BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53380.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495410 jgi|Araly1|495410|fgenesh2_kg.8__1226__AT5G53380.1 1781 0.0
Ahg947791 jgi|Araly1|947791|scaffold_704020.1 270 2e-71
> Ahg495410 jgi|Araly1|495410|fgenesh2_kg.8__1226__AT5G53380.1
Length=1446
Score = 1781 bits (964), Expect = 0.0
Identities = 1282/1430 (90%), Gaps = 44/1430 (3%)
Strand=Plus/Plus
Query 1 ATGACGAAGGAAG-AAGTAGAGGAGGAGCCTCTAAGCCCGATGGCTCGGTTATTCCAGTC 59
|||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 1 ATGACGAAGG-AGAAAGTAGAGGAGGAGCCTCTCAGCCCGATGGCTCGGCTATTCCAATC 59
Query 60 ACCGGGGATAGAAAATTGCATTATCACGATGATTGGTTTCAAAGCCAAGATTAATCCTGA 119
||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||| |||
Sbjct 60 GCCGGGGATAGACAATTGCATTGTCACGATGATCGGTTTCAAGGCCAAGATTAATCGTGA 119
Query 120 CATCATTCTAGATGACTTGAAGCATAACGTTTCCAAGCATCCTCGTTTCTGTAGTAAATT 179
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 120 CATCATTCTAGATGAATTGAAGCAAAACGTTTCCAAGCATCCTCGTTTCTGTAGT--A-- 175
Query 180 GGTAATTGCCACACATACAAATTATGATGGTG-AGAGATGGATGAAGACCAAAGTCAATG 238
|| || | | | ||||||||| | ||||||||||| | ||||||||||
Sbjct 176 ---AACTG-------T-C--A-GATGATGGTGCA-AGATGGATGAAAATAAAAGTCAATG 220
Query 239 TAGAAGACCATGTATTTGTACCAGACATAGACCTACAAGAGATTAACAAAGATGGAGATG 298
|||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 221 TAGAAGACCATGTATTTGCACCAGACATAGACCCACAAGAGATCAACAAAGATGGAGATA 280
Query 299 GCTTCGTCGATGACTATGTCTCGCGTCTAAC-ATTGAGTCCTCTCGATAAATCGAAACCA 357
| ||||| |||||||||||||| |||||||| || | ||||||||||||||| ||||||
Sbjct 281 GTTTCGTGGATGACTATGTCTCTCGTCTAACGCTT-ATTCCTCTCGATAAATCAAAACCA 339
Query 358 TTGTGGGATATTCATATCCTCAATGTCAAAACATCTGATGCAGAAGCGGTCGGTGTAATG 417
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 340 TTGTGGGATATTCACATCCTCAATGTCAAAACATCTGATGCAGAAGCGGTTGGTGTAATG 399
Query 418 AGATGTCATCATTCTTTGGCAGATGGAATGTCCTTGATGTCACTCTTGGTGGCATGTACC 477
||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||
Sbjct 400 AGATGTCATCATTCTTTGGCAGATGGAATGTCCTTGATGTCTCTCTCGGTGGCGTTTACC 459
Query 478 CGAAAAACATCAAATCTTGAGTCATTTCCTACCATTCCTGCCATAAAACGGCGTGAACAA 537
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 460 CGAAAAACATCAGATCTTGAGGCATTTCCTACCATTCCTGCCATAAAACGGCGTGAACAA 519
Query 538 ATGATGTCGCATCG-CTTTGGAAACAAAGGCTGG-TATTCAAGATCGATAAACGCAGTTT 595
|| ||||| || || ||| ||||||||||| ||| | || ||||| |||| |||| |||
Sbjct 520 ATTATGTCACAACGTCTT-GGAAACAAAGGATGGCTTTT-AAGATGGATATTCGCAATTT 577
Query 596 A-TTATGCCGTGAGATTAATTTGGAATACAATTGTGGATCTTCTACTGCT-TTGGGCGAC 653
| || ||| || ||||| ||||||||||| ||||| ||||||||| |||| |||| ||||
Sbjct 578 ACTT-TGCGGTTAGATTGATTTGGAATACCATTGTAGATCTTCTATTGCTCTTGG-CGAC 635
Query 654 TAGTCtttttttt-AAGGATACAGAGACGCCTATTAGCGAGGGT---ATTGGATCCGGGA 709
|| | | ||| | |||||||||||||||||| ||| ||||||| | || || ||||
Sbjct 636 TA-TAATGTTTCTGAAGGATACAGAGACGCCTCTTAACGAGGGTGCCAGTG--TC-GGGA 691
Query 710 ATAATGCAAGGAGATTTTATCACCGAACCGTCTCATTGGATGATATTAAACTGATAAAAA 769
|||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||| |
Sbjct 692 ATAATGCAAGAAGATTTTATCACCGAACTATCTCATTGGATGATATTAAGCTTATAAAGA 751
Query 770 ATGCTATGAAGATGACTATCAATGATGTTCTACTTGGAGTTACACAAGACGCTCTCTCCC 829
| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 752 ACGCTATGAACATGACTATCAATGATGTTCTACTCGGAGTTACACAAGCCGCTCTCTCCC 811
Query 830 GCTATCTT-AACCAGCGATATGGCGACAAAAATGGTGAGGGTGTAACAACGACATCGAAT 888
||||| || ||||||||||||||||||||| ||||||||| || ||||||||||||| ||
Sbjct 812 GCTAT-TTGAACCAGCGATATGGCGACAAAGATGGTGAGGATGGAACAACGACATCGGAT 870
Query 889 CTAAACAATCTTCCAGGTAAAATACGAATTCGAGCAGGTGTTGCGGTAAATCTAAGGCAG 948
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 871 CTAAACAATCTTCCAGGTGAAATACGAATTCGAGCAGGTGTTGCGGTTAATCTAAGGCAG 930
Query 949 GATATTGGAATTCAGCCTTTGGAGGACATGTTGGCCAAGGATTCGAAATGTAGATGGGGA 1008
||||||||||| |||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 931 GATATTGGAATCCAGCCTGTGGAGGATATGTTGGCCAAGGGTTCGAAATGTAGATGGGGA 990
Query 1009 AATTATGATTCCTTAGTTTTTGTTCCATTCTCCATAAGTTTGGAAACCGATCCATTGGTT 1068
|||||||| ||||||||||||||||| ||||||| ||||| |||| |||||||||||||
Sbjct 991 AATTATGACTCCTTAGTTTTTGTTCCGCTCTCCATCAGTTTAGAAATCGATCCATTGGTT 1050
Query 1069 CCTTTATTAAAAGCTAAATCAATAATGGATCGAAAGAAGCACTCTC-TTGTCGCCCCTAT 1127
||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||
Sbjct 1051 CCTCTATTAAAAGCTAAATCAATAATGGATCGAAAGAAGCATTCTCATTG-CGCCGCTAT 1109
Query 1128 GCATTATTCAATCATCGAGTTTATCATCAATACTTTCGGAACTAAGGTATTCAACCGAAC 1187
|||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1110 GCATTATTCAGTCCTCGAGTTTATCATCAATACTTTCGGACCTAAGGTATTCAAACGAAC 1169
Query 1188 ATGTTCGAACACAACAACAATCTTATCAAACATTGTTGGCCCCGTGGAAGAAGTTAGTTT 1247
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1170 ATGTTCGAATACAACAACAATCTTATCAAACATCGTTGGCCCTGTGGAAGAAGTTAGTTT 1229
Query 1248 ACACGGCAATTGTATCACTTACATTGCTCTAACCGGCTATGGACACTCGCAAGCACTGAT 1307
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 1230 ACACGGAAATTGTATCACTTACATCGCTCTAAGTGGCTATGGACACTCGCAAGCCCTGAT 1289
Query 1308 GATACATTTCATAAGTTACGCGAACAAGATGATAATTACGATAGCCGTCGATCCTGCGGT 1367
|||||||||||||||||||| ||| || ||| ||||||||||||| ||||||||||||||
Sbjct 1290 GATACATTTCATAAGTTACGGGAAGAAAATGGTAATTACGATAGCGGTCGATCCTGCGGT 1349
Query 1368 CATACCAGATCCTCACAATATTTGTGATGAAATGGAAAAGTCTTTGAAAG 1417
|||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1350 CATACCAGATCCTCACAATATTTGCGATGAAATGGAGAAGTCTTTGAAAG 1399
> Ahg947791 jgi|Araly1|947791|scaffold_704020.1
Length=1446
Score = 270 bits (146), Expect = 2e-71
Identities = 624/839 (74%), Gaps = 95/839 (11%)
Strand=Plus/Plus
Query 34 AGCCCGATGGCTCGGT-TATTCCAGTCACCGGGGATAGAA-AATTGCATTATCACGATGA 91
||||| ||||||| || | ||||| || ||||| | | || |||||| ||||| ||||
Sbjct 56 AGCCCTATGGCTC-GTGTGTTCCAATCGCCGGGCA-ACAACTGTTGCATCATCACCATGA 113
Query 92 TTGGTTTCAAAGCCAAGATTAATCCTGACATCATTCTA-GATGACTTGAAGCATAACGTT 150
| |||| |||| ||||||| ||| |||| |||||||| | || |||||||| ||| |||
Sbjct 114 TCGGTTGCAAAACCAAGATCAATGCTGATGTCATTCTACG-TGCCTTGAAGCTTAATGTT 172
Query 151 TCCAAGCATCCTCGTTTCTGTAGTAAATTGGTAATTGCCACACATACAAATTATGATGGT 210
||||||||||||||||||| ||| | ||||| | | | ||||||||
Sbjct 173 TCCAAGCATCCTCGTTTCTCTAG--CA-----AATTG-------T-C---TGATGATGGT 214
Query 211 GAGA-GATGGATGAAGAC-CAAAGTCAATGTAGAAGACCATGTATTTGTACCAGACATAG 268
| | | ||||| ||||| | |||||||||||||| ||||||||||||||||||| ||||
Sbjct 215 G-CATGTTGGATTAAGACTC-AAGTCAATGTAGAAAACCATGTATTTGTACCAGATATAG 272
Query 269 ACCTACAA-GAGATTAACA-AAGATGGAGATGGCTT-CGTCGATGACTATGTCTCGCGTC 325
||| | || ||| | | |||||||||| || || || || |||||||| || ||||
Sbjct 273 ACC-AGAACAAGA-TCGGAGAAGATGGAGAAGG-TTATGTTGAAGACTATGTTTCACGTC 329
Query 326 TAAC-ATTGAGTCCTCTCGATAAATCGAA-ACCATTGTGGGATATTCATATCCTCAATGT 383
| || | || ||||||||||||||| || ||| |||||||| || || |||||||| |
Sbjct 330 TTACGA-TGCTTCCTCTCGATAAATC-AAGACCTTTGTGGGACATGCACATCCTCAACAT 387
Query 384 CAAAAC-ATCTGATGCAGAAGCGGTCGGTGTAATGAGATGTCATCATTCTTTGGCAGATG 442
|||||| || |||||| |||||||| ||||||| |||| ||| ||||| |||| |||||
Sbjct 388 CAAAACGAT-TGATGCCGAAGCGGTTTGTGTAATAAGATCTCACCATTCATTGGGAGATG 446
Query 443 GAATGTCCT-TGATGTCAC-TCTTGGTGGCATGTAC-CCGAAAAACATCAAATCTTGAGT 499
||| | || | ||||| | || | | || ||||| | | ||||||||| | | |||
Sbjct 447 GAACAT-CTCTCATGTCTCTTC-TAATAGCTTGTACTCAG-AAAACATCACA-C-CGAGA 501
Query 500 C--ATTTCCTACCATTCCTGCCA-TAAAACGGCGTGAACAAATGATGTCGCATCGCTTTG 556
| ||||||||| | || || | | |||| |||| | ||| | | | | | |
Sbjct 502 CATATTTCCTACTAGTCATG-TACTTAAACAGCGT--A-AAA-G--G--G-A--G-GAT- 547
Query 557 GAA-ACAAAG--GC-TGG-TATTCAAGATCGATAAACGCAGTTTATTAT-G-CCGTGAGA 609
|| | |||| | ||| | || ||||| | || || |||| || | | ||||||
Sbjct 548 AAAGATAAAGTCCCATGGTTCTT-AAGATGGGTACTTGCGGTTT-TT-TCGTTAGTGAGA 604
Query 610 TTAATTTGGAATACAATT-GTGGAT-CTTCTACTGCT-TTGGGCGACTAGTCttt-tt-t 664
|| ||||| ||||| || |||||| || | || || ||||| ||| | |||| || |
Sbjct 605 TTGATTTGCAATAC-TTTCGTGGATAGTT-TGCTTCTCTTGGG-GAC-A-ACTTTGTTCT 659
Query 665 ttAAGGATACAGAGACGCCTATTAGCGAGGGT-AT-TGGAT-CCGGGAATAATGCA-AGG 720
| ||||||||| |||||||| | | | ||| || ||| | | ||||||| || | |
Sbjct 660 TGAAGGATACAAAGACGCCT-CT-G-AAAGGTGATGTGGGTGTAGAGAATAAT-CAGAAG 715
Query 721 AGATTTTATCACCGAACCGTCTCATTGGATGATATTAAACTGATAAA-AAATGCTATGAA 779
||||||| |||||| | || || || ||||| || ||||| ||||| || | ||||||
Sbjct 716 AGATTTTGTCACCGGATTGTTTCGTTAGATGACATAAAACTTATAAAGGAA-GTTATGAA 774
Query 780 GATGACTATCAATGATGTTCTACTTGGAGTTACACAAGACGCTCTCTCCCGCTATCTTA 838
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 775 CATGACTATCAATGATGTTCTACTTGGAGTTACACAAGCCGCTCTCTCGCGCTATCTTA 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5