BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53486.4

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495421 jgi|Araly1|495421|fgenesh2_kg.8__1237__AT5G53486.1         520    7e-147


> Ahg495421 jgi|Araly1|495421|fgenesh2_kg.8__1237__AT5G53486.1
Length=531

 Score =  520 bits (281),  Expect = 7e-147
 Identities = 391/439 (89%), Gaps = 27/439 (6%)
 Strand=Plus/Plus

Query  124  GCCATAGTGGAAGGCTCTATCCAGCTC-GACGGTGCGAAGATGCATGAGAGTTCCATGCT  182
            ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct  92   GCCATAGTGGAAGGCTCTATCCAGCTCGGA-GGTGCGAAGATGCATGAGAGTTCCATGCT  150

Query  183  TTACAAGAGTGAGGAGGTGGGTGTGAAGAAGATGGGTCATAGGAAGTTGATGTTCCACTC  242
            ||||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||||
Sbjct  151  TTACAAGAGTGAGGAAGTGGAAGTGAAGAAGATGAGTCATAGGAAGTTGATGTTCCACTC  210

Query  243  GACAGCGGACTACGACGACGCAGGACCCAACCCTAAACACGACCCAAGGAGAAGGCCCGG  302
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  211  GACAGCGGACTACGACGACGCAGGACCCAACCCTAAACATGACCCAAGGAGAAGGCCCGG  270

Query  303  AGGCAAGGGTTGAATCATCAACACAGAACTATCTCTGTCATtatatatatagtagcatat  362
             ||||||||||||||||||||||| ||  ||  |  | | | ||||||| |||| |||  
Sbjct  271  GGGCAAGGGTTGAATCATCAACAC-GA--TAG-TA-GCC-T-ATATATA-AGTA-CAT--  319

Query  363  atataagcacatgcactaatatctatatatcatatatgaat--atgtatgtgatgtatCC  420
                  ||||  | | || ||| ||||||||||||||||||  |||||||||||||||||
Sbjct  320  ------GCAC--GAA-TA-TATATATATATCATATATGAATGTATGTATGTGATGTATCC  369

Query  421  TCCATT-CTGACTCTTTTTGTTTGAGGATGAGCTCAGTGTAAAATACCCTTCGGAAACCC  479
            |||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
Sbjct  370  TCCATTTCTGACTCTTTTTGTTTGAGGATGAGATCAGTGTACAATACCCTCCGGAAACAC  429

Query  480  GCTAGTGAAAGGATTAGTGTCTAATAACAAGACATAATAAATCCTTATTTATTATCATCT  539
            | | ||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||
Sbjct  430  GTTCGTGAAAGGATTAGTGTCTAGTGACAAGAGATACTAAATCCTTATTTATTATCATCT  489

Query  540  TATTTCATTGACATATATA  558
             ||||||||||||||||||
Sbjct  490  -ATTTCATTGACATATATA  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22797504366


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5