTGACAGAAGCTCTCAAAGCCGCGGCG 120
Query 513 ATAAATGTCGGCCGTAAACCGGTAGAAACCACCGACTTGGCTGCCATAAAAGAGGTGGAA 572
||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 121 ATAAATGTCGGTCGCAAACCAGTAGAAACCACCGACGTGGCTGCCATAAAAGAGGTGGAA 180
Query 573 GCTAGGGCTATAGGAGGTGATATAGAAAGCGATGGTGGTGTAACCGCTGTAGCAAGTAAA 632
|||||||||| ||||| || ||||||||| ||||||||||||| ||||||||||||||
Sbjct 181 TCTAGGGCTATCGGAGGCGACATAGAAAGCCATGGTGGTGTAACTGCTGTAGCAAGTAAG 240
Query 633 GCGGTTGCTCGTAACCAAAAAATAGG-AGAAGATAATGAGAAGACAAATCTCGGCGACGT 691
|||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||||
Sbjct 241 GCGGTTGCTCGTAACCAAAAAATAGGTA-AAGAAAATGAGAAGACAAATCTCCGCGACGT 299
Query 692 TATCGCGGAGATTGATGTGAAAGTAACGAGAGATAGAGAAGTGACAAGTGAAGACGCAGA 751
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TATTGCGGAGATTGATGTGAAAGTAACGAGAGATAGAGAAGTGACAAGTGAAGATGCAGA 359
Query 752 AGCAGTGATTCGGGCTGAGCTGAATCATTCTCCTTTCAATAATATTATTCCTGGAGGTGT 811
||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGCAGTGGTTCAGGCTGAGCTCAATCATTCTCCTTTCAATAATATTATTCCTGGAGGTGT 419
Query 812 TGCTGAATCCGTCACTGCAGCTTATAAACTTAATTGCAATCCATGCAATGTATCTCTTTG 871
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 420 TGCTGAATCCGTCACTGCAGCTTATAAACTCAATTGCAATCCATGCAATCTATCTCTTTG 479
Query 872 A 872
|
Sbjct 480 A 480
> Ahg916965 jgi|Araly1|916965|Al_scaffold_0008_1716
Length=534
Score = 486 bits (263), Expect = 9e-137
Identities = 387/446 (87%), Gaps = 12/446 (3%)
Strand=Plus/Plus
Query 419 ACAGTATGCAGGCACAACAGAACAAATTTCCACGGCGGCTGAAGCGC-TAGTCGGGAGGT 477
||||| || |||| |||||||| |||||||||||||||| ||||| | || |||||||||
Sbjct 84 ACAGTTTGTAGGCCCAACAGAAGAAATTTCCACGGCGGCGGAAGCACTTA-TCGGGAGGT 142
Query 478 CAACGACATTGACAGAAGCACTCAAAGCAGCGGCGATAAATGTCGGCCGTAAACCGGTAG 537
| || ||||| || || || || |||||||| || || |||||||||| ||||| || |
Sbjct 143 CGACAACATTAACGGAGGCTCTGAAAGCAGCAGCCATGAATGTCGGCCACAAACCAGTGG 202
Query 538 AAACCACCGACTTGGCTGCCATAAAAGAGGTGGAAGCTAGGGCTAT---AGGAGGTGATA 594
||||||||||| | ||||||||||||||||| ||| | |||||||| ||||| || |
Sbjct 203 AAACCACCGACGTAGCTGCCATAAAAGAGGTAGAAACAAGGGCTATCGGAGGAGACGACA 262
Query 595 TAGAAAG--C-GATGGTGGTGTAACCGCTGTAGCAAGTAAAGCGGTTGCTCGTAACCAAA 651
||||| | | | |||||||||||||| || |||||||| ||| |||||||||| ||||
Sbjct 263 TAGAAGGTACTGGCGGTGGTGTAACCGCCGTGGCAAGTAAGGCGATTGCTCGTAA-CAAA 321
Query 652 A-AATAGGAGAAGATAA-TGAGAAGACAAATCTCGGCGACGTTATCGCGGAGATTGATGT 709
| ||||||| |||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 322 ACAATAGGAAAAGA-AAGTGAGAAGACAAATCTCCGCGACGTTATCGCGGAGATTGATGT 380
Query 710 GAAAGTAACGAGAGATAGAGAAGTGACAAGTGAAGACGCAGAAGCAGTGATTCGGGCTGA 769
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 381 GAAAGTAACGAGAGACAGAGAAGTGACAAGTGAAGACGCAGAAGCAGTGGTTCAAGCTGA 440
Query 770 GCTGAATCATTCTCCTTTCAATAATATTATTCCTGGAGGTGTTGCTGAATCCGTCACTGC 829
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 441 GCTTAATCATTCTCCTTTCAAGAATATTATTCCTGGAGGTGTTGCTGAATCCGTCGCTGC 500
Query 830 AGCTTATAAACTTAATTGCAATCCAT 855
|||||||||||||||| | ||||||
Sbjct 501 AGCTTATAAACTTAATCACGATCCAT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5