BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53320.1
Length=2079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357577 jgi|Araly1|357577|fgenesh1_pg.C_scaffold_8001364 2780 0.0
> Ahg357577 jgi|Araly1|357577|fgenesh1_pg.C_scaffold_8001364
Length=1815
Score = 2780 bits (1505), Expect = 0.0
Identities = 1720/1821 (94%), Gaps = 25/1821 (1%)
Strand=Plus/Plus
Query 62 ATGAAGTGCCAAGTTGTTTTGA-TACTCATCGTAGTAATCTTCAACGTCTGCATAGAAGC 120
|||||||||||||||||||| | | ||||||| ||||||||||||| | |||||||||||
Sbjct 1 ATGAAGTGCCAAGTTGTTTT-AGTCCTCATCGGAGTAATCTTCAACATTTGCATAGAAGC 59
Query 121 AGAGACGATCAAAGAAGATAAACACACTCTTCTTCAATTCGTTAACAACATCAATCACTC 180
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 60 AGAGACGATCAAAGAAGATAAACACACACTTCTTCAATTTGTTAGCAACATCAATCACTC 119
Query 181 TCATTCACTCAACTGGTCACCAAGTCTTTCTATATGTACCAAATGGACCGGTGTTACTTG 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TCATTCACTCAACTGGTCACCAAGTCTTTCCATATGTACCAAATGGACCGGTGTTACTTG 179
Query 241 CAACTCCGATCATTCCAGTGTTGACGCTCTTCATTTAGCAGCCACGGGTCTACGCGGGGA 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 180 CAACTCCGATCATTCCAGTGTTGACGCTCTTCATTTAGCAGCCTCGGGTCTACGCGGGCA 239
Query 301 TATAGAGTTAAGCATCATCGCCAGGTTAAGCAATCTTCGGTTTCTCATTCTTAGTTCCAA 360
||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 240 TATCGAGTTAAGCATGATCGCCAGGTTAACCAATCTTCGGTTTCTCATTCTCAGTTCTAA 299
Query 361 CAACATCTCTGGAACTTTTCCTACAACTTTACAAGCTTTGAAGAACTTGACAGAGCTTAA 420
|||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 300 CAACATTTCTGGACCTTTTCCTACAAGTTTACAAGCTTTGAAGAACTTAACAGAGCTTAA 359
Query 421 ACTCGACTTCAACGAGTTTTCGGGTCCTTTGCCTTCTGATTTATCTTCTTGGGAGC-GTC 479
||||||||||||||||||||| |||| |||||||| |||||| ||||||||||| | |||
Sbjct 360 ACTCGACTTCAACGAGTTTTCTGGTCATTTGCCTTTTGATTTCTCTTCTTGGGA-CAGTC 418
Query 480 T-ACAAGTTCTTGATCTCTCTAATAATCGGTTTAATGGTAGTATACCATCTTCGATTGGG 538
| || |||||||||||||||||| ||||||||| |||||||||| || ||||||||||||
Sbjct 419 TAAC-AGTTCTTGATCTCTCTAAGAATCGGTTTGATGGTAGTATCCCGTCTTCGATTGGG 477
Query 539 AAGCTAACTCTG-TTACACTCTCTGAATCTTGCGTATAACAAGTTTTCTGGTGAGATTCC 597
|||||||||| | |||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 478 AAGCTAACTC-GATTACACTCTCTGAATCTTGCTTATAACATGTTTTCGGGTGAGATTCC 536
Query 598 TGATCTCCATAT-TCCAGGTTTGAAGCTGCTCAACTTAGCTCACAACAATCTAACAGGAA 656
|||||||||||| ||| ||| ||||||| ||| ||||||| |||||||| ||||||||||
Sbjct 537 TGATCTCCATATCTCC-GGTCTGAAGCTTCTCGACTTAGCGCACAACAACCTAACAGGAA 595
Query 657 CTGTACCTCAGTCATTGCAGAGATTTCCACTCTCAGCATTTGTCGGAAACAAAG-----T 711
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 CTGTACCAGAGTCATTGCAGAGATTTCCACTCTCAGCATTTGTCGGAAACAAAGTTTCCT 655
Query 712 -------GCTGGCGCCTGTTCATTCATCATTAAGGAAACACACGAAACATCACAACCATG 764
|||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CCGGAAAGCTGGCTCCGGTTCATTCATCATTAAGGAAACACACGAAACATCACAACCATG 715
Query 765 TAGTTCTTGGCATAGCATTAAGCGTGTGTTTTGCGATACTAGCTCTGCTTGCTATCTTAT 824
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 716 CAGTTCTTGGCATAGCATTAAGCGCGTGTTTTGCGATACTAGCTCTGCTTGCTATCTTAT 775
Query 825 TGGTAATCATCATCCATAATAGAGAAGAGCAAAGAAGATCTTCAAAGGACAAACCTAGCA 884
|||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 776 TGGT-A--ATCATCCATAATAGAGAAGAGCAAAGAAGATCTACAAAGGAAAAACCTAGCA 832
Query 885 AGAGGAGGAAGGATTCAGATCCAAACGTGGGTGAAGGAGATAACAAGATTGTGTTCTTCG 944
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 833 AGAGGAGGAAGGATTCAGATCCAAACGTAGGTGAAGGAGATAACAAGATTGTGTTTTTCG 892
Query 945 AAGGGAAGAATCTTGTCTTTGACCTAGAAGACTTGTTGAGAGCTTCTGCAGAAGTTTTAG 1004
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 893 AAGGGAAGAATCTTGTCTTTGACCTAGAAGACTTGTTGAGAGCTTCAGCAGAAGTTTTAG 952
Query 1005 GGAAGGGCCCGTTTGGGACAACCTACAAGGTTGATCTCGAGGACTCTGCGACCATCGTTG 1064
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 953 GGAAGGGCCCGTTTGGAACAACCTACAAGGTTGATCTCGAGGACTCTGCAACCATCGTTG 1012
Query 1065 TGAAAAGGATCAAGGAAGTGAGTGTACCTCAACGGGAATTCGAGCAGCAAATCGAAAATA 1124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1013 TGAAAAGGATCAAGGAAGTGAGTGTACCTCAGCGGGAATTCGAGCAGCAAATCGAAAATA 1072
Query 1125 TTGGCAGCATCAAGCATGAGAATGTTGCCACTTTAAGAGGATATTTCTACTCTAAGGATG 1184
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1073 TTGGCAGCATCAAACATGAGAATGTTTCCACTTTAAGAGGATATTTCTACTCTAAGGATG 1132
Query 1185 AGAAGCTCGTGGTTTATGATTACTACGAACATGGAAGTCTTTCAACATTGCTACACGGTC 1244
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1133 AGAAGCTCGTGGTTTATGATTACTATGAACAAGGAAGTCTTTCAACATTGCTACACGGTC 1192
Query 1245 AGAAAGGTCTCAGGGATCGGAAGCGTCTAGAATGGGAAACTAGACTGAATATGGTGTATG 1304
||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1193 AGAGAGGTCTTAGGGATCGGAAACCTCTAGAATGGGAAACTAGACTGAATATGGTGTATG 1252
Query 1305 GAACAGCAAGAGGAGTAGCTCATATCCACTCACAAAGCGGAGGTAAACTAGTCCACGGGA 1364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1253 GAACAGCAAGAGGAGTAGCTCATATCCACTCACAAAGCGGAGGGAAACTAGTCCACGGGA 1312
Query 1365 ACATAAAATCCTCAAACATTTTCCTCAACGGGAAAGGATATGGCTGCATATCTGGAACAG 1424
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 1313 ACATAAAGTCCTCAAACATTTTCCTCAACGCAAAAGGATATGGCTGCATCTCTGGAGCAG 1372
Query 1425 GAATGGCTACACTGATGCATTCATTACCGCGGCATGCAGTTGGCTATCGTGCACCAGAGA 1484
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||
Sbjct 1373 GAATGGCTACACTGATGCATTCACTACCCCGACATGCAGTTGGCTATCGAGCACCAGAGA 1432
Query 1485 TAACAGACACAAGAAAAGGGACTCAACCGTCTGATGTGTATAGTTTCGGGATATTGATAT 1544
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1433 TAACAGACACAAGAAAAGGGACTCAACCGTCGGATGTGTATAGTTTCGGGATTTTGATAT 1492
Query 1545 TCGAGGTACTAACAGGAAAATCAGAAGTGGCAAACCTGGTGAGGTGGGTGAACTCGGTGG 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TCGAGGTACTAACAGGAAAATCAGAAGTGGCAAACCTGGTGAGGTGGGTGAACTCGGTGG 1552
Query 1605 TTAGAGAAGAATGGACAGGAGAGGTGTTTGATGAGGAGCTTTTGAGGTGTACCCAAGTAG 1664
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1553 TTAGAGAAGAATGGACAGGAGAGGTGTTTGATGTGGAGCTTTTGAGGTGTACCCAAGTAG 1612
Query 1665 AGGAAGAGATGGTGGAGATGCTTCAGGTTGGTATGGTTTGCACAGCGAGATTACCAGAGA 1724
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1613 AGGAAGAGATGGTGGAAATGCTGCAGGTTGGTATGGTTTGCACGGCGAGATTACCAGAGA 1672
Query 1725 AGAGACCAAACATGATTGAGGTAGTGAGAATGGTGGAAGAGATAAGACCAGAGAAACTAG 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGAGACCAAACATGATTGAGGTAGTGAGAATGGTGGAAGAGATAAGACCAGAGAAACTAG 1732
Query 1785 CCAGCGGATACAGATCAGAGGTTTCCACAGGTGCGACAACAACTCCGATTGGAAGTCTAT 1844
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1733 CCAGCGGATACAGATCAGAGGTTTCCACAGGTGCAACAACAACTCCAATTGGAAGTCTAT 1792
Query 1845 CAGGATCTCCGTATATACTAT 1865
||||||| |||||||||||||
Sbjct 1793 CAGGATCGCCGTATATACTAT 1813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78199272985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5