BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53290.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949919 jgi|Araly1|949919|scaffold_801806.1 1502 0.0
> Ahg949919 jgi|Araly1|949919|scaffold_801806.1
Length=1086
Score = 1502 bits (813), Expect = 0.0
Identities = 1019/1114 (91%), Gaps = 31/1114 (3%)
Strand=Plus/Plus
Query 217 AGAGAGAGTCCATAAAAGAAACAGTAATGGACGAATATATTGATTTCCGACCATTGAAGT 276
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGTCCATAAAA-AAAAACTAATGGACGAATATATTGATTTCCGACCATTGAAGT 59
Query 277 ACACAGAGCACAAGACTTCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 336
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACACAGAGCACAAAACATCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 119
Query 337 GTGGTAAGTCATTGAAAAAGGTTAGTATTTGTTATACTGATCCTGACGCAACAGATTCAT 396
||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GTGATCAGTCATTGCGAAAGGTTAGTATTTGTTATACCGATCCTGACGCAACAGATTCAT 179
Query 397 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAAAAGATTCGTTA 456
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 180 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAACATATTCGTTA 239
Query 457 ACGAGATCACTGTTGAGCCTAGCTGTAACAACGTCGTCACCGGAGTTTCGATGAAAGATA 516
||||||||||||| ||||||||||| |||||| |||||||||||||||| || |||||||
Sbjct 240 ACGAGATCACTGTCGAGCCTAGCTGCAACAACATCGTCACCGGAGTTTCAATCAAAGATA 299
Query 517 GAAAGAGACTCTCTTCTTCCTCCGATGAAACTCAATCTCCGGCGTCGAGTCGTCAACGTC 576
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 300 GAAAGAGACTCTCTTCCTCCTCCGATGACACTCAATCTCCGGCGTCGAATCGTCAACGTC 359
Query 577 CTAATAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGTGGTGTTAGACAACGGC 636
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 360 C---TAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGCGGGGTTAGACAACGGC 416
Query 637 CATGGGGGAAATGGGCGGCGGAGATTAGAGATCCGGAGCAACGTCGGAGGATTTGGCTCG 696
| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 417 CTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCAGAGCAACGTCGGAGGATTTGGCTCG 476
Query 697 GGACTTTTGAGACGGCGGAGGAAGCTGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 756
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 GAACTTTTGAGACGGCGGAGGAAGCCGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 536
Query 757 GTGGACCGGACGCTTTAACTAATTTCTCCATACCGCCTCaagaagaggaagaagaagaag 816
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 537 GTGGACCGGACGCTTTAACTAATTTCTCTATACCGCCTCAAGAAGAAGAAGAAGAAGAAG 596
Query 817 aaCCGGAACCGGTTATTGAGGAGAAACCGGTTATTATGACGACGCCAACACCAACAACAT 876
|| | |||||| | | |||||| | ||||| | | ||| |||||||||
Sbjct 597 AA--G-AACCGG--A---A-------CCGGTTGTCCCGACGATGACGACAACAACAACAT 641
Query 877 CGAGTTCTGAATCAACTGAAGAAGATTTACAACATCTCTCATCTCCTACTTCGGTTCTCA 936
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 642 CGAGTTCTGAATCAACTGAAGAC--TTT-CAACATCTCTCATCTCCTACTTCGGTTCTCA 698
Query 937 ATCACCGGTCAGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCCGAAC 996
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 699 ATCTCCGGTCCGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCGGAAC 758
Query 997 CGGGGGTTTCAAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 1056
||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CGGAGATTTCTAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 818
Query 1057 ACGATTCATTTCCTTTGGATACTCCGTTTCTTGACAACTATTTCAATGAATCACCACCAG 1116
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 819 ACGATTCATTTCCTTTGGATACTCCGTTTCTCGACAACTATTTCAATGAATCACCACCGG 878
Query 1117 AGATGTCAATATTTGACCAACCAATGGATCAAATTTTCTGTGAAAATGATGATATCTTCA 1176
||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 879 AGATGTCGATATTTGATCAACCAATGGGTCAAGTTTTCACTGAAAATGATGATATCTTCA 938
Query 1177 ATGATATGTTGTTCTTGGGT-G-G-TGAAACTATGAACATTGAAGATGAGTTAACAAGTT 1233
||| |||||| ||||||| | | ||||| ||||||||||| |||||| ||||||||||
Sbjct 939 ATGCTATGTT---CTTGGGTAGTGGTGAAAGTATGAACATTGGAGATGATTTAACAAGTT 995
Query 1234 CTAGTATCAAAGATATGGGTTCAACGTTTAGTGATTTTGATGATTCATTGATATCAGATC 1293
| |||||||| || || ||||||| |||||||||||||||||||| | | || | |||||
Sbjct 996 CAAGTATCAATGACATTGGTTCAAAGTTTAGTGATTTTGATGATTTAAT-AT-T-AGATC 1052
Query 1294 TATTAGTTGCTTAATATGATGATGAGAGTGAAGA 1327
||||||||||||||||||||||| ||||||||||
Sbjct 1053 TATTAGTTGCTTAATATGATGATCAGAGTGAAGA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5