BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53450.1
Length=2383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495417 jgi|Araly1|495417|fgenesh2_kg.8__1233__AT5G53450.1 3561 0.0
> Ahg495417 jgi|Araly1|495417|fgenesh2_kg.8__1233__AT5G53450.1
Length=2330
Score = 3561 bits (1928), Expect = 0.0
Identities = 2217/2351 (94%), Gaps = 41/2351 (2%)
Strand=Plus/Plus
Query 1 TCGAGGCGCGATGCCTCAGGCGTACTTCATCACGCAACTATCACGAGCCTCTCTGTCGTT 60
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 TCGAGGCGCGATGCCTCAGGCGTACTTCATCACGCAACTCTCACGAGCTTCTCTGTCGTT 60
Query 61 ATATACGACTTTC-AGTTTTTCTTCTGATTTGGGAAAGAATCAAACTTTTGAATGTGAAG 119
||||||||||||| | ||||||||||||||| ||||||||||||| || | ||||
Sbjct 61 ATATACGACTTTCTA-TTTTTCTTCTGATTTTCGAAAGAATCAAAC--TT---T-TGAA- 112
Query 120 TTGCTTCTTTCGTCTCAAGATCTCTCTTTATCTCTCTATCTGTTTGATTGAGGGTTTTTG 179
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ----TTC-TTCGTCTCGAGATCTCTCTTTATCTCTCTATCTGTTTGATTGAGGGTTTTTG 167
Query 180 TTGGATGGCACTTTGTGGTGTTTGTTCGACTCCAAATCTGCCGAATTTACAAGTGTTTCG 239
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 168 TTGGATGGCACTTTGTGGTGTTTGTTCGACTCCAAATCTACCGAATTTGCAAGTGTTTCG 227
Query 240 TTCTGTTAGGAACTCGAGCATTGGTTAT-AAACGAAACCATAGTCTATGGCAGCT-CAGA 297
||||||||| |||||||||||||||| | |||||||||||||||||| ||||| | || |
Sbjct 228 TTCTGTTAGAAACTCGAGCATTGGTT-TGAAACGAAACCATAGTCTACGGCAG-TCCACA 285
Query 298 AGTTCATCATTTCGTGCTAAATCTGTGATATTTCATTGTTCATCGTCCTTAAGACAGTCA 357
|| | ||||||||||| ||| ||||| |||| |||||||||| |||||||||| ||||
Sbjct 286 AG-T--TCATTTCGTGCAAAAGATGTGAGATTTAATTGTTCATCCTCCTTAAGACCGTCA 342
Query 358 CCATCTAATGTGGA-G-G--AGAT-A-GA---TG---ATAATCCTTCGGTATCATTAGA- 404
||||||||||||| | | |||| | || || ||||||||||||| || || ||
Sbjct 343 TCATCTAATGTGGAGGAGATAGATGAGGATGTTGATAATAATCCTTCGGTGTCGTTGGAT 402
Query 405 GGATGAATCAGCACATGTGATGCAGTTCAAGTGGTCTGATTTTAGGATTCTTGATCGTGT 464
|| |||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 403 GG-TGAATCAGCAAATGTGATGCAGTTCAAGTGGTCTGATTTCAAGATTCTTGATTGTGT 461
Query 465 TAGCATTGGTCATGGCGGCAGGGCTGATGAGCTTGTGTTTGAAGCTATAGTTCAGGTTCC 524
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 462 TAGCATTGGTCATGGCGGCAGGGCCGATGAGCTTGTGTTTGAAGCTATAGTTCAGGTGCC 521
Query 525 AGATAGCCCTTTGTTTAACCAAGGAGTTGTTCTTCGGAAATTGAATACCACTCGAGCTCA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AGATAGCCCTTTGTTTAACCAAGGAGTTGTTCTTCGGAAATTGAATACCACTCGAGCTCA 581
Query 585 AAGACGAGGAAGAAGAGCTATAGAAGTTTTTAAGAAGCTAGTTCGTCGGAGACTTCTCTA 644
|||| ||||||||||||| || ||||| ||||| |||||||||||||| |||||||||||
Sbjct 582 AAGAAGAGGAAGAAGAGCCATCGAAGTGTTTAAAAAGCTAGTTCGTCGTAGACTTCTCTA 641
Query 645 CCATTCTTACTCAATGCAAGTTCACGGTTATATCACCAATAACTTAAGCGATGATCAGTA 704
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 642 CCATTCTTACTCAATGCAAGTTCACGGTTATATCACCAATAACTTGAGCGATGATCAGTA 701
Query 705 CTCATTTACCCTTGTACATGGGTGCCATGGAAGTTTCTCGATTAGGCACTGGCTTCAACA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTCATTTACCCTTGTACATGGGTGCCATGGAAGTTTCTCGATTAGGCACTGGCTTCAACA 761
Query 765 ATCTGATTGGATTCCAACATTAGAAGCTACTCTTGCATTAGATGAAGAATCCTTTCGAAG 824
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 762 ATCTGATTGGCTTCCAACATTAGAAGCTACTCTTGCATTAGATGAAGAATCTTTTAGAAG 821
Query 825 GGTGGGTGATGATACTACTGGAGGGCCTGCAGTTTCAAGGCAGTTAAGACTAATCCGTAC 884
||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 822 GGTCGGTGATGATACAACTGGAGGGCCTGCAGTCTCGAGGCAGTTAAGACTAATCCGTAT 881
Query 885 ACTAATGAGGGATATTTTGATCGGAGTCAATTACTTGCACAGCCATGGTCTGGCTCACAC 944
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 882 ACTAATGAGGGATATTTTGATTGGAGTCAATTACTTGCACAGCCATGGTCTTGCTCACAC 941
Query 945 AGAACTGAGATTGGAAAATGTGCATATTAGCCCTGTGGATAGACATATCAAAGTAGGGAT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AGAACTGAGATTGGAAAATGTGCATATTAGCCCTGTGGATAGACATATCAAAGTAGGGAT 1001
Query 1005 TCTCGGAAATGCTGCTGACTTTAACGGGGATGTTCCAAGTACTAGCAACGCTTACAGTAC 1064
||| |||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1002 TCTTGGAAATGCAGCTGATTTTAACGGGGATGGTCCAAGTACTAGCAGCGCTTACAGTAC 1061
Query 1065 CATGGACAGACGACAAATGATGATAGCATTTGACATGAGATGTGTTGGATTCATGATGGC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CATGGACAGACGACAAATGATGATAGCATTTGACATGAGATGTGTTGGATTCATGATGGC 1121
Query 1125 AAAAATGGTACTTCAAGAATTGATGGATCCATTAATCTTTGCGAAATTGAAGTCTTTCCT 1184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1122 AAAAATGGTACTTCAAGAATTGATGGATCCATTAATCTTTGCGAAATTGAAGTCTTTCTT 1181
Query 1185 GGCAAAGGGGAATGATCCTTCCTCGCTGCGGGAGTTTTTTGTGACGACGCTCAATACAAA 1244
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1182 GGCAAAGGGGAATGATCCTTCCTCGCTACGAGAGTTCTTTGTGACGACGCTCAATACAAA 1241
Query 1245 CTCTGAATCTGGAAATACCGGAGTGCAAATACTTGATAGAAACTGGGGAGCAGGTTGGCA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CTCTGAATCTGGAAATACCGGAGTGCAAATACTTGATAGAAACTGGGGAGCAGGTTGGCA 1301
Query 1305 CCTTTTATCTTTGTTAATTGCTACCAGACCTTCTGAAAGAATAAGTTGCTTGGATGCTCT 1364
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1302 CCTTTTATCTTCGTTAATTGCTACCAGACCTTCTAAAAGAATAAGTTGCTTGGATGCTCT 1361
Query 1365 TAAGCATCCCTTTCTATGTGGACCAAGATGGCGTGTTGCCCCATCAATGGATATCATCAG 1424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TAAACATCCCTTTCTATGTGGACCAAGATGGCGTGTTGCCCCATCAATGGATATCATCAG 1421
Query 1425 ATGGGGTCTTGGATCAACCGCAGTAAAGATTTCAGAAGAATACATTTACCGCATGCCTCA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 ATGGGGTCTTGGATCAACCGCAGTAAAGATTTCAGAAGAATACATTTACCGCATGCCTCA 1481
Query 1485 GCGCCAAAGACTTGCCCACTTCATTGGACTGATGGAGATGCTAAATCCTTATCCAAAGCC 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1482 GCGCCAAAGACTTGCCCACTTCATTGGACTGATGGAGATGCTAAATCCTTATCCAAAACC 1541
Query 1545 AAACTGTTGGTTGGAGCTTTTACCGGGAAGATGGCGTCTTTTATACTCAACTGGAAAGCA 1604
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1542 AAACTGTTGGTTGGAGCTTTTACCGGGAAGATGGCGTCTGTTATACTCAACCGGAAAGCA 1601
Query 1605 CATAGGTCTAACTCTGCGTCAGCCTTCCACACGTGCCTTAATAGGCAACGTTCACTTAAC 1664
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1602 CATAGGTCTAACTCTGCGTCAGCCCTCAACACGTGCCTTAATAGGCAACGTTCACTTAAC 1661
Query 1665 GATAACTCGAGCTTCAGAATCCATAAACAACACTTCACTTTCCTTTACCTCTGATATACG 1724
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
Sbjct 1662 GATAACTCGAGCTTCAGAATCCGCAAACAACACTTCGCTTTCCTTTACCTCTGATATAGG 1721
Query 1725 CTTCACTGCCATAACCAGCAAAGACTGGCCACACAACAAAATCGGAGCTGCTGGGAAATT 1784
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 1722 CTTCACTGCCATCACCAGCAAAGATTGGCCACACAACAAAATCGGAGCTACTGGAAAATT 1781
Query 1785 ACAAACGCTCTCTCAATTCAGACTAATAGCTGGAAAAAGACTTTACCTCAAAGAAGAGAA 1844
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1782 ACAAACACTCTCTCAATTCAGATTAATAGCTGGAAAAAGACTTTACCTCAAAGAAGAAAA 1841
Query 1845 AAAGAACATTGGTAAGTTCTCAATGGGTGAACCAGATGCTGAAGAAGGTTTAGCCGAGAA 1904
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1842 AAAAAACATTGGTAAGTTCTCAATGGGCGAACCAGATGCTGAAGAAGGTTTAGCCGAGAA 1901
Query 1905 GCTTGAAACCGAGAAATGGAAAAAAGTCGTGCCCTTCAAGGAGTTTCCGTCGAGTCTTCC 1964
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1902 GCTTGAAACCGAGAAATGGAAAAAAGTAGTGCCCTTCAAGGAGTTTCCGTCGAGTCTTCC 1961
Query 1965 TGTAGCAAAACTCGTCTCTGGAGAAATCGAAGTGACGATGAACATGAATGATCATATAGA 2024
||||||||||||| | |||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1962 TGTAGCAAAACTCATATCTGGAGATATTGAAGTGACGATGAACATGAATGATCGTATAGA 2021
Query 2025 TTCACCTGGGAGTGTGATTGGAGAAGTTAGAAAGCAAATTCCGCCGGAAATGTTCGATCT 2084
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2022 TTCACCTGGGAGTGTGATTGGAGAAGTTAGGAAGCAAATTCCGCCGGAAATGTTCGATCT 2081
Query 2085 TTCTAAGCTTGTGTGTGGGACTTATATAGACAGTAGGTTACTTGTACTTAGGTGTGTAAA 2144
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2082 TTCTAAGCTTGTGTGTGGGACTTACATAGACAATAGGTTACTTGTACTTAGGTGTGTAAA 2141
Query 2145 TGGTTCAGCATTGTTGTTCACAAGGTCCAGCTTGGACCATAAGTCTATGTAGCCATTTGG 2204
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 2142 TGGTTCAGCATTGTTGTTCACAAGATCCAGCTTGGACCATATGTCTATGTAGCCACTTGG 2201
Query 2205 CTCAGGTTC-TTATGTATATAACAAATGAATCATTCTTTTTGGGACTAAACCGTTGTAGT 2263
|| ||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||
Sbjct 2202 ATC-GGTTCCTTATGTATATAACAAATGTATCATTCTTTTTTGGACTAAACC-TTGTAGT 2259
Query 2264 CTCTGTGTATGTTGTGGTAAT---GTATGCTTTTGGCTTTTAGGTTGTAATAAGAGCTTT 2320
|| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 2260 CTATGTGTATGTTGTGGTAATAATGTTTGCTTTTGGCTTTGAGGTTGTAATAAGAGCTTT 2319
Query 2321 TTAGTAAAAGC 2331
|||||| ||||
Sbjct 2320 TTAGTAGAAGC 2330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89778707465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5