BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53370.1
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495409 jgi|Araly1|495409|fgenesh2_kg.8__1225__AT5G53370.1 3062 0.0
> Ahg495409 jgi|Araly1|495409|fgenesh2_kg.8__1225__AT5G53370.1
Length=1965
Score = 3062 bits (1658), Expect = 0.0
Identities = 1868/1969 (95%), Gaps = 16/1969 (1%)
Strand=Plus/Plus
Query 1 AGAGCCTTCCACATC-TCCTTTGTTCCCTTAACAAA--C-TCTAAACC-aaaaaaaaaaa 55
||||||||||||||| | |||||||||| ||||||| | |||||||| |||||||||||
Sbjct 1 AGAGCCTTCCACATCAT-CTTTGTTCCCATAACAAACTCTTCTAAACCAAAAAAAAAAAA 59
Query 56 aaaa-a--aCTATGGGTTACGACAGGCTCGGTCCATCCGGACCATCAAACCCGAACCAGA 112
|||| | || ||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 60 AAAACACGACAATGGGTTACGATAGGCTCGGTCCATCCGGACCATCAGACCCGAACCAGA 119
Query 113 AGGA-CCCTGCCACGTCACTCCCGGAACTACAGAAGAAAACTAAAACGAAGCTGATTCTC 171
| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 A-GATCCCTGCCACGTCAGTCCCGGAGCTACAGAAGAAAACTAAAACGAAGCTGATTCTC 178
Query 172 TTCACTTTGGCCGTTTTGGTAGTTGGAGTAG-TCTGCTTCGGTATCTTTGCCGGCATCCG 230
||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||
Sbjct 179 TTCACTTTGGCCGTTTTAGTCGTTGGAGT-GATCTGCTTCGGTATCTTTGCCGGCATCCG 237
Query 231 AGCCGTAGACTCGGGTAAAACCGAGCCGAAACTAACCCGTAAACCGACCCAAGCAATCTC 290
|||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 238 AGCCGTAGGCTCGGGCAAAACCGAACCAAAACTAACCCGTAAACCGACCCAAGCAATCTC 297
Query 291 CCGAACCTGTAGCAAATCCTTATACCCGAACCTATGCATCGACACACTTCTTGACTTTCC 350
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 298 CCGAGCCTGTAGCAAATCCTTATACCCGAACCTATGTATCGACACACTTCTTGATTTTCC 357
Query 351 GGGATCTTTAACCGCCGACGAGAACGAGCTCATTCACATATCATTCAACGCAACGCTTCA 410
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 GGGATCTTTAACCGCCGACGAGAACGAACTCATTCACATATCATTCAACGCAACGCTTCA 417
Query 411 AAAATTCAGCAAAGCTCTTTATACTTCTTCGACGATCACATACACTCAGATGCCCCCACG 470
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 AAGATTCAGCAAAGCTCTATATACTTCTTCGACGATCACATACACTCAGATGCCGCCACG 477
Query 471 TGTACGGTCAGCTTACGATTCTTGCCTTGAGTTACTTGATGATTCAGTGGACGCGCTCAC 530
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 478 TGTACGGTCAGCTTACGATTCTTGCCTTGAGTTACTTGATGATTCAGTCGACGCGCTAAC 537
Query 531 ACGCGCTCTTTCCTCCGTCGTTGTCGTCTCCGGAGATGAGTCTCATTCCGATGTGATGAC 590
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 ACGCGCTCTCTCCTCCGTCGTTGTTGTCTCCGGAGATGAGTCTCATTCCGATGTGATGAC 597
Query 591 GTGGCTTAGCTCTGCGATGACTAACCACGACACTTGCACTGACGGATTCGATGAAATTGA 650
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 598 GTGGCTTAGCTCTGCCATGACCAACCACGACACTTGCACTGACGGATTTGATGAAATTGA 657
Query 651 AGGTCAAGGAGGAGAAGTGAAGGATCAAGTGATCGGAGCGGTTAAAGATTTGTCGGAGAT 710
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 AGGTCAAGGAGGAGGAGTGAAGGATCAAGTGATCGGAGCGGTTAAAGATTTATCGGAGAT 717
Query 711 GGTGAGTAATTGTTTGGCTATATTCGCCGGAAAAGTTAAGGATTTATCTGGAGTTCCGGT 770
||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 718 GGTGAGTAACTGTTTGGCGATATTCGCCGGAAAAGTTAAAGATTTGTCTGGAGTTCCGGT 777
Query 771 GGTGAATAATAGGAAGTTACTTGGGACTGAAGAAACAGAGGAATTACCTAATTGGTTGAA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGTGAATAATAGGAAGTTACTTGGGACTGAAGAAACAGAGGAATTACCTAATTGGTTGAA 837
Query 831 GAGAGAAGACAGAGAGCTTCTTGGTACTCCAACGTCGGCGATTCAAGCTGATATCACGGT 890
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 838 GAGAGAAGACAGAGAGCTTCTTGGTACTCCGACGTTGGCGATTCAAGCTGATATTACGGT 897
Query 891 GTCGAAAGACGGTAGCGGAACGTTTAAGACGATCGCGGAGGCGATCAAGAAAGCCCCGGA 950
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 898 ATCGAAAGACGGTAATGGAACGTTTAAGACGATCGCGGAAGCGATCAAGAAAGCTCCGGA 957
Query 951 GCATAGTAGCCG-ACGATTCGTCATCTACGTTAAAGCAGGAAGATACGAAGAAGAGAATC 1009
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 GCATAGTAGCCGTA-GATTCGTCATCTACGTTAAATCAGGAAGATACGAAGAAGAGAATC 1016
Query 1010 TGAAAGTTGGTAGGAAGAAGACAAACTTGATGTTCATCGGGGACGGCAAGGGTAAAACGG 1069
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1017 TGAAAGTTGGGAGGAAGAAGACAAACTTGATGTTCATCGGTGACGGCAAGGGTAAAACGG 1076
Query 1070 TCATAACCGGTGGGAAAAGTATCGCCGATGATCTAACTACTTTTCACACCGCCACTTTCG 1129
||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 1077 TCATAACCGGTGGAAAAAGCATTGCCGATGATCTAACTACTTTTCACACCGCAACTTTCG 1136
Query 1130 CTGCGACTGGTGCTGGATTTATAGTGAGGGACATGACGTTTGAGAATTACGCCGGACCGG 1189
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 CTGCGACTGGTGCTGGATTTATAGTGAGGGACATAACGTTTGAGAATTACGCCGGACCGG 1196
Query 1190 CTAAGCATCAGGCCGTGGCACTCCGTGTTGGTGGAGACCACGCGGTGGTTTACCGTTGCA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTAAGCATCAGGCCGTGGCACTCCGTGTTGGTGGAGACCACGCGGTGGTTTACCGTTGCA 1256
Query 1250 ACATTATCGGTTACCAAGACGCGCTTTACGTACATTCTAACCGACAGTTTTTCCGCGAAT 1309
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1257 GCATAATCGGTTACCAAGACGCTCTTTATGTACATTCTAACCGACAGTTTTTTCGCGAAT 1316
Query 1310 GCGAAATTTATGGAACGGTCGATTTTATATTCGGGAATGCGGCTGTGATCTTACAGAGTT 1369
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1317 GCGAAATTTATGGAACGGTCGATTTTATATTCGGGAATGCAGCTGTGATATTACAGAGTT 1376
Query 1370 GTAACATTTATGCGCGTAAACCAATGGCTCAGCAGAAGATTACTATTACGGCTCAGAACC 1429
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1377 GTAACATCTATGCGCGTAAACCGATGGCTCAGCAGAAGATTACTATCACGGCTCAGAACC 1436
Query 1430 GAAAAGATCCGAATCAGAATACGGGGATTTCGATTCATGCTTGTAAGCTACTAGCAACAC 1489
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || |
Sbjct 1437 GAAAAGATCCGAATCAGAACACGGGGATTTCGATCCATGCGTGTAAGCTACTAGCTACGC 1496
Query 1490 CGGATCTTGAAGCCTCTAAGGGTAGTTATCCGACGTATCTCGGCCGTCCGTGGAAGTTGT 1549
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1497 CGGATCTTGAAGCCTCTAAGGGTAGTTATCCGACTTATCTCGGCCGTCCGTGGAAGTTGT 1556
Query 1550 ATTCTAGAGTTGTGTACATGATGTCGGATATGGGTGACCATATTGACCCGCGAGGATGGT 1609
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1557 ATTCTAGAGTTGTGTACATGATGTCGGATATGGGCGACCATATTGACCCGCGAGGATGGT 1616
Query 1610 TGGAGTGGAATGGTCCGTTTGCATTGGACTCGTTGTACTATGGTGAGTATATGAACAAAG 1669
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1617 TGGAGTGGAACGGTCCGTTTGCATTGGACTCATTGTACTATGGTGAGTATATGAACAAAG 1676
Query 1670 GGTTGGGTTCAGGAATTGGTCAACGAGTCAAATGGCCTGGTTATCATGTTATTACCTCAA 1729
|| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1677 GGCCGGGTTCAGGAATGGGTCAACGAGTCAAGTGGCCGGGTTATCATGTTATTACCTCAA 1736
Query 1730 CGGTAGAGGCTAGTAAGTTTACGGTGGCTCAGTTCATTTCTGGTTCTTCGTGGTTGCCAT 1789
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CCGTAGAGGCTAGCAAGTTTACGGTGGCTCAGTTCATTTCTGGTTCTTCGTGGTTGCCAT 1796
Query 1790 CCACCGGTGTGTCCTTCTTCTCCGGGTTGTCACAATAGATTGTCTCAGCCTTGTATGTTA 1849
| ||||| ||| ||||||||||||||||||||||||||| || ||| ||||||||||| |
Sbjct 1797 CAACCGGCGTGGCCTTCTTCTCCGGGTTGTCACAATAGACTGCCTCGGCCTTGTATGTAA 1856
Query 1850 CGTATACGAATGATTTTATGTACAAACTCAAGATCTGTAATATAGTCCATAAGCCATTTT 1909
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1857 CGTATACGAAAGATTTTATGAACAAACTCAAGATTTGTAATATAGTCCATAAGCCATTTT 1916
Query 1910 AAGTGTACTTATTATA-TGACAGGACATCTTCTTGAATGAAATAAAGAT 1957
||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1917 AAGTGTACTTATTGTAATGACAGGACATCTTCTTGAATGAAATAAAGAT 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74352158240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5