BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53290.1 Length=1455 Score E Sequences producing significant alignments: (Bits) Value Ahg949919 jgi|Araly1|949919|scaffold_801806.1 1502 0.0 > Ahg949919 jgi|Araly1|949919|scaffold_801806.1 Length=1086 Score = 1502 bits (813), Expect = 0.0 Identities = 1019/1114 (91%), Gaps = 31/1114 (3%) Strand=Plus/Plus Query 217 AGAGAGAGTCCATAAAAGAAACAGTAATGGACGAATATATTGATTTCCGACCATTGAAGT 276 ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 1 AGAGAGAGTCCATAAAA-AAAAACTAATGGACGAATATATTGATTTCCGACCATTGAAGT 59 Query 277 ACACAGAGCACAAGACTTCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 336 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 ACACAGAGCACAAAACATCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 119 Query 337 GTGGTAAGTCATTGAAAAAGGTTAGTATTTGTTATACTGATCCTGACGCAACAGATTCAT 396 ||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 120 GTGATCAGTCATTGCGAAAGGTTAGTATTTGTTATACCGATCCTGACGCAACAGATTCAT 179 Query 397 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAAAAGATTCGTTA 456 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 180 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAACATATTCGTTA 239 Query 457 ACGAGATCACTGTTGAGCCTAGCTGTAACAACGTCGTCACCGGAGTTTCGATGAAAGATA 516 ||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||||||| Sbjct 240 ACGAGATCACTGTCGAGCCTAGCTGCAACAACATCGTCACCGGAGTTTCAATCAAAGATA 299 Query 517 GAAAGAGACTCTCTTCTTCCTCCGATGAAACTCAATCTCCGGCGTCGAGTCGTCAACGTC 576 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 300 GAAAGAGACTCTCTTCCTCCTCCGATGACACTCAATCTCCGGCGTCGAATCGTCAACGTC 359 Query 577 CTAATAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGTGGTGTTAGACAACGGC 636 | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 360 C---TAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGCGGGGTTAGACAACGGC 416 Query 637 CATGGGGGAAATGGGCGGCGGAGATTAGAGATCCGGAGCAACGTCGGAGGATTTGGCTCG 696 | ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 417 CTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCAGAGCAACGTCGGAGGATTTGGCTCG 476 Query 697 GGACTTTTGAGACGGCGGAGGAAGCTGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 756 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 477 GAACTTTTGAGACGGCGGAGGAAGCCGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 536 Query 757 GTGGACCGGACGCTTTAACTAATTTCTCCATACCGCCTCaagaagaggaagaagaagaag 816 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 537 GTGGACCGGACGCTTTAACTAATTTCTCTATACCGCCTCAAGAAGAAGAAGAAGAAGAAG 596 Query 817 aaCCGGAACCGGTTATTGAGGAGAAACCGGTTATTATGACGACGCCAACACCAACAACAT 876 || | |||||| | | |||||| | ||||| | | ||| ||||||||| Sbjct 597 AA--G-AACCGG--A---A-------CCGGTTGTCCCGACGATGACGACAACAACAACAT 641 Query 877 CGAGTTCTGAATCAACTGAAGAAGATTTACAACATCTCTCATCTCCTACTTCGGTTCTCA 936 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 642 CGAGTTCTGAATCAACTGAAGAC--TTT-CAACATCTCTCATCTCCTACTTCGGTTCTCA 698 Query 937 ATCACCGGTCAGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCCGAAC 996 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 699 ATCTCCGGTCCGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCGGAAC 758 Query 997 CGGGGGTTTCAAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 1056 ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 CGGAGATTTCTAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 818 Query 1057 ACGATTCATTTCCTTTGGATACTCCGTTTCTTGACAACTATTTCAATGAATCACCACCAG 1116 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 819 ACGATTCATTTCCTTTGGATACTCCGTTTCTCGACAACTATTTCAATGAATCACCACCGG 878 Query 1117 AGATGTCAATATTTGACCAACCAATGGATCAAATTTTCTGTGAAAATGATGATATCTTCA 1176 ||||||| |||||||| |||||||||| |||| ||||| |||||||||||||||||||| Sbjct 879 AGATGTCGATATTTGATCAACCAATGGGTCAAGTTTTCACTGAAAATGATGATATCTTCA 938 Query 1177 ATGATATGTTGTTCTTGGGT-G-G-TGAAACTATGAACATTGAAGATGAGTTAACAAGTT 1233 ||| |||||| ||||||| | | ||||| ||||||||||| |||||| |||||||||| Sbjct 939 ATGCTATGTT---CTTGGGTAGTGGTGAAAGTATGAACATTGGAGATGATTTAACAAGTT 995 Query 1234 CTAGTATCAAAGATATGGGTTCAACGTTTAGTGATTTTGATGATTCATTGATATCAGATC 1293 | |||||||| || || ||||||| |||||||||||||||||||| | | || | ||||| Sbjct 996 CAAGTATCAATGACATTGGTTCAAAGTTTAGTGATTTTGATGATTTAAT-AT-T-AGATC 1052 Query 1294 TATTAGTTGCTTAATATGATGATGAGAGTGAAGA 1327 ||||||||||||||||||||||| |||||||||| Sbjct 1053 TATTAGTTGCTTAATATGATGATCAGAGTGAAGA 1086 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54430960105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5