BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53340.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495407 jgi|Araly1|495407|fgenesh2_kg.8__1223__AT5G53340.1 2032 0.0
> Ahg495407 jgi|Araly1|495407|fgenesh2_kg.8__1223__AT5G53340.1
Length=1469
Score = 2032 bits (1100), Expect = 0.0
Identities = 1213/1266 (96%), Gaps = 13/1266 (1%)
Strand=Plus/Plus
Query 327 TGATTGCTTTGACTAAGAGATCTGATTTTGGATCTATTTCAATGGCGAGGAAAGGGTCGA 386
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 210 TGATTGCTTTGATTAAGAGATCTGATTTTGGATCTGTTTCAATGGCGAGGAAAGGATCGA 269
Query 387 GTATAAGATTATCGAGCTCGAGAATATCAACCCTTTTGCTCTT-TATGTTTGCAACTTTT 445
|||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 270 GTATAAGATTATCGAGCTCGAGAATATCTTCCCTTTTGCT-TTCAATGTTTGCAACTTTT 328
Query 446 GCTTCCTTCTATGTAGCAGGCCGTTTATGGCAAGAATCTCAAACTAGGGTTCATCTAATC 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GCTTCCTTCTATGTAGCAGGCCGTTTATGGCAAGAATCTCAAACTAGGGTTCATCTAATC 388
Query 506 AATGAGCTCGATAGAGTAACCGGACAGGGGAAATCTGCTATATCAGTGGATGATACTTTG 565
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 389 AAGGAGCTCGATAGAGTAACCGGACAGGGAAAATCTGCTATATCAGTGGATGATACTTTG 448
Query 566 AAGATCATAGCTTGCAGGGAACAGAAGAAGACACTAGCAGCTCTTGAGATGGAATTAAGT 625
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 449 AAGATCATAGCTTGCAGGGAACAGAAGAAGACATTAGCAGCTCTTGAGATGGAATTAAGT 508
Query 626 TCAGCTAGGCAAGAAGGCTTTGTTTCAAAAAGTCCCAAACTTGCTGATGGAACTGAAACC 685
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 509 GCAGCAAGGCAAGAAGGCTTTGTTTCAAAAAGTCCCAAACTTACTGATGGAACTGAAACT 568
Query 686 AAGAAAAGACCGTTAGTGGTTATCGGGATAATGACAAGTTTGGGTAACAAGAAGAAGAGG 745
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 569 AAGAAAAGACCCTTAGTGGTTATCGGTATAATGACTAGTTTGGGTAACAAGAAGAAGAGG 628
Query 746 GATGCAGTTCGTCAAGCATGGATGGGGACTGGTGCATCACTTAAAAAACTTGAAAGTGAA 805
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 629 GATGCAGTTCGTCAAGCATGGATGGGGACGGGTGCATCACTAAAAAAACTTGAAAGTGAA 688
Query 806 AAGGGTGTGATTGCAAGATTTGTTATTGGAAGAAGTGCAAATAAAGGGGACAGCATGGAC 865
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AAGGGTGTGATTGCACGATTTGTTATTGGAAGAAGTGCAAATAAAGGGGACAGCATGGAC 748
Query 866 AAGAGCATTGATACTGAAAATAGTCAAACCGATGACTTCATTATTCTCGATGATGTAGTT 925
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 749 AAGAGCATTGATGCTGAAAATAGTCAAACCGATGACTTCATTATTCTCGATAATGTAGTT 808
Query 926 GAGGCACCCGAGGAAGCTTCTAAGAAGGTAAAACTGTTCTTTGCCTACGCTGCAGATAGG 985
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 809 GAGGCACCCGAGGAAGCTTCTAAGAAGGTAAAACTGTTCTTTGCCTATGCTGCAGATAGG 868
Query 986 TGGGATGCACAGTTTTATGCAAAAGCCATCGACAATATCTACGTAAATATAGATGCTCTG 1045
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 869 TGGGATGCACAGTTTTATGCCAAGGCCATCGACAATATCTATGTAAATATAGATGCTCTG 928
Query 1046 GGAACTACGCTTGCAGCACATCTGGAAAACCCACGGGCTTACATCGGTTGCATGAAATCA 1105
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGAAGTACGCTTGCAGCACATCTGGAAAACCCACGGGCTTACATCGGTTGCATGAAATCA 988
Query 1106 GGCGAAGTCTTCTCAGAACCGAACCACAAATGGTATGAACCAGAGTGGTGGAAATTCGGT 1165
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GGCGAAGTTTTCTCAGAACCGAACCACAAATGGTATGAACCAGAGTGGTGGAAATTCGGT 1048
Query 1166 GACAAGAAAGCATACTTCCGGCATGCTTATGGGGAGATGTATGTTATAACGCACGCATTG 1225
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1049 GACAAGAAAGCATACTTCCGGCATGCTTATGGGGAGATGTATGTTATAACACACGCATTG 1108
Query 1226 GCTAGATTTGTATCGATCAATAGAGACATTCTTCATTCGTATGCTCATGATGACGTCAGC 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GCTAGATTTGTATCGATCAATAGAGACATTCTTCATTCGTATGCTCATGATGACGTCAGC 1168
Query 1286 ACGGGTTCATGGTTTGTGGGTCTTGATGTTAAGCATGTAGATGAAGGAAAGTTTTGCTGT 1345
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1169 ACGGGTTCATGGTTCGTTGGTCTTGATGTTAAGCATGTAGATGAAGGAAAGTTCTGCTGT 1228
Query 1346 TCTGCGTGGTCCTCAGAAGCCATATGCGCAGGAGTGTAGTAGAACCAAAGACGAATCCAA 1405
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1229 TCTGCGTGGTCCTCAGAAGCTATATGCGCAGGAGTGTAGTAGAACCAATGACGAATCCAA 1288
Query 1406 AGTGTGAGGCTCTTGGCTCTTTGGTGCTTATAGAGAAAGAAGAACAAATGACATTTGTCT 1465
|||| |||||| ||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1289 AGTGCGAGGCT-TTG-CTCTTTGGTGCTTATAGAGAAAGAAGAACAAATGA--TCTGTCT 1344
Query 1466 GAAGAAAG-CTAATTACAC-C---ATTTCATCTATGTATTCTAAACTTGCCATTTTATTG 1520
|| ||||| |||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1345 GA-GAAAGGCTAATTACACACTTGATTTTTTCTATGTATTCTAAACTTGCCATTTTATTG 1403
Query 1521 GCATTGCATTATACGAA-GTCTAGGATTTGGATGTGGGAATAGATATTCTTACCGACAAA 1579
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1404 GCATTGCATTATACAAAAGTCTAGGATTTGGATGTGGGCTTAGATATTCTTACCGACAAA 1463
Query 1580 CGTTAA 1585
||||||
Sbjct 1464 CGTTAA 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5