BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53490.3
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495426 jgi|Araly1|495426|fgenesh2_kg.8__1242__AT5G53490.1 1118 0.0
> Ahg495426 jgi|Araly1|495426|fgenesh2_kg.8__1242__AT5G53490.1
Length=893
Score = 1118 bits (605), Expect = 0.0
Identities = 731/792 (92%), Gaps = 8/792 (1%)
Strand=Plus/Plus
Query 160 ATGTTCTCAGCAGGAGAAAACAGAGAAAATGGTGAAGGTGTAAAGAAGAGTCTCTTTCCT 219
|||||||| || ||||||||||||||||||||||||||| ||||||||| | || ||
Sbjct 105 ATGTTCTCCGCTGGAGAAAACAGAGAAAATGGTGAAGGTACCAAGAAGAGTTTGTTGCCG 164
Query 220 CTTAAGGAGCTTGGATCTATCGCTTGCGCAGCTCTCTGTGCTTGCACTCTTACAATAGCT 279
| |||||||||||| |||||||||||| ||||| |||||||||||||||| || |||
Sbjct 165 ATAAAGGAGCTTGGAAGTATCGCTTGCGCTGCTCTTTGTGCTTGCACTCTTATTATGGCT 224
Query 280 TCTCCTGTTATTGCTGCTAACCAGAGACTTCCTCCGTTATCAACAGAACCAGACCGGTGT 339
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 225 TCTCCTGTAATTGCTGCTAACCAGAGACTTCCTCCACTATCAACAGAACCAGACCGGTGT 284
Query 340 GAAAAAGCATTTGTTGGTAACACGATAGGTCAAGCAAATGGTGTCTATGACAAACCACTG 399
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 285 GAAAAAGCATTCGTTGGTAACACGATAGGTCAAGCAAATGGGGTTTATGACAAACCGCTA 344
Query 400 GATCTTAGGTTCTGTGATTACACAAATGATCAAACTAATCTCAAAGGCAAGACTCTCTCT 459
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 345 GATCTTAGGTTCTGTGATTACACAAACGATCAGACTAATCTCAAAGGCAAGACTCTCTCT 404
Query 460 GCAGCCTTGATGGTTGGGGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCA 519
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCAGCCTTGATGGTAGGAGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCA 464
Query 520 AAAGCTTATGCTGTAGAAGCAAGCTTTAAAGGGGTGAATTTCACTAATGCTGTTATCGAT 579
||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 465 AAAGCTTATGCCGTTGAAGCAAGCTTTAAGGGGGTGAATTTCACGAATGCTGTTATCGAT 524
Query 580 CGGGTGAATTTCGGGAAATCGAATCTGAAAGGTGCGGTGTTTAGGAACACGGTATTATCC 639
||||||||||| |||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 525 CGGGTGAATTTTGGGAAATCGAATTTGAAAGGTGCGGTGTTCCGGAACACGGTGTTATCC 584
Query 640 GGTTCGACATTTGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGT 699
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGTTCGACATTCGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGT 644
Query 700 TACATAGACCTTCAGAAAATATGTAGGAATGAGTCCATAAACGAAGAAGGAAGACTTGTG 759
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 645 TACATAGACCTTCAGAAAATATGTAGGAACGAGTCGATAAACGAAGAAGGAAGACTTGTG 704
Query 760 TTGGGATGCCGATAGAGAAGAGAGAAGGTTTTGATTTGAATGTATTATATATGTAAGATT 819
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 705 TTGGGTTGCCGATAGAGAAGAGAGAAAGATTTGATTTGAATGTATTATATATGTAAGATT 764
Query 820 TAAGATTTGTTGACACAAAGATGTATGAAAC----TAAGTAAAGGTTGAAGGATAGGAGT 875
| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 765 TGAGATTTG---ACACAAAGATGTATGAAACAAAGTAAGTAAAGGTTCAAGGATAGGAGT 821
Query 876 CAAGAGAGTTATGAGAGGTTGTATAATCGA-TTCTTGTAAATTCTGTAACCAAACAAAAG 934
| ||||||||||||| |||||| ||||| | ||||||||||||||||| |||||||||||
Sbjct 822 CGAGAGAGTTATGAGCGGTTGTGTAATCAAATTCTTGTAAATTCTGTAGCCAAACAAAAG 881
Query 935 GCGTTTTCTCTG 946
|| |||||||||
Sbjct 882 GCATTTTCTCTG 893
Score = 148 bits (80), Expect = 6e-35
Identities = 97/105 (92%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 14 ACACTTCCATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCAAATCTCTTCACCGTTTT 73
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ACACTCCCATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCATTTCTCTTCACCGTTTT 60
Query 74 TCTCTGT-AAACCTCCGCCGTGAGCCTAGATCTTTAGTAACAGTA 117
|||| || |||| |||||| |||||| ||||||||||||||||||
Sbjct 61 TCTCCGTTAAAC-TCCGCCATGAGCCGAGATCTTTAGTAACAGTA 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5