BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53300.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028 793 0.0
Ahg945243 jgi|Araly1|945243|scaffold_701472.1 610 5e-174
Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 420 1e-116
> Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028
Length=447
Score = 793 bits (429), Expect = 0.0
Identities = 441/447 (99%), Gaps = 0/447 (0%)
Strand=Plus/Plus
Query 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCACCTACATCA 201
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60
Query 202 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGGGTCCT 261
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120
Query 262 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCGGATTAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180
Query 322 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240
Query 382 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300
Query 442 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360
Query 502 CCCGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGAAGC 561
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420
Query 562 TGGACTCAGAAGTATGCCATGGGCTAA 588
|||||||||||||||||||||||||||
Sbjct 421 TGGACTCAGAAGTATGCCATGGGCTAA 447
> Ahg945243 jgi|Araly1|945243|scaffold_701472.1
Length=500
Score = 610 bits (330), Expect = 5e-174
Identities = 413/454 (91%), Gaps = 2/454 (0%)
Strand=Plus/Plus
Query 134 TTTTGGATATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCAC 193
||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| |
Sbjct 13 TTTTGGATATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTC 72
Query 194 CTACATCATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAA 253
|||| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||
Sbjct 73 CTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCTACGATAA 132
Query 254 TGGGTCCTTCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTC 313
||||||| || || || |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 133 TGGGTCCATCGGAAAGCCCTTATTCTGGAGGAGTTTTCCTTGTAACCATCCATTTCCCTC 192
Query 314 CGGATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACA 373
| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 193 CAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACA 252
Query 374 TTAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCA 433
|||| ||||| || ||||| || |||||||||||||||||||||||||| ||||| || |
Sbjct 253 TTAATAGCAATGGGAGCATCTGTCTCGACATCTTGAAGGAGCAGTGGAGCCCTGCTCTGA 312
Query 434 CCATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATC 493
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 313 CAATTTCCAAGGTGCTGCTATCTATCTGTTCTTTGTTAACGGATCCAAACCCGGATGATC 372
Query 494 CTTTGGTGCCC-GAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACT 552
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 373 CTTTGGT-CCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACT 431
Query 553 GCACGAAGCTGGACTCAGAAGTATGCCATGGGCT 586
|| || | |||||| || ||||||||||||||||
Sbjct 432 GCTCGGACCTGGACCCAAAAGTATGCCATGGGCT 465
> Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4
Length=675
Score = 420 bits (227), Expect = 1e-116
Identities = 382/456 (84%), Gaps = 13/456 (3%)
Strand=Plus/Plus
Query 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGA---TCC-ACCTAC 197
||||||||||| |||||||||||||| |||||||||||||||| || ||| |||| |
Sbjct 67 ATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCT-C 125
Query 198 AT-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGG 256
| ||| | | |||||| |||||||||||||||||||| ||||| || || |||||||
Sbjct 126 CTGCAT-TTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGG 184
Query 257 GTCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCG 315
||||| |||||||||| ||| | || ||||| ||| || || ||||| || ||||||||
Sbjct 185 GTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCT 243
Query 316 GATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACAT 374
|| ||||||||||| ||||| ||||| || |||||||| |||||||| || ||| || ||
Sbjct 244 GACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATAT 302
Query 375 TAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCAC 434
||||||||||| ||||||||||| ||||| ||||| || || ||||| || || |||||
Sbjct 303 CAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCAC 362
Query 435 CATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCC 494
||||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| ||
Sbjct 363 CATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCC 422
Query 495 TTTGGTGCCCGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTG 553
|||||||| ||||| || ||||||||||| || ||| ||| |||||||||| ||||||
Sbjct 423 GTTGGTGCCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAGTACGAGGCCACTG 481
Query 554 CACGAAGCTGGACTCAGAAGTATGCCATGGGCTAAA 589
|| ||| |||||||||||||||||||||||||||||
Sbjct 482 CAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5