BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53280.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495401 jgi|Araly1|495401|fgenesh2_kg.8__1217__AT5G53280.1 1666 0.0
Ahg949918 jgi|Araly1|949918|scaffold_801805.1 699 0.0
> Ahg495401 jgi|Araly1|495401|fgenesh2_kg.8__1217__AT5G53280.1
Length=1085
Score = 1666 bits (902), Expect = 0.0
Identities = 1027/1088 (94%), Gaps = 5/1088 (0%)
Strand=Plus/Plus
Query 1 ACAATTAAAGTGAGAATTTTCCTGAAGAAGAAGAACttttgctttttttctgggtttgct 60
||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1 ACAATTAAAGTGAAAATTTTCCTGAAGAAGAAGAACTTTTGCTTTTTTT-TTTCCCT-CT 58
Query 61 tttttGTTGTGTCAATGAAATGGGAGAAATGGAGATCGAAGAAATCGAAGCTGTTCTTGA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTTTTGGTGTGTCAATGAAATGGGAGAAATGGAGATCGAAGAAATCGAAGCTGTTCTTGA 118
Query 121 GAAAATCTGGGATCTACATGACAAGCTTAGCGATGAGATTCACTTGATTTCGAAGTCTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAAAATCTGGGATCTACATGACAAGCTTAGCGATGAGATTCACTTGATTTCGAAGTCTCA 178
Query 181 CTTTCTCAAATCGGTTAAACCTTCAAATAGATCGGAGAAGAGAAAGAATCCTCACGGAAA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 179 CTTTCTCAAATCGGTTAAACCTTCTAATAGATCGGAGAAGAGAAAGAATCCCCACGGCAA 238
Query 241 TTCCGGCGAAGATAAGCGACCTGGTTATGTTTTCATCAAAGGATTCGCCGTCGATGATAA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 239 TTCCGGCGAAGATAAGCGACCGGGTTATGTTTTCATCAAAGGATTCGCCGTAGATGATAA 298
Query 301 CGACTCCACGATTCAGGAGGCGAAGAGTCTTAACGCAATTCGAACCGCTCTTGAGAACCT 360
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 CGACTCCACGATTCAAGAGGCGAAGAGTCTTAACGCTATTCGAACCGCTCTTGAGAACCT 358
Query 361 TGAAGACCAGCTCGAGTTTTTCCATACTATACATACACAGCAGCGAACAGAGAAAGATGT 420
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 359 TGAAGACCAGCTTGAGTTTTTCCATACTATACATACACAGCAACGAACAGAGAGAGATCT 418
Query 421 TGCGATTGCTCGGCTTGAACAGAGCAGGATATTACTAGCAATGAGATTAGCTGAACACCA 480
||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 419 TGCAATTGCTCGGCTTGAGCAGAGCAGGATATTACTGGCAATGAGATTGGCTGAACACCA 478
Query 481 CGGCAAGAACTATGGAGTCCTAGAGGAAGCTCTTGCATTTGTTGGGAGCATTAAATCCAA 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 479 CGGCAAGAACTATGGAGTCTTAGAGGAAGCTCTTGCATTTGTTGGGAGCATTAAAACCAC 538
Query 541 CTCGCATTACGTTTCACCTGATCACCTCTACGATTCCTCTCGAAACCCAGACGGAGCAAA 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 CTCGCATTACGTTTCACCTGATCACCTCTACGATTCCTCTCCAAACCCAGACGGAGCAAA 598
Query 601 CTCTATTCCAGATGGAATAGAGTCAAACTTTGTAATCAACGCCTTTGCCTCGACTTTCGG 660
||||| || | ||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 599 CTCTACACCTGCTGGAATAAAGTCAAACTTTGTGATCAACGCCTTTGCCTCAACTTTCGG 658
Query 661 GTTTGCCAAGAGAGCACTTGGATTCAACCATGTGAAAGGCGTACTTGGAAACGCTGCTAT 720
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 GTTTGCAAAAAGAGCACTTGGATTCAACCATGTGAAAGGTGTACTTGGAAACGCTGCTAT 718
Query 721 ATTTGCCATAAGCGTGGTCGCTATGCTACATCTTCACCAAGTGGCTACTAGTGAACATCA 780
||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 ATTCGCCATTAGCATGGTCGCTATGCTACACCTTCACCAAGTGGCTACTAGTGAACATCA 778
Query 781 TCTGCAGAAGAAAGAAGACAGATTCTACAGAAGCCAACAAAGGAAAACATACGGAAGAGA 840
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 TCTACAGAAGAAAGAAGACAGATTCTACAGAAGCCAACAGAGGAAAACATACGGAAGAGA 838
Query 841 TAAGTCTTCAGCTGACAGAAGTTTGGATCACTTGGACGTAATGATGGCTCGTGGTTAAGA 900
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 839 TAAGTCTTCAGGTGACAGAAGTTTGGACCACTTGGACGTGATGATGGCTCGTGGTTAAGA 898
Query 901 CCAGAGATCGAACTTGTCTACACGTGAGAAAA-CTAAAGAAGAGAAGAGATAATTGTT-G 958
|||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 899 CCAGGGATCAAACTTGTCTACACGTGAGAAAAACTAA-GAAGAGAAGAGATAATTGTTTG 957
Query 959 CTCTCATAGGTTTCGATATTATCAGCAAAAGGATAAGAATTTGGAGGCAAAGTGTTGGAA 1018
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 958 CTCTCCTAGGTTTCGATATTATCAGTAAAGGGATAAGAATTTGGAGGCAAAGTGTTGGAA 1017
Query 1019 TTTTCTGAGCTCGTCTGATGCAAATATTGTTCCTTTCTTCTAATTTTGATTTTCAAACAC 1078
|||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 1018 TTTTCTGACCTCATCTGATGCAAATATTGTTCTTTTCTTCTCGTTTTGATTTTCAATCAC 1077
Query 1079 TGTGGTTA 1086
||||||||
Sbjct 1078 TGTGGTTA 1085
> Ahg949918 jgi|Araly1|949918|scaffold_801805.1
Length=478
Score = 699 bits (378), Expect = 0.0
Identities = 435/463 (94%), Gaps = 2/463 (0%)
Strand=Plus/Plus
Query 457 AGCAATGAGATTAGCTGAACACCACGGCAAGAACTATGGAGTCCTAGAGGAAGCTCTTGC 516
|||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 17 AGCAATGAGATTGGCTGAACACCACGGCAAGAACTATGGAGTCTTAGAGGAAGTTCTT-C 75
Query 517 -ATTTGTTGGGAGCATTAAATCCAACTCGCATTACGTTTCACCTGATCACCTCTACGATT 575
||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 76 AATTTGTTGGAAGCATTAAAACCACCTCACATTACGTTTCACCTGATCACCTCTACGATT 135
Query 576 CCTCTCGAAACCCAGACGGAGCAAACTCTATTCCAGATGGAATAGAGTCAAACTTTGTAA 635
|||||| ||||||||||||||||||||||| ||| | ||||||| ||||||||||||| |
Sbjct 136 CCTCTCCAAACCCAGACGGAGCAAACTCTACTCCTGGTGGAATAAAGTCAAACTTTGTGA 195
Query 636 TCAACGCCTTTGCCTCGACTTTCGGGTTTGCCAAGAGAGCACTTGGATTCAACCATGTGA 695
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 196 TCAACGCCTTTGCCTCAACTTTCGGGTTTGCAAAAAGAGCACTTGGATTCAACCATGTGA 255
Query 696 AAGGCGTACTTGGAAACGCTGCTATATTTGCCATAAGCGTGGTCGCTATGCTACATCTTC 755
|||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 256 AAGGTGTACTTGGAAACGCTGCTATATTTGCCATTAGCATGGTCGCTATGCTACATCTTC 315
Query 756 ACCAAGTGGCTACTAGTGAACATCATCTGCAGAAGAAAGAAGACAGATTCTACAGAAGCC 815
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 316 ACCAAGTGGCTACTAGTGAACATCATCTACAGAAGAAAGAAGACAGATTCTACAGAAGCC 375
Query 816 AACAAAGGAAAACATACGGAAGAGATAAGTCTTCAGCTGACAGAAGTTTGGATCACTTGG 875
|||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 376 AACAGAGGAAAACATACGGAAGAGATAAGTCTTCAGGTGACAGAAGTTTGGACCACTTGG 435
Query 876 ACGTAATGATGGCTCGTGGTTAAGACCAGAGATCGAACTTGTC 918
|||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 436 ACGTGATGATGGCTCGTGGTTAAGACCAGGGATCAAACTTGTC 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5