BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53310.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949921 jgi|Araly1|949921|scaffold_801808.1 957 0.0
> Ahg949921 jgi|Araly1|949921|scaffold_801808.1
Length=682
Score = 957 bits (518), Expect = 0.0
Identities = 620/668 (93%), Gaps = 11/668 (2%)
Strand=Plus/Plus
Query 63 CGTCGCCGGGAGGAATGAACCGGTTGAAGGAGCAAAAGGGG-CCGAAGTTCGACGGCGAA 121
||||||||||||||||| ||||||| ||||||| || |||| |||||||| ||||||||
Sbjct 7 CGTCGCCGGGAGGAATGGACCGGTTTAAGGAGC-AACGGGGACCGAAGTTTGACGGCGAT 65
Query 122 GAATCACCTCCACCTGA-TTT--T------GATGAAGATCGAAGTGTGGGTGAGGTAGAC 172
||||| || |||||||| ||| | ||||||||||| |||||||| |||||||||
Sbjct 66 GAATCTCCGCCACCTGATTTTGATGGCGGAGATGAAGATCGTAGTGTGGGGGAGGTAGAC 125
Query 173 GGAGGAGATCACACGCCATTCGCTGGAGGTAAAGTCAGAAGGAAAGCGTCTCGCTATAGA 232
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 126 GGAGGAGATCAGACGCCATTCGCTGGAGGTAAAGTTAGGAGGAAAGCGTCTCGCTATAGA 185
Query 233 GAGCATCGTGGTGACTATCTTCACGTTTCTTCTCGTCCTGGATTGATGCGAATTCTGGAG 292
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 186 GAGCATCGTGGTGACTATCTCCACGTCTCTTCGCGTCCTGGATTGATGCGAATTCTGGAG 245
Query 293 AAACAAGGTGATACATCGATTCTTTTTGCTGATAAAGTTTTGAAGTTCACCGGCTCGGGG 352
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 246 AAACAAGGTGATACGTCGATTCTTTTTGCTGATAAAGTTTTGAAGTTCACTGGCTCGGGG 305
Query 353 AAGATGAAACGGCGTATTTTTATCCTCACTGATTTTGCGATCTATCTAATTGATCCCGAG 412
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 306 AAGATGAAACGGCGTATTTTTATTCTCACTGATTTTGCGATCTATCTAATTGATCCGGAG 365
Query 413 ACTGAAGCTATGACCAGGAGAATTGCTTTGTCATCAGTAGAGAAGATGTGTTTAAGCAAA 472
||||||||||||||||||||||| || || || |||||||||| |||||||| || |||
Sbjct 366 ACTGAAGCTATGACCAGGAGAATAGCCCTGGCAGCAGTAGAGAAAATGTGTTTGAGTAAA 425
Query 473 TTGAGTGATAACTTCTTCGCTATCATTATTCCCACGGAATATGATCTCTTCATGGCCAGC 532
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 426 TTGAGCGATAACTTCTTCGCTATCATTATTCCCACGGAATATGATCTGTTCATGGCCAGC 485
Query 533 ACTAGGAAGACTGAGCTTGTTCAGGTCATGGTAGATGTCACTAAAAGTGCTTCTGACTAT 592
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 486 ACTCGGAAGACTGAGCTTGTTCAGGTCATGGTAGATGTGACTAAAAGTGCATCTGACTAT 545
Query 593 GAACTTGAAGTGCTTCTCTCTAACAGATTTGAGTACAATGCATCTGCCTCATTAGTAAAG 652
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 546 GAACTTGAAGTGCTTCTCTCCAACAGATTTGAGTACAATGCTTCTGCCTCATTAGTAAAG 605
Query 653 GAAGTTTCTTTTGAGGAATCTGAAGGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTA 712
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 606 GAAGTGTCTTTTGAGGAATCTGAAGGGGGTATCAAGACCAAATTTTTGTGGAAGTAACTA 665
Query 713 CATCTCAA 720
||||||||
Sbjct 666 CATCTCAA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5