BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53390.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949931 jgi|Araly1|949931|scaffold_801818.1 2338 0.0
Ahg952442 jgi|Araly1|952442|scaffold_72600001.1 1469 0.0
> Ahg949931 jgi|Araly1|949931|scaffold_801818.1
Length=1507
Score = 2338 bits (1266), Expect = 0.0
Identities = 1428/1506 (95%), Gaps = 12/1506 (1%)
Strand=Plus/Plus
Query 38 CCACAAATAGGTCAAAGAATGGGTGAAGAC-AAGAAGACGGCAAGGGAGACGGTGGAGGA 96
|||| ||||| | ||||||||||||||| | ||||| | ||| |||||||||||||||||
Sbjct 3 CCACTAATAGTTTAAAGAATGGGTGAAG-CGAAGAACAAGGCGAGGGAGACGGTGGAGGA 61
Query 97 GGAACCACTTAGCCCATGTTCACGGCTGTTCAATTCGCCGGATTTTAACTGTGCAATAAT 156
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 62 GGAGCCACTCAGCCCATGTTCACGGCTGTTTAATTCGCCGGATTTTAACTGTGCGATAAT 121
Query 157 CGTTACAATGGGATCTAAAGTTAAAGGAGACACACCAGCCATCATCCACGGCCTTGAACA 216
||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 122 CGTGACAATGGGATCTAGAGTCAAAGGAGACACACCTGCCATCATCCACGGCCTTGAACA 181
Query 217 CACCCTCGTAAACCACCCTCGCTTCTCTAGCATTTTAGAGATGAACAATGG---G-AA-- 270
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 182 CACCCTCGTAAACCACCCTCGCTTTTCTAGCATTTTAGAGATGAACAATGGTAAGAAAGG 241
Query 271 GAAGCCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGATGT 330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 GAAACCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGACAT 301
Query 331 GGATCCCGACATTGAAAATCCGGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 390
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGATCCCGACATTGAAAATCCTGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 361
Query 391 CATTCCTATGGATTTGTCTAAACCATTATGGGAAATGCACTTACTAGGCGTCAAAACATC 450
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 362 CATTCCTATGGATTTGTCTAAGCCATTATGGGAAATGCACTTACTAGGCCTCAAAACATT 421
Query 451 GAACGCTGAATCCTATGCTATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 510
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAACGCTGAATCCTTTGCCATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 481
Query 511 CATGTCTCTTTTACTGGCTTGTACCCGCAAAACATCAGACCCCGAGGCTTTGCCTACCGT 570
|||||||||| | || ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 482 CATGTCTCTTCTCCTAGCTTGCACCCGCAAAACATCAGACCCCCAGGCTTTGCCTACCGT 541
Query 571 TGCGGTTCATAAAAAACGCTTTGGACCGAGCTGCAACAGCGGGTTTTTCAACAAGATTTG 630
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGCGGTTCAGAAAAAACGCTTTGGACCGAGCTGCAACAGCGGGTTTTTCAACAAGATTTG 601
Query 631 GTGGTTATTTGTAGGGCTCTGGTTCATCCTAAGATTGCTATTCAACACTTTTGTTGATAT 690
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 GTGGTTATTTGTAGGGCTCTGGTTCATCATAAGATTGCTATTCAACACTTTTGTTGATAT 661
Query 691 CTTAATGTTTGCTCTTACAATATTTGTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 750
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 662 CTTAATGTTTGCTCTTACAATATTTTTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 721
Query 751 ACCCGGTAGTGAACTTATC-CCTAAGAGGTTCGTCCACCGGATTATCAGTTTTGACGATG 809
||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||
Sbjct 722 ACCCGGTAGTGAACTTA-CACCTAAGAGGTTCATCCACCGGATTATCAGCTTTGACGATG 780
Query 810 TTAAGCTGGTGAAAAACGCAATGAAAATGACGGTGAACGATGTTCTTCTTGGAGTAACGC 869
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 781 TTAAGCTGGTGAAAAATGCAATGAAAATGACGGTAAACGATGTTCTCCTTGGAGTAACCC 840
Query 870 AAGCCGGACTTTCGCGTTACCTTAGTCGAAAATATGATCAAGAAGCAACACCGAAATCGA 929
||||||| ||||| || || |||||||||| ||||||||||||||||||||| ||||| |
Sbjct 841 AAGCCGGGCTTTCACGGTATCTTAGTCGAAGATATGATCAAGAAGCAACACCAAAATCAA 900
Query 930 AAGAGTCCATGAGGAGAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACG 989
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGAGTCGATGAGGAAAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACA 960
Query 990 CAGGAATTGAGGCTCTAGCGGATATGATGGCCAAGAAATCAAAATGCAGATGGGGAAATC 1049
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 CAGGAATTGAGGCTCTAGCGGATATGATGGCCAAGAAATCTAAATGCAGATGGGGAAATC 1020
Query 1050 TCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGACCGATCCTCTAGAATACG 1109
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 TCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGGCCGATCCTCTAGAATACG 1080
Query 1110 TGCGCCAAGCTAAAGCCACGATTGACCGCAAGAAACACTCTCTAGAAGCCGTATTCTCCA 1169
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 1081 TGCGCCAAGCTAAAGCCACGATCGACCGCAAGAAAAACTCTCTTGAAGCCGTATTCTCCA 1140
Query 1170 TGGCATTCTTTAAATTGATACTAAAAGTTCTTGGGCTCAAGGCAAGTGTAGTTCTTGTAA 1229
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGCATTCTTTAAATTGATATTAAAAGTTCTTGGGCTCAAGGCAAGTGTAGTTCTTGTAA 1200
Query 1230 GGAAAGTGATCCATAGCACAACGTT-ATCATTTTCAAATGTGGTCGGTCCAAAGGAAGAA 1288
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1201 GGAAAGTGATCCATAGCACAACGTTGA-CATTTTCAAATGTGGTCGGTCCAAAGGAAGAA 1259
Query 1289 ATTACATTCCATGGTCACCCACTGAATTATATCTCCCCATGTGTTTTTGGCCACCCACAT 1348
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1260 ATTACATTCCATGGTCACCCACTGAATTATATCTCCCCTTGTGTTTTTGGCCACCCACAT 1319
Query 1349 GCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTAACGGCTGAT 1408
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1320 GCTCTTACTCTACATTTCCAGAGCTATGCGAACAAGGTCATAATATCGGTAACGGCTGAT 1379
Query 1409 CCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATTTGGTGGAGTCTCTCAAGATG 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 CCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATTTGGTGGAGTCTCTGAAGATA 1439
Query 1469 ATTAAAGCCGCTGTTCTTGAAAGAGGGTTATATGAGATTGAGGTCTAACTAAAGCTCTTT 1528
|||||| ||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1440 ATTAAATCCGCTGTCCTAGAAAGAGGGTTATATGAGATTGACGTCTAGTTAAAGCTCTTT 1499
Query 1529 TGTTGT 1534
||||||
Sbjct 1500 TGTTGT 1505
> Ahg952442 jgi|Araly1|952442|scaffold_72600001.1
Length=1138
Score = 1469 bits (795), Expect = 0.0
Identities = 913/970 (94%), Gaps = 8/970 (1%)
Strand=Plus/Plus
Query 38 CCACAAATAGGTCAAAGAATGGGTGAAGAC-AAGAAGACGGCAAGGGAGACGGTGGAGGA 96
|||| ||||| | ||||||||||||||| | ||||| | ||| |||||||||||||||||
Sbjct 3 CCACTAATAGTTTAAAGAATGGGTGAAG-CGAAGAACAAGGCGAGGGAGACGGTGGAGGA 61
Query 97 GGAACCACTTAGCCCATGTTCACGGCTGTTCAATTCGCCGGATTTTAACTGTGCAATAAT 156
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 62 GGAGCCACTCAGCCCATGTTCACGGCTGTTTAATTCGCCGGATTTTAACTGTGCGATAAT 121
Query 157 CGTTACAATGGGATCTAAAGTTAAAGGAGACACACCAGCCATCATCCACGGCCTTGAACA 216
||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 122 CGTGACAATGGGATCTAGAGTCAAAGGAGACACACCTGCCATCATCCACGGCCTTGAACA 181
Query 217 CACCCTCGTAAACCACCCTCGCTTCTCTAGCATTTTAGAGATGAACAATGG---G-AA-- 270
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 182 CACCCTCGTAAACCACCCTCGCTTTTCTAGCATTTTAGAGATGAACAATGGTAAGAAAGG 241
Query 271 GAAGCCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGATGT 330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 GAAACCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGACAT 301
Query 331 GGATCCCGACATTGAAAATCCGGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 390
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGATCCCGACATTGAAAATCCTGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 361
Query 391 CATTCCTATGGATTTGTCTAAACCATTATGGGAAATGCACTTACTAGGCGTCAAAACATC 450
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 362 CATTCCTATGGATTTGTCTAAGCCATTATGGGAAATGCACTTACTAGGCCTCAAAACATC 421
Query 451 GAACGCTGAATCCTATGCTATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 510
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAACGCTGAATCCTTTGCCATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 481
Query 511 CATGTCTCTTTTACTGGCTTGTACCCGCAAAACATCAGACCCCGAGGCTTTGCCTACCGT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CATGTCTCTTTTACTGGCTTGTACCCGCAAAACATCAGACCCCGAGGCTTTGCCTACCGT 541
Query 571 TGCGGTTCATAAAAAACGCTTTGGACCGAGCTGCAACAGCGGGTTTTTCAACAAGATTTG 630
||| ||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 542 TGCCGTTCAGAAAAAACGCTTTGGACCAAATTGCAACAGCGGTTTTTTCAACAAGATTTG 601
Query 631 GTGGTTATTTGTAGGGCTCTGGTTCATCCTAAGATTGCTATTCAACACTTTTGTTGATAT 690
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 GTGGTTATTTGTAGGGCTCTGGTTCATCATAAGATTGCTATTCAACACTTTTGTTGATAT 661
Query 691 CTTAATGTTTGCTCTTACAATATTTGTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 750
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 662 CTTAATGTTTGCTCTTACAATATTTTTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 721
Query 751 ACCCGGTAGTGAACTTATCCCTAAGAGGTTCGTCCACCGGATTATCAGTTTTGACGATGT 810
||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct 722 ACCCGGTAGTGAACTTAACCCTAAGAGGTTCATCCACCGGATTATCAGCTTTGACGATGT 781
Query 811 TAAGCTGGTGAAAAACGCAATGAAAATGACGGTGAACGATGTTCTTCTTGGAGTAACGCA 870
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 782 TAAGCTGGTGAAAAATGCAATGAAAATGACGGTAAACGATGTTCTCCTTGGAGTAACCCA 841
Query 871 AGCCGGACTTTCGCGTTACCTTAGTCGAAAATATGATCAAGAAGCAACACCGAAATCGAA 930
|||||| ||||| || || |||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 842 AGCCGGGCTTTCACGGTATCTTAGTCGAAGATATGATCAAGAAGCAACACCAAAATCAAA 901
Query 931 AGAGTCCATGAGGAGAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACGC 990
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 AGAGTCGATGAGGAAAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACAC 961
Query 991 AGGAATTGAG 1000
||||||||||
Sbjct 962 AGGAATTGAG 971
Score = 281 bits (152), Expect = 1e-74
Identities = 165/171 (96%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 1037 AGATGGGGAAATCTCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGACCGAT 1096
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 970 AGATGGGG-AATCTCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGGCCGAT 1028
Query 1097 CCTCTAGAATACGTGCGCCAAGCTAAAGCCACGATTGACCGCAAGAAACACTCTCTAGAA 1156
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1029 CCTCTAGAATACGTGCGCCAAGCTAAAGCCACGATCGACCGCAAGAAA-ACTCTCTTGAA 1087
Query 1157 GCCGTATTCTCCATGGCATTCTTTAAATTGATACTAAAAGTTCTTGGGCTC 1207
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1088 GCCGTATTCTCCATGGCATTCTTTAAATTGATATTAAAAGTTCTTGGGCTC 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5