BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53330.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949924 jgi|Araly1|949924|scaffold_801811.1 953 0.0
Ahg495407 jgi|Araly1|495407|fgenesh2_kg.8__1223__AT5G53340.1 163 2e-39
> Ahg949924 jgi|Araly1|949924|scaffold_801811.1
Length=706
Score = 953 bits (516), Expect = 0.0
Identities = 652/715 (91%), Gaps = 20/715 (3%)
Strand=Plus/Plus
Query 1 AGA-AAACAAACACACAACAATGGATTACGATTACAGAAACAAGTCTGGTGGTCCTTCTT 59
||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 3 AGAGAAA-AAACA-ACAACAATGGATTACGATTACAGAAACAAGTC---TGGTCCTTCGT 57
Query 60 ACCCTCGACCTATGTATGGACCTCCATCAACATCTCCTTCTCC-GTCATCTAACCATCCT 118
|||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 58 ACCCTCGACCTATGTACGGACCTCCATCAACATCTTCTTCTCCAG-CATCTAACCATCCT 116
Query 119 ATGTACGGTTACCCTAAGATCGGTCAACAAACCGGTCCCGGCCCA-CAGTTTTTCTCTCC 177
|||||||| |||||||||||||||||||||||||||| ||| || || |||||| ||||
Sbjct 117 ATGTACGGATACCCTAAGATCGGTCAACAAACCGGTCACGG-TCAGCAATTTTTCCCTCC 175
Query 178 GCCGGAGAGAAACTCTTCGTTTCAACATAACACTTCTCCTTCATCTGGAATAGGAATC-A 236
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 176 GCCGGAGAGAAACTCTTCGTTTCAACATAACACTTCTCCCTCATCTGGATTAGGAATCAA 235
Query 237 GAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGCCTCAGTTGTTGCCTCGAGTAG 296
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 236 G-GTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGCCTCAGTTGTTGCCTCGAGTTG 294
Query 297 GAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGATTAGAGAGGAAAGTTCTCGCGG 356
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 295 GAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGTTTAGAGAGGAAAGTTCTTGCGG 354
Query 357 AGGCAGAGAAAGATAATCCAGATTGGAGTAAATTTGGGAGTGAGAATCCACCGGCTAAGT 416
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 355 AGGCAGAGAAAGATAATCCAGATTGGAGTAAATTCGGGAGTGATAATCCACCGGCTAAGT 414
Query 417 TTCATG-AACCATCACCTTCTTCAGTGGGTCAAATGCA--G--GGTGTAGATCATGTAGT 471
||| || ||||| | || ||||||||| | || || | |||||||||| ||||||
Sbjct 415 TTC-TGGAACCAACGCCGTCTTCAGTGAATGGAA-GCTTTGTTGGTGTAGATCCTGTAGT 472
Query 472 GATGAAATATACTGCTTCTGGGCTCAACAGAGAAGCTGTCAACATAGCTGTTGCAAACTA 531
|||||||||| |||| |||||||| ||| ||||||||||||||| || |||||||||||
Sbjct 473 GATGAAATATGCTGCGTCTGGGCTGAACCCAGAAGCTGTCAACATTGCAGTTGCAAACTA 532
Query 532 TGGTGATAATCCCACAAAGGTTCAAGAATTTGCAAATGGGTTCACAGCGATACGGGAGAT 591
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 533 TGGTGATAATCCCACAAAGGTTCAAGAATTTGCAAATGGTTTCACAGCGATACGGGAGAT 592
Query 592 GGGTTTTCCGACAAACGCTGTTGCAGATGCTCTCTTCATGTTTGAGAACGACACTGATAA 651
||| ||||| |||||| | || |||||||||||||||||||||||||| || || || ||
Sbjct 593 GGGATTTCCAACAAACTCAGTCGCAGATGCTCTCTTCATGTTTGAGAATGATACCGAAAA 652
Query 652 GGCATTGGCACATTTGCTCCATGGTTCTTCCTAAATTTGGCTTTCAACTCTTTAT 706
||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 653 AGCACTGGCACATTTGCTCCATGGTTCTTCCTAAATTTGGCTTTCAACT-TTTAT 706
> Ahg495407 jgi|Araly1|495407|fgenesh2_kg.8__1223__AT5G53340.1
Length=1469
Score = 163 bits (88), Expect = 2e-39
Identities = 113/124 (91%), Gaps = 6/124 (5%)
Strand=Plus/Minus
Query 813 TTAACGTTTGTCGGTAAGAATATCTATTCCCACATCCAAATCCTAGACTTC-GTATAATG 871
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1469 TTAACGTTTGTCGGTAAGAATATCTAAGCCCACATCCAAATCCTAGACTTTTGTATAATG 1410
Query 872 CAATGCCAATAAAATGGCAAGTTTAGAATACATAGATGAAAT---G-GTGTAATTAGC-T 926
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
Sbjct 1409 CAATGCCAATAAAATGGCAAGTTTAGAATACATAGAAAAAATCAAGTGTGTAATTAGCCT 1350
Query 927 TTCT 930
||||
Sbjct 1349 TTCT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5