BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53430.1
Length=3937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949934 jgi|Araly1|949934|scaffold_801821.1 4287 0.0
Ahg945247 jgi|Araly1|945247|scaffold_701476.1 2638 0.0
Ahg495065 jgi|Araly1|495065|fgenesh2_kg.8__881__AT5G50080.1 54.7 5e-06
> Ahg949934 jgi|Araly1|949934|scaffold_801821.1
Length=3194
Score = 4287 bits (2321), Expect = 0.0
Identities = 2475/2551 (97%), Gaps = 4/2551 (0%)
Strand=Plus/Plus
Query 1076 AGCAGCGTTATGTAGATGATGAGCCTCGTCCTAAGAAAGAAGGTGTTTATGGGCCAGAGG 1135
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 639 AGCAGCGTTATGTAGATGATGAGCCTCGTCCTAAGAAAGAGGGTGTTTATGGGCCAGAGG 698
Query 1136 ATTTTTATTCTGGTGATTTGGTTTGGGGTAAATCCGGGAGGAATGAGCCGTTTTGGCCGG 1195
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 699 ATTTTTATTCGGGTGATTTGGTTTGGGGTAAATCTGGGAGGAAAGAGCCGTTTTGGCCGG 758
Query 1196 CTATTGTTATTGATCCAATGACGCAAGCGCCTGAGCTTGTTTTGCGTTCTTGTATACCTG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CTATTGTTATTGATCCAATGACGCAAGCGCCTGAGCTTGTTTTGCGTTCTTGTATACCTG 818
Query 1256 ATGCAGCTTGTGTTATGTTCTTTGGTCACTCTGGGACAGAGAATGAAAGGGATTATGCAT 1315
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 819 ATGCAGCCTGTGTTATGTTCTTTGGTCATTCTGGGACAGAGAATGAAAGGGATTATGCAT 878
Query 1316 GGGTTAGGAGAGGGATGATTTTCCCATTTGTGGATTATGTAGAGAGGTTACAAGAACAGT 1375
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 879 GGGTTAGAAGAGGGATGATTTTCCCATTTGTGGATTATGTAGACAGGTTTCAAGAACAGT 938
Query 1376 CTGAACTGCGTGGATGCAACCCTAGGGATTTTCAGATGGCACTTGAAGAAGCTCTTTTGG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CTGAACTGCGTGGATGCAACCCTAGGGATTTTCAGATGGCACTTGAAGAAGCTCTTTTGG 998
Query 1436 CAGACCAAGGGTTTACAGAAAAGCTGATGCAGGATATTCACATGGCCGCTGGTAACCAGA 1495
||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 999 CAGACCAAGGGTTCACAGAAAAGCTGATGCAGGATATTCACTTGGCCGCAGGTAACCAGA 1058
Query 1496 CTTTTGATGATTCTGTCTACAGATGGGTTGAAGAAGCTGCAGGCTCGAGCCAATATCTTG 1555
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1059 GTTTTGATGATTCTGTCTACAGATGGATTGAAGAAGCTGCAGGCTCGAGCCAATATCTTG 1118
Query 1556 ATCACGTTGCTCCAAGCCAGGACATGAAGAAATACAGAAATCCAAGAGCCTGTGTAGGAT 1615
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATCACGTTGCTCCAAACCAGGACATGAAGAAATACAGAAATCCAAGAGCCTGTGTAGGAT 1178
Query 1616 GTGGAATGGTCCTTTCTTTTAAGATGGCACAGAAAATGAAAGCTCTGATTCCCGGAGATC 1675
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GTGGAATGATTCTTTCTTTAAAGATGGCACAGAAAATGAAAGCTCTGATTCCCGGAGATC 1238
Query 1676 AATTATTGTGTCAACCTTGTTCAAAGCTGACAAAACCGAAACACGTTTGTGGGATATGCA 1735
||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1239 AATTATTGTGTAAACCTTGTTCAAGGCTGACAAAACCGAAACAGGTTTGTGGGATATGCA 1298
Query 1736 AGAGGATATGGAATCATTTGGATAGTCAGAGCTGGGTGCGTTGTGATGGGTGTAAAGTCT 1795
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 AGAAGATATGGAATCATTTGGATAGTCAGAGCTGGGTGCGTTGTGATGGGTGTAAAGTCT 1358
Query 1796 GGATTCACTCAGCGTGTGATCAAATATCACATAAGCATTTTAAGGATTTGGGGGAAACAG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GGATTCACTCAGCGTGTGATCAAATATCACATAAGCATTTTAAGGATTTGGGGGAAACAG 1418
Query 1856 ATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAAC 1915
|||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 1419 ATTACTATTGTCCCACATGCAGAACAAAATTTAACTTTGAGTTATCAGATTCAGAAAAAC 1478
Query 1916 CAGACTCAAAATCCAAACTTGGCAAAAACAATGCCCCGATGGTGCTTCCTGATAAAGTTA 1975
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1479 AAGACTCAAAATCCAAACTTGGCAAAAGCAATGCCCCAATGGTGCTTCCTGATAAAGTTA 1538
Query 1976 TTGTTGTATGCTCTGGAGTTGAAGGCATATATTTTCCAAGCCTTCATTTAGTCGTATGTA 2035
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TTGTTGTATGCTCTGGAGTAGAAGGCATATATTTTCCAAGCCTTCATTTAGTCGTATGTA 1598
Query 2036 AGTGTGGATCTTGTGGACCTGAAAGGAAAGCACTTAGTGAATGGGAGAGGCATACTGGTT 2095
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1599 AGTGTGGATCTTGTGGACCTGAAAGGAAAGCACTTAGTGAATGGGAAAGGCATACTGGTT 1658
Query 2096 CAAAAGCAAAAAATTGGAGAACTAGTGTTAAAGTTAAAAGCTCCAAGCTGCCTCTAGAAG 2155
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1659 CAAAAGCAAAAAATTGGAGAACTAGTGTTAAAGTTAAAAGCTCCAAGCTGCCGCTAGAAG 1718
Query 2156 AATGGATGATGAAATTAGCAGAGTTCCACGCAAATGCTACTGCAGCAAAACCTCCTAAAC 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 AATGGATGATGAAATTAGCAGAGTTCCACGCAAATGCTACTGCAGCAAAACCTCCTAAAC 1778
Query 2216 GACCTTCTATAAAGCAGAGAAAGCAAAGGTTACTTTCCTTTCTTAGAGAAAAGTATGAGC 2275
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1779 GACCCTCTATAAAGCAGAGAAAGCAGAGGTTGCTTTCCTTTCTTAGAGAAAAGTACGAGC 1838
Query 2276 CGGTCAACGTGAAATGGACAACCGAGCGATGTGCAGTTTGCAGATGGGTGGAAGATTGGG 2335
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1839 CGGTCAACGTGAAGTGGACAACCGAGCGATGTGCAGTTTGCAGATGGGTTGAAGATTGGG 1898
Query 2336 ACTACAACAAGATCATTATCTGCAACAGATGTCAAATAGCAGTTCATCAGGAATGCTATG 2395
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1899 ACTACAACAAGATCATTATCTGCAACAGATGTCAAATCGCAGTTCATCAGGAATGCTATG 1958
Query 2396 GGACGAGAAACGTTCGTGACTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGA 2455
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 GGACGAGAAACGTTCGTGATTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGA 2018
Query 2456 TCAAACGAGAGTGTTGCCTCTGTCCTGTAAAAGGAGGTGCATTAAAGCCAACTGATGTGG 2515
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2019 TCAAACGAGAGTGTTGCCTCTGTCCTGTAAAAGGAGGTGCATTGAAGCCAACTGATGTGG 2078
Query 2516 AGACACTGTGGGTTCACGTGACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTG 2575
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 AGACGCTGTGGGTTCACGTAACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTG 2138
Query 2576 AAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGA 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 AAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGA 2198
Query 2636 TTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGT 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 TTTGTGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGT 2258
Query 2696 ATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGTTGCACTGCTTGGAGA 2755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 ATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGTTGCACTGCTTGGAGA 2318
Query 2756 AAAATGGTCGACAGATAACAAAGATGGTGTCGTATTGTTCTTATCACAGGGCTCCGAATC 2815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 AAAATGGTCGACAGATAACAAAGATGGTGTCGTATTGTTCTTATCACAGGGCTCCGAATC 2378
Query 2816 CAGATACTGTGTTAATTATACAGACGCCTTCAGGGGTCTTTTCTGCGAAAAGTCTTGTTC 2875
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2379 CAGATACTGTATTAATAATACAAACGCCTTCAGGGGTCTTTTCTGCGAAAAGTCTTGTTC 2438
Query 2876 AAAATAAAAAGAAATCTGGTACGAGGCTTATTTTAGCAAACAGAGAAGAAATTGAAGAGT 2935
|||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2439 AAAATAAAAAGAAAACAGGTTCGAGGCTTATTTTAGCAAACAGAGAAGAAGTTGAAGAGT 2498
Query 2936 CTGCCGCAGAGGATACCATACCAATTGATCCATTTTCTTCTGCTCGTTGTCGACTATATA 2995
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2499 CCGCCGCAGAGGATACCATACCAATTGACCCATTTTCTTCTGCTCGTTGTCGACTATATA 2558
Query 2996 AAAGAACGGTTAATAGCAAGAAGAGGACGAAAGAAGAAGGTATTCCTCACTACACAGGAG 3055
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 2559 AAAGAACGGTTAATAGCAAGAAGAGGACTAAAGAAGAAGGTATTCCTCACCACAAAGGAG 2618
Query 3056 GACTACGTCATCATCCATCCGCAGCGATCCAAACTTTGAACGCATTCAGGCATGTGGCAG 3115
||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2619 GACCACGTCATCATCCTTCAGCAGCGATCCAAACTTTGAACGCATTCAGGCATGTGGCAG 2678
Query 3116 AAGAACCCAAATCATTTTCCTCGTTCAGGGAACGGCTTCACCACTTGCAGAGGACAGAAA 3175
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2679 AAGAGCCCAAATCATTTTCCTCGTTCAGGGAACGGCTTCACCACTTGCAGAGGACAGAAA 2738
Query 3176 TGGAACGGGTCTGCTTTGGTCGATCTGGTATACATGGATGGGGCCTTTTTGCGAGAAGAA 3235
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2739 TGGATCGGGTCTGCTTTGGTCGATCTGGGATACATGGATGGGGCCTTTTTGCAAGAAGAA 2798
Query 3236 ATATTCAAGAAGGAGAAATGGTTCTTGAATACCGTGGGGAACAAGTGAGAGGAATCATTG 3295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2799 ATATTCAAGAAGGAGAAATGGTTCTTGAATACCGTGGGGAACAAGTGAGAGGAATCATTG 2858
Query 3296 CAGACTTAAGGGAAGCAAGATATCGAAGAGAAGGGAAGGATTGCTACCTGTTTAAGATCA 3355
| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 2859 CGGACTTAAGGGAAGCAAGATATCGTAGGGAAGGGAAGGATTGCTATCTGTTTAAGATCA 2918
Query 3356 GTGAGGAAGTAGTGGTGGATGCGACAGAGAAAGGGAATATTGCTCGACTAATAAACCATT 3415
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2919 GTGAGGAAGTAGTGGTGGATGCGACAGAAAAAGGGAATATCGCTCGACTAATAAACCATT 2978
Query 3416 CGTGTATGCCAAATTGCTATGCAAGGATTATGAGTGTAGGAGATGACGAAAGTCGGATTG 3475
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2979 CGTGTATGCCAAATTGCTATGCAAGGATTATGAGTGTAGGAGATGATGAAAGTCGGATTG 3038
Query 3476 TTCTGATTGCCAAGACCACTGTAGCTTCCTG-CGAGGAGTTAACATACGATTACTTGTTT 3534
|||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 3039 TTCTGATTGCCAAGACCACTGTAGCTTC-TGGCGAGGAGTTAACATATGATTACTTGTTT 3097
Query 3535 GATCCAGATGAACCTGATGAATTCAAGGTGCCGTGTCTATGTAAATCCCCCAACTGCAGG 3594
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 3098 GATCCAGATGAGCCTGACGAATTCAAGGTGCCGTGTCTATGTAAATCCCCTAACTGCAGG 3157
Query 3595 AAATTCATGAATTAGAGA--GTTTTATGTAG 3623
|||||||||||||||||| |||||||||||
Sbjct 3158 AAATTCATGAATTAGAGAAAGTTTTATGTAG 3188
Score = 291 bits (157), Expect = 4e-77
Identities = 163/166 (98%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 754 GTTTCACGGCCACCGCTTGTGAAGACATCTAGAGGAAGAGTTCAGGTGCTTCCTTCACGG 813
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 317 GTTTCACGGCCACCGCTTGTGAGGACATCTAGAGGAAGAGTTCAGGTGCTTCCTTCACGG 376
Query 814 TTTAATGACTCGGTTATCGAGAATTGGAGGAAAGATAATAAAAGTAGTGGCGAAGAACGC 873
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 377 TTTAATGACTCGGTTCTCGAGAATTGGAGGAAAGATAGTAAAAGTAGTGGCGAAGAACGC 436
Query 874 GAGGAAGAGATTGAAGAAGAAGCATGCAGGAAGGAGAAAGTCAAAG 919
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GAGGAAGAGATTGAAGAAGAAGCATGCAGGAAGGAGAAAGTCAAAG 482
Score = 204 bits (110), Expect = 5e-51
Identities = 160/182 (88%), Gaps = 11/182 (6%)
Strand=Plus/Plus
Query 504 TTTGAAACGATGTAATTCGACTAATGAAGAAGATGATATAGTTCGGAAGAAGAGAAAGGT 563
||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||
Sbjct 61 TTTGAAACGATGTAACTCGACTAATGAAGAAGATGATAGAGCTAAGAAGAAGAGAAAGGT 120
Query 564 CAACCTCAATGGTGGTGGTAGTGGTGGTGATTACTATTACCCTCTTAATCTTCTTGGA-G 622
|||| |||| | | ||||||||||||||||||| ||||||||||||||| || |
Sbjct 121 CAACTTCAA------T-G--GTGGTGGTGATTACTATTATCCTCTTAATCTTCTT-GATG 170
Query 623 AGATTGGTGCTGGGATTGTTCCTGGTAAGAATGGATTCTCTGTTTCTTTGTGTAAGCAAG 682
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 171 AGATTGGTGTTGGGATAGTTCCGGGTAAGAATGGATTCTCTGTTTCTTTGTGTAAGGAAG 230
Query 683 TT 684
||
Sbjct 231 TT 232
Score = 178 bits (96), Expect = 3e-43
Identities = 116/125 (93%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 956 AAA-CTAAATTTACTCCTAGGAACTATAAGTATAGTAGTAGTAGTGCATTGTGTGGAGAG 1014
||| ||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||
Sbjct 479 AAAGCTAAATTTACTCCTAGGAACTTTAAGTATAGTAGTAGT-G--CATTGTGTGAAGAG 535
Query 1015 ATAGATGATGAGGATAAATGTGAAGAGATTGTTAGATATGGTAATAGCTTTGAGATGAAG 1074
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 536 AGAGATGATGAGGATAAATGTGAAGAGATTGGTAGATATGGTAATAGCTATGAGATGAAG 595
Query 1075 AAGCA 1079
|||||
Sbjct 596 AAGCA 600
> Ahg945247 jgi|Araly1|945247|scaffold_701476.1
Length=3121
Score = 2638 bits (1428), Expect = 0.0
Identities = 2181/2541 (86%), Gaps = 65/2541 (3%)
Strand=Plus/Plus
Query 1104 TCCTAAGAAAGAAGGT-GTTTATGGGCCAGAGGATTTTTATTCTGGTGATTTGGTTTGGG 1162
||| || ||| ||||| ||| |||||| ||| | || ||||| ||||| ||||||| ||
Sbjct 588 TCCAAATAAACAAGGTACTTT-TGGGCCTGAGAACTTCTATTCAGGTGACTTGGTTT-GG 645
Query 1163 GTAAA-TCCGGGAGGAATGAGCCGTTTTGGCCGGCTATTGTTATTGATCCAATGACGCAA 1221
| ||| || ||||| ||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct 646 GCAAAGTCTGGGAGAAATGAGCCGTTTTGGCCTGCCATTGTTATCGATCCAATGACACAA 705
Query 1222 GCGCCTGAGCTTGTTTTGCGTTCTTGTATACCTGATGCAGCTTGTGTTATGTTCTTTGGT 1281
|| || |||||||||||||||||||||||||| ||||| || |||||| |||||||||||
Sbjct 706 GCACCCGAGCTTGTTTTGCGTTCTTGTATACCCGATGCTGCCTGTGTTGTGTTCTTTGGT 765
Query 1282 CACTCTGGG-ACAGAGAATGAAAGGGATTATGCATGGGTTAGGAGAGGGATGATTTTCCC 1340
||||||||| || |||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct 766 CACTCTGGGAAC-GAGAATGAAAGGGACTACGCATGGGTGAGGAGAGGGATGATCTTCCC 824
Query 1341 ATTTGTGGATTATGTAGAGAGGTTACAAGAACAGTCTGAACTGCGTGGATGCAACCCTAG 1400
|||||||||||||| | ||||| || |||||||||||||||| || ||||| ||| |
Sbjct 825 TTTTGTGGATTATGTTGCCAGGTTCCAGGAACAGTCTGAACTGCAAGGTTGCAAGCCT-G 883
Query 1401 GG-ATTTTCAGATGGCACTT-GAAGAAGC-TCTTTTGGCAGACCAAGGG-TTTACAGAAA 1456
|| |||||||||||||| || || ||||| | |||||||||| | |||| || || || |
Sbjct 884 GGAATTTTCAGATGGCA-TTGGAGGAAGCAT-TTTTGGCAGATC-AGGGATTCACGGAGA 940
Query 1457 AGCTGATGCAGGATATTCACATGGCCGCTGGTAACCAGACTTTTGATGATTCTGTCTACA 1516
|| ||||||| ||||||||| |||| |||||||||| ||||||||| |||||| ||||||
Sbjct 941 AGTTGATGCATGATATTCACTTGGCTGCTGGTAACCCGACTTTTGACGATTCTTTCTACA 1000
Query 1517 GATGGGTTGAAGAAGCTGCAGG-CTC-GAGCCAATATCTTGATCACGTTGCTCCAAGCCA 1574
||||| || ||||| |||| || ||| || || |||| || || |||||||| |||
Sbjct 1001 GATGGATTCAAGAAACTGC-GGTCTCAAAG-CAGGATCTCAATAACAATGCTCCAACCCA 1058
Query 1575 -GGACATG---AAGAAATACAGAAATCCAAGAGCCTGTGTAGGATGTGGAATGGTCCTTT 1630
|| | || |||||| ||||||||||| ||| |||| |||||||| || |||| |||
Sbjct 1059 GGGGC-TGTTAAAGAAACACAGAAATCCACTAGCATGTGCAGGATGTGAAACGGTCATTT 1117
Query 1631 CTTTTAAGATGGCACAGAAAATGAAAGCTCTGATTCCCGGAGATCAATTATTGTGTCAAC 1690
||||| |||||||| | |||||||||||||||||||| |||||||| || |||||| |||
Sbjct 1118 CTTTTGAGATGGCAAAAAAAATGAAAGCTCTGATTCCTGGAGATCAGTTGTTGTGTAAAC 1177
Query 1691 CTTGTTCAAAGCTGACAAAACCGAAACACGTTTGTGGGATATGCAAGAGGATATGGAATC 1750
| ||||||| | | |||||| | |||||| ||||||| |||||||||| |||| ||||||
Sbjct 1178 CATGTTCAAGGTTAACAAAATCAAAACACATTTGTGGTATATGCAAGAAGATAAGGAATC 1237
Query 1751 ATTTGGATAGTCAGAGCTGGGTGCGTTGTGATGGGTGTAAAGTCTGGATTCACTCAGCGT 1810
||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||| ||| ||
Sbjct 1238 ATTTGGACAGTCAAAGCTGGGTGCGCTGTGATGGTTGTAAAGTCTGGATACACGCAGAGT 1297
Query 1811 GTGATCAAATATCACATAAGCATTTTAAGGATTTGGGGGAAACAGATTACTATTGTCCCA 1870
|||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1298 GTGACCAAATATCAGATAAGCATTTGAAGGATTTGGGGGAAACAGATTACTACTGTCCTA 1357
Query 1871 CATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCA 1930
| |||||| | |||||| | ||||| ||||||||||||||||||| | || |||| || |
Sbjct 1358 CTTGCAGAGCTAAATTTAACTTTGACCTATCAGATTCAGAAAAACAAAACACAAAGTCAA 1417
Query 1931 AACTTGGCAAAAACAATGCCCCGATGGTGCTTCCTGATAAAGTTATTGTTGTATGCTCTG 1990
||||||||||| | ||| | |||||| |||||||| || ||||||||||||||| |||
Sbjct 1418 AACTTGGCAAAGGCGATGGTCAGATGGTTCTTCCTGACAAGGTTATTGTTGTATGCGCTG 1477
Query 1991 GAGTTGAAGGCA-TATATTTTCCAAGCCTTCATTTAGTCGTATGTAAGTGTGGATCTTGT 2049
|||| ||||| | | |||||||| || || |||||||| |||||||||||||| || |||
Sbjct 1478 GAGTAGAAGG-AGTTTATTTTCCGAGGCTCCATTTAGTGGTATGTAAGTGTGGCTCCTGT 1536
Query 2050 GGACCTGAAAGGAAAGCACTTAGTGAATGGGAGAGGCATACTGGTTCAAAAG-CAAAAAA 2108
||||| ||| |||||| ||||| |||||||| || ||||| || || |||| |||||||
Sbjct 1537 GGACCCAAAAAGAAAGCCCTTAGCGAATGGGAAAGACATACCGGATC-AAAGTCAAAAAA 1595
Query 2109 TTGG-AGAACTAGTGTTAAAGTTAAAAGCTCCAAGCTGCCTCTAGAAGAATGGATGATGA 2167
|||| || || ||||| ||||| |||||||| |||||| | |||||||| ||||||||||
Sbjct 1596 TTGGAAG-ACCAGTGTGAAAGTCAAAAGCTCTAAGCTGGCACTAGAAGATTGGATGATGA 1654
Query 2168 AATTAGCAGAGTTCCACGCAAATGCTACTGCAGCAAAACCT-CCTAAACGACCTTCTATA 2226
||||||||||||| || ||||||||||||||||| ||| | |||||||||||||| |||
Sbjct 1655 AATTAGCAGAGTTACATGCAAATGCTACTGCAGCTAAA-GTGCCTAAACGACCTTCCATA 1713
Query 2227 AAGCAGAGAAAGCAAAGGTTACTTTCCTTTCT-T-AGAGAAAAGTATGAGCCGGTCAACG 2284
|||||||||||||| || || ||| | ||||| | |||| | | |||||||||||||| |
Sbjct 1714 AAGCAGAGAAAGCAGAGATTGCTTGCTTTTCTATCAGAG-ACA-TATGAGCCGGTCAATG 1771
Query 2285 TGAAATGGACAACCGAGCGATGTGCAGTTTGCAGATGGGTGGAAGATTGGGACTACAACA 2344
||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1772 CGAAGTGGACAACAGAACGATGTGCAGTTTGCAGATGGGTTGAAGATTGGGACTACAACA 1831
Query 2345 AGATCATTATCTGCAACAGATGTCAAATAGCAGTTCATCAGGAATGCTATGGGACG--AG 2402
|||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||
Sbjct 1832 AGATTATTATCTGCAACAGATGCCAAATAGCAGTGCATCAGGAATGCTAT--GACGCTAG 1889
Query 2403 AAACGTTCGTGACTTCACATCATGGGTCTGCAAAGCCTGCGAGACACCTGAGATCAAACG 2462
| | || ||||| ||||| ||||||||||| ||||| || |||| ||| || || || ||
Sbjct 1890 ACATGTGCGTGATTTCACCTCATGGGTCTGTAAAGCATGTGAGAGACCAGATATTAAGCG 1949
Query 2463 AGAGTGTTGCCTCTGTCCTGTAAAAGGAGGTGCATTAAAGCCAACTGATGTGGAGACACT 2522
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1950 GGAGTGTTGCCTCTGCCCTGTAAAAGGAGGTGCATTGAAGCCAACTGATGTGGAAACGTT 2009
Query 2523 GTGGGTTCACGTGACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAA 2582
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2010 GTGGGTTCATGTGACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAGGAAAA 2069
Query 2583 AATGGAACCAGCT-TTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGATTTGTG 2641
||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2070 AATGGAACCTGCAGTTGGG-ATTTTGAGTATTCCATCAACTAATTTTGTGAAGATATGTG 2128
Query 2642 TAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATC 2701
|||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 2129 TAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATC 2188
Query 2702 ATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGTTGCACTGCTTGGAGAAAAATG 2761
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2189 ATGCCATGTGTGCCTCCCGAGCTGGTTATAGAATGGAGTTGCACTGCTTGGAGAAAAATG 2248
Query 2762 GTC-GACAGATAACAAAGATGGTGTCGTATTGTTCTTATCACAGGGCTCCGAATCCAGAT 2820
||| | ||||| |||||||||||||| |||||| ||||||| |||||||| || ||||||
Sbjct 2249 GTCAG-CAGATTACAAAGATGGTGTCCTATTGTGCTTATCATAGGGCTCCAAACCCAGAT 2307
Query 2821 A-CTGTGTTAATTATACAGACGCCTTCAGGGGTCTTT-TCTGCGAAA-AGTCTTGTTCAA 2877
| | |||||||||||||| || |||||||||| | || ||||| ||| |||||||| |||
Sbjct 2308 AAC-GTGTTAATTATACAAACTCCTTCAGGGG-CATTCTCTGC-AAAGAGTCTTGTCCAA 2364
Query 2878 AATAAAAAGAAATCTGGTACGAGGCTTATTTTAGCAAACAGAGAAGA-AATTGAAGAGTC 2936
|| || |||||| |||| | |||||||||| | ||| |||||||| ||| ||||||||
Sbjct 2365 AACAAGAAGAAAGGTGGTTCCAGGCTTATTTCATCAATTAGAGAAGACAAT-GAAGAGTC 2423
Query 2937 TGCC-GCAGAGGATACCAT-ACCAATTGATCCATTTTCTTCTGCTCGTTGTCGACTATAT 2994
|| |||||||||||||| || | ||||||||||||| |||||||||||||| ||| |
Sbjct 2424 A-CCTGCAGAGGATACCATTAC-ACGTGATCCATTTTCTGCTGCTCGTTGTCGAGTATTT 2481
Query 2995 AAAAGAACGGTTAATAGCAAGAAGAGGAC-GAAAGAAGAAGGTATTCCTCACTACACA-G 3052
||||||| | | |||||||||||||||| ||| ||||||| ||||||||| ||||| |
Sbjct 2482 AAAAGAAAGATCAATAGCAAGAAGAGGATTGAA-GAAGAAGCCATTCCTCACCACACAAG 2540
Query 3053 GAGGACTACGTCATCATCCATCCGCAGCGATCCAAACTTTGAACGCATTCAGGCATGTGG 3112
| |||| ||| ||||||||||| ||||| ||||||||| | ||| ||||||| ||||||
Sbjct 2541 G-GGACCACGCCATCATCCATCAGCAGCAATCCAAACTCTAAACACATTCAGACATGTGC 2599
Query 3113 CAGAAGAACCCAAATCATTTTCCTCGTTCAGGGAACGGCTTCACCACTTGCAGAGGACAG 3172
| |||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 2600 CGGAAGAACCAAAATCGTTTTCTTCTTTCAGGGAACGACTTCACCACTTGCAGAGGACAG 2659
Query 3173 AAATGGAACGGGTCTGCTTTGGTCGATCTGGTATACATGGATGGGGCCTTTTTGCGAGAA 3232
||||||| |||||||||||||| |||||||| |||||||||||||| ||||| || ||||
Sbjct 2660 AAATGGATCGGGTCTGCTTTGGGCGATCTGGAATACATGGATGGGGTCTTTTCGCAAGAA 2719
Query 3233 GAAATATTCAAGAAGGAGAAATGGTTCTTGAATACCGTGGGGAACAAGTGAGAGGAATCA 3292
||||||| ||||||||||||||||||||||||||| | |||||||| |||||||| | ||
Sbjct 2720 GAAATATCCAAGAAGGAGAAATGGTTCTTGAATACAGAGGGGAACAGGTGAGAGGCAGCA 2779
Query 3293 TTGCAGACTTAAGGGAAGCAAGATATCGAAGAGAAGGGAAGGATTGCTACCTGTTT-AAG 3351
|||||||||| || |||||| | ||||| |||| ||||||||||||||| || ||| |||
Sbjct 2780 TTGCAGACTTGAGAGAAGCACGGTATCGCAGAGTAGGGAAGGATTGCTATCT-TTTCAAG 2838
Query 3352 ATCAGTGAGGAAGTAGTGGTGGATGCGACAGAGAAAGGGAATATTGCTCGACTAATAAAC 3411
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| || || |||
Sbjct 2839 ATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAAC 2898
Query 3412 CATTCGTGTATGCCAAATTGCTATGCAAGGATTATGAGTGTAGGAGATGACGAAAGTC-G 3470
|||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||| | |
Sbjct 2899 CATTCGTGTACGCCAAATTGCTATGCGAGGATTATGAGTGTGGGAGATGAGGAAAG-CAG 2957
Query 3471 GATTGTTCTGATTGCCAAGACCACTGTAGCT-TCCTGCGAGGAGTTAACATACGATTACT 3529
|||||| ||||| |||||| ||| ||||||| | | ||||||||||| || |||||||
Sbjct 2958 GATTGTCCTGATAGCCAAGGCCAATGTAGCTGTGG-GAGAGGAGTTAACGTATGATTACT 3016
Query 3530 TGTTTGATCCAGATGAACCTGATGAATTCAAGGTGCCGTGTCTATGTAAATCCCCCAACT 3589
| ||||||||||| || | || ||| |||||||||| || ||||||||| |||||||||
Sbjct 3017 TATTTGATCCAGACGAGGCAGAGGAACTCAAGGTGCCATGCCTATGTAAAGCCCCCAACT 3076
Query 3590 GCAGGAAATTCATGAATTAGA 3610
|||||||||||||||||||||
Sbjct 3077 GCAGGAAATTCATGAATTAGA 3097
> Ahg495065 jgi|Araly1|495065|fgenesh2_kg.8__881__AT5G50080.1
Length=874
Score = 54.7 bits (29), Expect = 5e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 707 TGGTGGAGGAAGAAGAGGAGGAGGAGGAG 735
|||||||||||||||||||||||||||||
Sbjct 674 TGGTGGAGGAAGAAGAGGAGGAGGAGGAG 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148805110430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5