BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53420.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495414 jgi|Araly1|495414|fgenesh2_kg.8__1230__AT5G53420.1 1736 0.0
Ahg945248 jgi|Araly1|945248|scaffold_701477.1 254 1e-66
> Ahg495414 jgi|Araly1|495414|fgenesh2_kg.8__1230__AT5G53420.1
Length=1158
Score = 1736 bits (940), Expect = 0.0
Identities = 1114/1190 (94%), Gaps = 43/1190 (4%)
Strand=Plus/Plus
Query 1 AAGGCAAGAGGAGAGCCAAGTACCAAACTTTTTCCTTCAGGGTTTTCCTCTCAAAATCCC 60
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1 AAGGCAAGAGGAGAGCTAAGTACCAAACTTTTTCCCTCAGGGTTTTCCTCTCAAATTCAC 60
Query 61 AACTTGGCCTCTGTTTTT-GCTTT--C--T-TTTATGTTCTCTTCTTCTCTAAAAAC-CA 113
|||||||||||||||||| | ||| | | |||||||||||||||||||||||||| ||
Sbjct 61 AACTTGGCCTCTGTTTTTCGTTTTGGCTTTCTTTATGTTCTCTTCTTCTCTAAAAACTCA 120
Query 114 TCTCATACTTCCAAGAATTTCTCTCACAAAGACCAAGAACTCAAAATGTATCAAGATTCT 173
| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TTTCCTACTTCCAAGAATTTCTCTCACAAAGACCAAGAACTTGAAATGTATCAAGATTCT 180
Query 174 GGATTAATGCTCCGTTACATGCAAAACTGTCCCCCAGATATTCAACAATTCGAAGACCTC 233
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGATTAATGATCCGTTACATGCAAAACTGTTCCCCAGATATTCAACAATTCGAAGACCTC 240
Query 234 TTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATA 300
Query 294 TCTGAGTATGATATTGGAGAAGAAAGTGATCTTTTTAGAGCTCCTGATCCAATTCTTGAA 353
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 301 TCTGAGTATGATATTGGAGTAGAAGGTGATCTTTTTAAAGCTCCTGATCCAATTCTTGAA 360
Query 354 GAACCAATCTTAACC-GTTGATCCACTCTCTGCTGCTTTGACTATGATCTCTTGTGGTGA 412
|||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GAACAAATCTTA-CCTGTTGATCCACTCTCTGCTGTTTTGACTATGATCTCTTGTGGTGA 419
Query 413 AGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACA 479
Query 473 GCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTTATGATGAAATCAGCTATGGA 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTCATGATGAAATCAGCTATGGA 539
Query 533 GTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGA 599
Query 593 GAACCAGGATATGCAAAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACA 652
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACCAAGATATGCAGAAGAGCGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACA 659
Query 653 TGCACAACAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGAAT 712
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 TGCACAGCAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGGAT 719
Query 713 GCGAAGAGCCTTTAGTGAAGGCGACATACAGAAACTTGGGGCAGGTCTTGTTCAATCTCC 772
||||||||||||||||||||||||||||||| | |||||| || |||||
Sbjct 720 GCGAAGAGCCTTTAGTGAAGGCGACATACAG------G-------TCTTGTCCA-TCTCC 765
Query 773 ACTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATA 832
| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 766 A-TGGATAGGATTATTGTGAGCTGTACTTCAGAGGATCGCCGTGAGAAGCTTTCTCGATA 824
Query 833 CAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGC 892
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 825 CAAGAACAAGAAGAGCAGACGAAATTTCGGGCGTAAAATCAAGTATGCTTGCAGGAAAGC 884
Query 893 TCTTGCAGATAGCCAACCGAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATA 952
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCTTGCAGATAGCCAACCTAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATA 944
Query 953 GAATGGTTCAAGAAAAGGGCTCAAAGGAAGGAGACTAAGCAAAAGGAAGAAACATGAAGA 1012
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | | ||
Sbjct 945 GAATGGTTCAAAAAAAGGGCTCAAAGGGAGGAGACTAAGCAAAAGGAAGAAAC-T-A-GA 1001
Query 1013 ATAAGGAGATAAAGCCCATCTCATTAGAAACTAGTTTTGTTTTATATATCTATGTATAAA 1072
| | | | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1002 A---G-A-A-----CCCATCTCATTAGAAACTAGTTTTGTTTTATA-ATCTATGTATAAA 1050
Query 1073 -CTTTAAAATCTTATAAGCATCCAATTAGTTTTTTGTATATAAAGGGTTTCTCTAAATAA 1131
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1051 ACTTTAAAATCTTATAAGCATCCAATGAGTTTTT-GTATATAAAGGGTTTCTCTAAATAA 1109
Query 1132 GCTTT-AAGTAAAGAAATTGTAGCTAAAGAAA-GTTTGTATTATTGTAGT 1179
||||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1110 GCTTTTAAGTAAAGAAATTGTAGCTAAA-AAATGTTTGTATTATTGTAGT 1158
> Ahg945248 jgi|Araly1|945248|scaffold_701477.1
Length=823
Score = 254 bits (137), Expect = 1e-66
Identities = 286/354 (81%), Gaps = 26/354 (7%)
Strand=Plus/Plus
Query 608 AAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGAT-TGGTCACATGCACAACAAGAGA 666
||||||||| |||||||| || ||||||| |||||| |||| ||| | | || || ||
Sbjct 449 AAAGAGTGTGAGCTCGGGAAACCTGAGCTCAATGGATATGGT-ACA-G--C-ACGAG-GA 502
Query 667 CTGTAATGATTCAGAATTTTCCTGATTTCGAT--TTTGG-TTATGGAATGCGAAGAGCCT 723
|| ||||||||| || ||||||||| | ||| |||||| ||| |||||||||
Sbjct 503 -TGCGGTGATTCAGAGCTTCCCTGATTTCCCTCCAGTGGATTATGGCATGAGAAGAGCCT 561
Query 724 TTAGTGAAGGCGACATACAGAAACTTGGG----------GCAGGTCTTGTTCAATCTCCA 773
|||||||| |||| ||||||| || |||| || |||||||| || ||| ||
Sbjct 562 TTAGTGAAAGCGATATACAGACAC-TGGGAACTACAAATGCGGGTCTTGTCCAGTCT-CA 619
Query 774 -CTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATA 832
|| ||| | || || | || ||||| || || || |||||||||||||||||||||||
Sbjct 620 GCTGGATCGAATAATCATAAGTTGCACCTCTGAGGACCGCCGTGAGAAGCTTTCTCGATA 679
Query 833 CAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGC 892
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 680 CAGGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAAATCAAGTATGCTTGCAGGAAGGC 739
Query 893 TCTTGCAGATAGCCAACCGA-GAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGA 945
||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 740 ACTTGCAGATAGTCAACCGAGGA-TCCGAGGAAGGTTTGCGAAAACAGAGGAGA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5