BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53360.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949927 jgi|Araly1|949927|scaffold_801814.1 736 0.0
> Ahg949927 jgi|Araly1|949927|scaffold_801814.1
Length=861
Score = 736 bits (398), Expect = 0.0
Identities = 564/638 (88%), Gaps = 35/638 (5%)
Strand=Plus/Plus
Query 716 GGTGTTTCAATGTTTTGGTCAATACTTTTGTCTTCATTTTGAAGCGTTTCAGCTCGGTAT 775
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GGTATTTCATTGTTTTGGACAATACTTTTGTCTTCATTTTGAAGCGTTTCAGCTCGGTAT 265
Query 776 GGCTCCAGTTTACATGGCGTTTCTGAGATTCATGGGCGATGAAGATGACGCACGAAACTA 835
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 266 GGCTCCAGTATACATGGCGTTTCTGAGATTCATGGGAGATGAAGAAGACGCACGAAAATA 325
Query 836 TACATACAGTTTAGAAGTTGGAGGCAGTGGGAGAAAACAGACATGGGAAGGGACACCAAG 895
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 326 CACTTACAGTTTAGAAGTTGGAGGCAGTGGGAGAAAACTCACATGGGAAGGAACACCAAG 385
Query 896 AAGTGTCAGAGATAGTCACAGGAA-AGTCAGAGACAGTCATGACGGTCTTATAATCCAAA 954
||||||| |||||||||||||||| | ||||||| ||||| |||||||| ||||||||||
Sbjct 386 AAGTGTCCGAGATAGTCACAGGAATA-TCAGAGAAAGTCACGACGGTCTAATAATCCAAA 444
Query 955 GAAACATGGCACTCTTCTTTTCCGGTGGAGACAAG-AAAGAACTGAAACTTA-GAGTCAC 1012
|||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||
Sbjct 445 GAAACATGGCACTCTTCTTTTCGGGTGGAGA-AAGGAAAGAACTGAAACTTAAGAGTCAC 503
Query 1013 TGGAAGAATCTGGAAAGAGCAACAGAATCCAGATTCTGGTGTTTGCATA--A--CCTCTA 1068
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 504 CGGAAGAATCTGGAAAGAGCAACAGAATCCAGATTCTGGTGTTTGCATACCAAACCTCT- 562
Query 1069 TGTGTAGTAGCTGAATCAAAATCAGCCAACCCTTCAAACCTATCTTAAGGTGTTCGTTCG 1128
|||| |||||| |||||||| | |||||| ||||||||||||||| ||||||||| ||
Sbjct 563 -GTGT-GTAGCTAAATCAAAACCTGCCAACTCTTCAAACCTATCTTCAGGTGTTCGATC- 619
Query 1129 ATTTCTTCAATTCGATTTTGTTTCGGGTT-TGTGTGTTGTTTTGGTCCAGAATCCAGATA 1187
| |||| ||| ||||| |||||||||| | |||||| |||| | | |||||| |
Sbjct 620 -T--CTTCGATTTGATTTAGTTTCGGGTTCT-TGTGTTTTTTT--T--A---TCCAGACA 668
Query 1188 GCTTCTT-TACATTCAAAAGTGTATTTAGAGAAGTA-AAAAGAGTTGTTCCATTTGCCAG 1245
||||||| | | |||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 669 GCTTCTTGT-CGTTCAAAAGTGTATTTAGAGAAGAAGAAAAGAGTTGTTCCATCTGCCAG 727
Query 1246 AAATGTGCAGA-AGGTCACAAAAGTTGCAAT--A-AC---TTCCAAAGATTGAATATTTC 1298
||||||||||| ||||| ||||||||||||| | || ||||||||||||||| ||||
Sbjct 728 AAATGTGCAGACAGGTCGCAAAAGTTGCAATCTACACAACTTCCAAAGATTGAATCTTTC 787
Query 1299 CATAAATGTATATATTCACATGGTAAGATCTGAGCAAA 1336
||||||||||||| || | || ||||||||| ||||||
Sbjct 788 CATAAATGTATATCTTAATATTGTAAGATCTAAGCAAA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5