BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53380.1 Length=1452 Score E Sequences producing significant alignments: (Bits) Value Ahg495410 jgi|Araly1|495410|fgenesh2_kg.8__1226__AT5G53380.1 1781 0.0 Ahg947791 jgi|Araly1|947791|scaffold_704020.1 270 2e-71 > Ahg495410 jgi|Araly1|495410|fgenesh2_kg.8__1226__AT5G53380.1 Length=1446 Score = 1781 bits (964), Expect = 0.0 Identities = 1282/1430 (90%), Gaps = 44/1430 (3%) Strand=Plus/Plus Query 1 ATGACGAAGGAAG-AAGTAGAGGAGGAGCCTCTAAGCCCGATGGCTCGGTTATTCCAGTC 59 |||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||| || Sbjct 1 ATGACGAAGG-AGAAAGTAGAGGAGGAGCCTCTCAGCCCGATGGCTCGGCTATTCCAATC 59 Query 60 ACCGGGGATAGAAAATTGCATTATCACGATGATTGGTTTCAAAGCCAAGATTAATCCTGA 119 ||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||| ||| Sbjct 60 GCCGGGGATAGACAATTGCATTGTCACGATGATCGGTTTCAAGGCCAAGATTAATCGTGA 119 Query 120 CATCATTCTAGATGACTTGAAGCATAACGTTTCCAAGCATCCTCGTTTCTGTAGTAAATT 179 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | Sbjct 120 CATCATTCTAGATGAATTGAAGCAAAACGTTTCCAAGCATCCTCGTTTCTGTAGT--A-- 175 Query 180 GGTAATTGCCACACATACAAATTATGATGGTG-AGAGATGGATGAAGACCAAAGTCAATG 238 || || | | | ||||||||| | ||||||||||| | |||||||||| Sbjct 176 ---AACTG-------T-C--A-GATGATGGTGCA-AGATGGATGAAAATAAAAGTCAATG 220 Query 239 TAGAAGACCATGTATTTGTACCAGACATAGACCTACAAGAGATTAACAAAGATGGAGATG 298 |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| Sbjct 221 TAGAAGACCATGTATTTGCACCAGACATAGACCCACAAGAGATCAACAAAGATGGAGATA 280 Query 299 GCTTCGTCGATGACTATGTCTCGCGTCTAAC-ATTGAGTCCTCTCGATAAATCGAAACCA 357 | ||||| |||||||||||||| |||||||| || | ||||||||||||||| |||||| Sbjct 281 GTTTCGTGGATGACTATGTCTCTCGTCTAACGCTT-ATTCCTCTCGATAAATCAAAACCA 339 Query 358 TTGTGGGATATTCATATCCTCAATGTCAAAACATCTGATGCAGAAGCGGTCGGTGTAATG 417 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 340 TTGTGGGATATTCACATCCTCAATGTCAAAACATCTGATGCAGAAGCGGTTGGTGTAATG 399 Query 418 AGATGTCATCATTCTTTGGCAGATGGAATGTCCTTGATGTCACTCTTGGTGGCATGTACC 477 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||| Sbjct 400 AGATGTCATCATTCTTTGGCAGATGGAATGTCCTTGATGTCTCTCTCGGTGGCGTTTACC 459 Query 478 CGAAAAACATCAAATCTTGAGTCATTTCCTACCATTCCTGCCATAAAACGGCGTGAACAA 537 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 460 CGAAAAACATCAGATCTTGAGGCATTTCCTACCATTCCTGCCATAAAACGGCGTGAACAA 519 Query 538 ATGATGTCGCATCG-CTTTGGAAACAAAGGCTGG-TATTCAAGATCGATAAACGCAGTTT 595 || ||||| || || ||| ||||||||||| ||| | || ||||| |||| |||| ||| Sbjct 520 ATTATGTCACAACGTCTT-GGAAACAAAGGATGGCTTTT-AAGATGGATATTCGCAATTT 577 Query 596 A-TTATGCCGTGAGATTAATTTGGAATACAATTGTGGATCTTCTACTGCT-TTGGGCGAC 653 | || ||| || ||||| ||||||||||| ||||| ||||||||| |||| |||| |||| Sbjct 578 ACTT-TGCGGTTAGATTGATTTGGAATACCATTGTAGATCTTCTATTGCTCTTGG-CGAC 635 Query 654 TAGTCtttttttt-AAGGATACAGAGACGCCTATTAGCGAGGGT---ATTGGATCCGGGA 709 || | | ||| | |||||||||||||||||| ||| ||||||| | || || |||| Sbjct 636 TA-TAATGTTTCTGAAGGATACAGAGACGCCTCTTAACGAGGGTGCCAGTG--TC-GGGA 691 Query 710 ATAATGCAAGGAGATTTTATCACCGAACCGTCTCATTGGATGATATTAAACTGATAAAAA 769 |||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||| | Sbjct 692 ATAATGCAAGAAGATTTTATCACCGAACTATCTCATTGGATGATATTAAGCTTATAAAGA 751 Query 770 ATGCTATGAAGATGACTATCAATGATGTTCTACTTGGAGTTACACAAGACGCTCTCTCCC 829 | |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 752 ACGCTATGAACATGACTATCAATGATGTTCTACTCGGAGTTACACAAGCCGCTCTCTCCC 811 Query 830 GCTATCTT-AACCAGCGATATGGCGACAAAAATGGTGAGGGTGTAACAACGACATCGAAT 888 ||||| || ||||||||||||||||||||| ||||||||| || ||||||||||||| || Sbjct 812 GCTAT-TTGAACCAGCGATATGGCGACAAAGATGGTGAGGATGGAACAACGACATCGGAT 870 Query 889 CTAAACAATCTTCCAGGTAAAATACGAATTCGAGCAGGTGTTGCGGTAAATCTAAGGCAG 948 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 871 CTAAACAATCTTCCAGGTGAAATACGAATTCGAGCAGGTGTTGCGGTTAATCTAAGGCAG 930 Query 949 GATATTGGAATTCAGCCTTTGGAGGACATGTTGGCCAAGGATTCGAAATGTAGATGGGGA 1008 ||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||| Sbjct 931 GATATTGGAATCCAGCCTGTGGAGGATATGTTGGCCAAGGGTTCGAAATGTAGATGGGGA 990 Query 1009 AATTATGATTCCTTAGTTTTTGTTCCATTCTCCATAAGTTTGGAAACCGATCCATTGGTT 1068 |||||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||||| Sbjct 991 AATTATGACTCCTTAGTTTTTGTTCCGCTCTCCATCAGTTTAGAAATCGATCCATTGGTT 1050 Query 1069 CCTTTATTAAAAGCTAAATCAATAATGGATCGAAAGAAGCACTCTC-TTGTCGCCCCTAT 1127 ||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||| Sbjct 1051 CCTCTATTAAAAGCTAAATCAATAATGGATCGAAAGAAGCATTCTCATTG-CGCCGCTAT 1109 Query 1128 GCATTATTCAATCATCGAGTTTATCATCAATACTTTCGGAACTAAGGTATTCAACCGAAC 1187 |||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1110 GCATTATTCAGTCCTCGAGTTTATCATCAATACTTTCGGACCTAAGGTATTCAAACGAAC 1169 Query 1188 ATGTTCGAACACAACAACAATCTTATCAAACATTGTTGGCCCCGTGGAAGAAGTTAGTTT 1247 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1170 ATGTTCGAATACAACAACAATCTTATCAAACATCGTTGGCCCTGTGGAAGAAGTTAGTTT 1229 Query 1248 ACACGGCAATTGTATCACTTACATTGCTCTAACCGGCTATGGACACTCGCAAGCACTGAT 1307 |||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||| Sbjct 1230 ACACGGAAATTGTATCACTTACATCGCTCTAAGTGGCTATGGACACTCGCAAGCCCTGAT 1289 Query 1308 GATACATTTCATAAGTTACGCGAACAAGATGATAATTACGATAGCCGTCGATCCTGCGGT 1367 |||||||||||||||||||| ||| || ||| ||||||||||||| |||||||||||||| Sbjct 1290 GATACATTTCATAAGTTACGGGAAGAAAATGGTAATTACGATAGCGGTCGATCCTGCGGT 1349 Query 1368 CATACCAGATCCTCACAATATTTGTGATGAAATGGAAAAGTCTTTGAAAG 1417 |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1350 CATACCAGATCCTCACAATATTTGCGATGAAATGGAGAAGTCTTTGAAAG 1399 > Ahg947791 jgi|Araly1|947791|scaffold_704020.1 Length=1446 Score = 270 bits (146), Expect = 2e-71 Identities = 624/839 (74%), Gaps = 95/839 (11%) Strand=Plus/Plus Query 34 AGCCCGATGGCTCGGT-TATTCCAGTCACCGGGGATAGAA-AATTGCATTATCACGATGA 91 ||||| ||||||| || | ||||| || ||||| | | || |||||| ||||| |||| Sbjct 56 AGCCCTATGGCTC-GTGTGTTCCAATCGCCGGGCA-ACAACTGTTGCATCATCACCATGA 113 Query 92 TTGGTTTCAAAGCCAAGATTAATCCTGACATCATTCTA-GATGACTTGAAGCATAACGTT 150 | |||| |||| ||||||| ||| |||| |||||||| | || |||||||| ||| ||| Sbjct 114 TCGGTTGCAAAACCAAGATCAATGCTGATGTCATTCTACG-TGCCTTGAAGCTTAATGTT 172 Query 151 TCCAAGCATCCTCGTTTCTGTAGTAAATTGGTAATTGCCACACATACAAATTATGATGGT 210 ||||||||||||||||||| ||| | ||||| | | | |||||||| Sbjct 173 TCCAAGCATCCTCGTTTCTCTAG--CA-----AATTG-------T-C---TGATGATGGT 214 Query 211 GAGA-GATGGATGAAGAC-CAAAGTCAATGTAGAAGACCATGTATTTGTACCAGACATAG 268 | | | ||||| ||||| | |||||||||||||| ||||||||||||||||||| |||| Sbjct 215 G-CATGTTGGATTAAGACTC-AAGTCAATGTAGAAAACCATGTATTTGTACCAGATATAG 272 Query 269 ACCTACAA-GAGATTAACA-AAGATGGAGATGGCTT-CGTCGATGACTATGTCTCGCGTC 325 ||| | || ||| | | |||||||||| || || || || |||||||| || |||| Sbjct 273 ACC-AGAACAAGA-TCGGAGAAGATGGAGAAGG-TTATGTTGAAGACTATGTTTCACGTC 329 Query 326 TAAC-ATTGAGTCCTCTCGATAAATCGAA-ACCATTGTGGGATATTCATATCCTCAATGT 383 | || | || ||||||||||||||| || ||| |||||||| || || |||||||| | Sbjct 330 TTACGA-TGCTTCCTCTCGATAAATC-AAGACCTTTGTGGGACATGCACATCCTCAACAT 387 Query 384 CAAAAC-ATCTGATGCAGAAGCGGTCGGTGTAATGAGATGTCATCATTCTTTGGCAGATG 442 |||||| || |||||| |||||||| ||||||| |||| ||| ||||| |||| ||||| Sbjct 388 CAAAACGAT-TGATGCCGAAGCGGTTTGTGTAATAAGATCTCACCATTCATTGGGAGATG 446 Query 443 GAATGTCCT-TGATGTCAC-TCTTGGTGGCATGTAC-CCGAAAAACATCAAATCTTGAGT 499 ||| | || | ||||| | || | | || ||||| | | ||||||||| | | ||| Sbjct 447 GAACAT-CTCTCATGTCTCTTC-TAATAGCTTGTACTCAG-AAAACATCACA-C-CGAGA 501 Query 500 C--ATTTCCTACCATTCCTGCCA-TAAAACGGCGTGAACAAATGATGTCGCATCGCTTTG 556 | ||||||||| | || || | | |||| |||| | ||| | | | | | | Sbjct 502 CATATTTCCTACTAGTCATG-TACTTAAACAGCGT--A-AAA-G--G--G-A--G-GAT- 547 Query 557 GAA-ACAAAG--GC-TGG-TATTCAAGATCGATAAACGCAGTTTATTAT-G-CCGTGAGA 609 || | |||| | ||| | || ||||| | || || |||| || | | |||||| Sbjct 548 AAAGATAAAGTCCCATGGTTCTT-AAGATGGGTACTTGCGGTTT-TT-TCGTTAGTGAGA 604 Query 610 TTAATTTGGAATACAATT-GTGGAT-CTTCTACTGCT-TTGGGCGACTAGTCttt-tt-t 664 || ||||| ||||| || |||||| || | || || ||||| ||| | |||| || | Sbjct 605 TTGATTTGCAATAC-TTTCGTGGATAGTT-TGCTTCTCTTGGG-GAC-A-ACTTTGTTCT 659 Query 665 ttAAGGATACAGAGACGCCTATTAGCGAGGGT-AT-TGGAT-CCGGGAATAATGCA-AGG 720 | ||||||||| |||||||| | | | ||| || ||| | | ||||||| || | | Sbjct 660 TGAAGGATACAAAGACGCCT-CT-G-AAAGGTGATGTGGGTGTAGAGAATAAT-CAGAAG 715 Query 721 AGATTTTATCACCGAACCGTCTCATTGGATGATATTAAACTGATAAA-AAATGCTATGAA 779 ||||||| |||||| | || || || ||||| || ||||| ||||| || | |||||| Sbjct 716 AGATTTTGTCACCGGATTGTTTCGTTAGATGACATAAAACTTATAAAGGAA-GTTATGAA 774 Query 780 GATGACTATCAATGATGTTCTACTTGGAGTTACACAAGACGCTCTCTCCCGCTATCTTA 838 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 775 CATGACTATCAATGATGTTCTACTTGGAGTTACACAAGCCGCTCTCTCGCGCTATCTTA 833 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54316689370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5