BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53400.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495412 jgi|Araly1|495412|fgenesh2_kg.8__1228__AT5G53400.1 1295 0.0
Ahg491996 jgi|Araly1|491996|fgenesh2_kg.7__1429__AT4G27890.1 462 2e-129
Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1 84.2 2e-15
> Ahg495412 jgi|Araly1|495412|fgenesh2_kg.8__1228__AT5G53400.1
Length=1005
Score = 1295 bits (701), Expect = 0.0
Identities = 925/1024 (90%), Gaps = 51/1024 (5%)
Strand=Plus/Plus
Query 67 AAACATCCCATTTCTTGATTTCCCT-C----TTTGTCGCAAACCCAACAAAGTAGAGCAA 121
||||||||||||||||||||||||| | |||||| |||||||||||||||||| |||
Sbjct 1 AAACATCCCATTTCTTGATTTCCCTCCGTTGTTTGTCACAAACCCAACAAAGTAGACCAA 60
Query 122 AACCCTAAAACGGAAACCTTCCATGGCGATTATCTCTGAGGTAGAAGAAGAAAGCAGTAG 181
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 AACCCTAAAAC-GAAACCTCCCATGGCGATTATCTCTGAGGTAGAAGAAGAAAGCAGCAG 119
Query 182 CAGCCGACCCATGATATTTCCCTTTAGGGCAACACTCAG-TTCTGCAAACCCATTAGGGT 240
||||||||||| ||| || || ||||||||| |||| | |||| |||||||||||||||
Sbjct 120 CAGCCGACCCAGGATGTTGCCGTTTAGGGCAGTACTC-GATTCTTCAAACCCATTAGGGT 178
Query 241 TTTTGGAGAAAGTTTTCGACTTTCTCGGAGAACAGAGCGATTTTCTCAAGAAACCCTCCG 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 TTTTGGAGAAAGTTTTCGACTTTCTTGGAGAACAGAGCGATTTTCTCAAGAAACCCTCCG 238
Query 301 CGGAGGACGAGATCGTCGTCGCGGTTAGGGCGGCGAAGgagaagttgaaaaaggctgaga 360
||||| | ||||||| |||||||||||||||||||||||||||| | | ||
Sbjct 239 CGGAGCAGGAGATCGCCGTCGCGGTTAGGGCGGCGAAGGAGAAG-T---------T--GA 286
Query 361 agaagaaagctgagaaggagagtgtgaagcctgtggagaagaaagccgagaaggaaATTG 420
|||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| | ||
Sbjct 287 AGAAGAAAGCTGAGAAAGAGATTGTTAAGCCTGTGGAGAAGAAAGCTGAGAAGGAGACTG 346
Query 421 TTAAG-CT-T----------GT-G-G-A-GA-A--G--AAG---GTAGAGAAGGAGAGTG 456
||||| || | || | | | || | | ||| || |||||||||||||
Sbjct 347 TTAAGCCTGTGGAGAGGAAGGTAGAGAAGGAGAGTGTTAAGCCTGTGGAGAAGGAGAGTG 406
Query 457 TCAAGCCAACTATAGCTGCTTCAAGTGCTGAGCCTATAGAAGTGGAGAAGCCTAAGGAGG 516
||||||| ||| | ||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 407 TCAAGCCGACTGTGGCTACTTCAAGTGCTGAGCCTATGGAAGTGGAGAAGCCTAAGGA-G 465
Query 517 AAGAGGAGAAGAAGGAATCTGGTCCCATTGTTCCTAACAAAGGTAATGGAACTGATCTTG 576
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 466 --GAGGAGAAGAAGGAATCTGGTCCCATTGTTCCTAACCAAGGTAATGGAACTGATCTTG 523
Query 577 AGAACTACTCATGGATCCAGAATCTCCAGGAGGTTACAGTTAACATTCCAGTGCCTACTG 636
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 524 AGAACTACTCATGGGTCCAGAATCTCCAGGAGGTCACAGTTAACATTCCAGTGCCTATTG 583
Query 637 GGACTAAAGCACGGACTGTTGTATGTGAGATTAAGAAAAACCGTCTCAAGGTTGGTCTCA 696
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 584 GGACTAAAGCACGGTCTGTTGTATGTGAGATTAAGAAGAACCGTCTCAAGGTTGGTCTCA 643
Query 697 AAGGCCAGGATCCAATCGTCGATGGGGAGCTCTACCGATCTGTGAAGCCTGATGACTGCT 756
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 644 AAGGCCAGGATCCAATCATCGATGGAGAGCTCTATCGATCTGTGAAGCCTGATGACTGCT 703
Query 757 ACTGGAATATCGAGGATCAAAAGGTGATTTCGATTCTCTTGACTAAGTC-TGATCAGATG 815
||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||
Sbjct 704 ACTGGAATATCGAGGATCAAAAGATGATTTCGATTCTGTTGACTAAG-CATGATCAGATG 762
Query 816 GAGTGGTGGAAATGCTGTGTGAAAGGTGAACCTGAAATCGATACTCAGAAAGTTGAACCA 875
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 763 GAGTGGTGGAAATGCTGTGTGAAAGGCGAACCTGAAATCGATACTCAGAAAGTTGAACCA 822
Query 876 GAGACTAGTAAATTAGGTGACCTTGATCCAGAAACTCGCTC-GACTGTTGAGAAAATGAT 934
||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 823 GAGACCAGTAAATTAGGTGACCTTGACCCAGAAACTCGC-CAGACTGTTGAGAAAATGAT 881
Query 935 GTTTGATCAAAGGCAAAAGCAGATGGGTCTTCCAACAAGCGAGGAGCTACAGAAGCAAGA 994
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 882 GTTCGATCAAAGGCAAAAGCAAATGGGTCTTCCAACAAGCGACGAGCTACAGAAGCAAGA 941
Query 995 GATCCTTAAGAAATTCATGTCTGAGCATCCGGAGATGGACTTCTCAAATGCAAAGTTTAA 1054
||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 942 GATTCTCAAGAAATTCATGTCTGAGCATCCAGAGATGGACTTCTCAAACGCAAAGTTTAA 1001
Query 1055 CTGA 1058
||||
Sbjct 1002 CTGA 1005
> Ahg491996 jgi|Araly1|491996|fgenesh2_kg.7__1429__AT4G27890.1
Length=1007
Score = 462 bits (250), Expect = 2e-129
Identities = 454/551 (82%), Gaps = 20/551 (4%)
Strand=Plus/Plus
Query 520 AGGA-GAAGAAGGAATCTGGTCCCATTGTTCCTAACAAAGGTAATGGAAC-TGATCTTGA 577
|||| ||| || |||||||||||||| |||||||||||||| ||||| | |||| ||||
Sbjct 341 AGGAGGAA-AAAGAATCTGGTCCCATCGTTCCTAACAAAGGCAATGG-GCTTGATTTTGA 398
Query 578 GAACTACTCATGGATCCAGAATCTCCAGGAGGTTACAGTTAACATTCCAGTGCCTA-CTG 636
||| ||||||||| |||||||| || ||||| ||| |||||||||||||||| | |
Sbjct 399 GAAATACTCATGGGGACAGAATCTTCAAGAGGTCACAATTAACATTCCAGTGCC-AGAAG 457
Query 637 GGACTAAAGCACGGA-CTGTTGTATGTGAGATTAAGAAAAACCGTCTCAAGGTTGGTCTC 695
| |||||| || || ||||| ||||| || ||||| |||||||| || |||||||||
Sbjct 458 GCACTAAATCA-AGATCTGTTACCTGTGAAATCAAGAAGAACCGTCTGAAAGTTGGTCTC 516
Query 696 AAAGGCCAGGATCCAATCGTCGATGGGGAGCTCTAC-CGATCTGTGAAGCCTGATGACTG 754
||||| || |||| |||| ||||||| || ||| | | ||||| |||||||| |||||
Sbjct 517 AAAGGGCAAGATCTAATCATCGATGGAGAATTCTTCAC-TTCTGTCAAGCCTGACGACTG 575
Query 755 CTACTGGAATATCGAGGATCAAAAGGTGATTTCGA-TTCTCTTGACTAAGTC-TGATCAG 812
|| |||||||||||||||||||||| |||| || | | |||||||| ||| | || |||
Sbjct 576 CTTCTGGAATATCGAGGATCAAAAGATGATATC-AGTGCTCTTGACAAAG-CAAGACCAG 633
Query 813 ATGGAGTGGTGGAAATGCTGTGTGAAAGGTGAACCTGAAATCGATACTCAGAAAGTTGAA 872
|||||||||||||||| |||||||| || ||||||||||| || |||||||||||||||
Sbjct 634 ATGGAGTGGTGGAAATATTGTGTGAAGGGAGAACCTGAAATAGACACTCAGAAAGTTGAA 693
Query 873 CCAGAGA-CTAGTAAATTAGGTGACCTTGATCCAGAAACTCGCTCGA-CTGTTGAGAAAA 930
||||||| | || ||||| ||||| || || || ||||||||| | | | |||||||| |
Sbjct 694 CCAGAGAGC-AGCAAATTGGGTGATCTCGACCCTGAAACTCGCGC-ATCCGTTGAGAAGA 751
Query 931 TGATGTTTGATCAAAGGCAAAAGCAGATGGGTCTTCCAACAAGCGAGGAGCTACAGAAGC 990
||||||||||||||||||||||||||||||| || |||||||| || ||| || |||||
Sbjct 752 TGATGTTTGATCAAAGGCAAAAGCAGATGGGACTCCCAACAAGTGATGAGATAGAGAAGA 811
Query 991 AAGAGATCCTTAAGAAATTCATGTCTGAGCATCC-GGAGATGGACTTCTCAAATGCAAAG 1049
|||| || || ||||| |||||| || || |||| || |||||||||||| || |||| |
Sbjct 812 AAGATATGCTCAAGAAGTTCATGGCTCAGAATCCTGG-GATGGACTTCTCTAACGCAATG 870
Query 1050 TTTAACTGATG 1060
||||| |||||
Sbjct 871 TTTAAATGATG 881
> Ahg481626 jgi|Araly1|481626|fgenesh2_kg.4__686__AT2G27280.1
Length=1263
Score = 84.2 bits (45), Expect = 2e-15
Identities = 117/151 (77%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 221 TTCTGCAAACCCATTAGGGTTTTTGGAGAAAGTT-TTCGACTTTCTCGGAGAAC-AGAGC 278
|||| |||||||||||||||||||||||||||| || |||||| | || ||| |||||
Sbjct 27 TTCTTCAAACCCATTAGGGTTTTTGGAGAAAGTCCTT-GACTTTATTGG-GAAAGAGAGC 84
Query 279 GATTTTCTCAAGAAACCCTCCGCGGAGGACGAGATCGTCG-TCGCGGTTAGGGCGGCGAA 337
| ||||| | |||| | | || ||| | |||||| || | || |||| ||| | |||
Sbjct 85 AACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGAT-GCTGTTACGGCCGTGAA 143
Query 338 Ggagaagttgaaa-aaggctgagaagaagaa 367
||||| ||||| ||| | |||||||||||
Sbjct 144 GGAGAGGTTGAGGGAAG-CAGAGAAGAAGAA 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5