BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53500.1
Length=3080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495427 jgi|Araly1|495427|fgenesh2_kg.8__1243__AT5G53500.1 4416 0.0
> Ahg495427 jgi|Araly1|495427|fgenesh2_kg.8__1243__AT5G53500.1
Length=2999
Score = 4416 bits (2391), Expect = 0.0
Identities = 2740/2904 (94%), Gaps = 41/2904 (1%)
Strand=Plus/Plus
Query 184 tttagactctct-ACCACTGTTGCTACTTCTTTGGGATGTGTTTGTTCCAATTTCGAAGA 242
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTAGACTCTCTAACCAC---AGCTACTTCTTTGGGATGTGTTTGTTCCAATTTCGAAGA 176
Query 243 AACCTCGTGAAGACGAACCAACCCATTTTGCCTTGTAGGTTGCTTGTTTGGAAGCAAAAC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AACCTCGTGAAGACGAACCAACCCATTTTGCCTTGTAGGTTGCTTGTTTGGAAGCAAAAC 236
Query 303 TGGCAGTTGGGGAAATTCCTCTTTTGAGAGAAAAGCATTCTTCTTCTTTAAGCTCTGTTT 362
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 TGGCAGTTGGGGAAATTCCTCTTTTGAGAGAAAAGCA---TTCTTCTTTAAGCTCTGTTT 293
Query 363 CATGGATTGACAATAGCTCAAGGAATAATGGATTACTTATCTCAAGAGGAAGATTTGCAG 422
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 294 CATGGATTGACAATTGCTCAAGGAATAATGGATTACTTGTCTCAAGAGGAAGATTTGCAG 353
Query 423 TTTTTCGATGCTAACGAAGAGATGATGGCATTGAATCCAAGTGGTTTTGGATTT-GATGT 481
||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct 354 TTTTTCGATGCCAACGAAGAGATGATGGCATCGAATCCAAGTGGTTTTGG-TTTCGATGT 412
Query 482 ATGGAATGATTCACCTGGAAGTGTTGTGGAGCGGCGGAGGAAGTTCTTGGAGTGGATGGG 541
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 413 GTGGAATGATTCACCTGGAAGTGTTGTGGAGAGGCGGAGGAAGTTCTTGGAGTGGATGGG 472
Query 542 AGTTGAAGAAGAAGGGCGTGTTGAGACGAAGGATTCGGTTTCTGGAAGTAGTGTGGAGTC 601
|||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||||||
Sbjct 473 AGTTGAAGAAGAAGATCGTGTTGAGTCGAAGGGTTCGGTCTCTGTAAGTAGTGTGGAGT- 531
Query 602 TT-GTTTTGATGGAGGTGAAGAGAATTCTGTTGAAGCTGAGGAGAGATCTGGAGAG-TGC 659
|| ||||||||| || |||||||| |||| |||||||||||||||||||||||| | |
Sbjct 532 TTGGTTTTGATGAAGCTGAAGAGATTTCTATTGAAGCTGAGGAGAGATCTGGAG-GTTTT 590
Query 660 AGCAGTTCTTCTAGTGAGGTTTCATTGTCTGGTTCAAGCGTTGAAGTTTCCGAGGAATTG 719
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 591 AGCAGTTCTTCTAGTCAAGTTTCGTTGTCTGGTTCAAGCGTTGAAGTTTCCGAGGAATTG 650
Query 720 TCTTTGAGAGTAGACAGAAATGTGGGTGGATGTGATGTGACGAGAAGACAAAGCTCTTCA 779
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 651 TCTTTGAGAGTAGACAGAAATGTGGGTGGGTGTGATGTAACGAGAAGGCAAAGCTCTTCG 710
Query 780 ATGGCGTCATGTTCTAG-TTCCAGATATTGCCAAGTGAAGGAAACCGAGAAGCAGAGGAA 838
||||| ||||||||| | |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 711 ATGGCATCATGTTCT-GATTCCAGGTATTGCGAAGTGAAGGAAACCGAGAAGCAGAGGAA 769
Query 839 TATCGCAGGGCTAGTCACGAGTTTTAAGAAGGGATGGTTATCGAGGCTTCGGTCTATGGG 898
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 TATCGCAGGGCTAGTCACGAGGTTTAAGAAGGGATGGTTATCGAGGCTTCGGTCTATGGG 829
Query 899 ATGTACCGCGGATACAAATATCGAATCTGGTGGTAGAATGAGAGCTTCTTCTGGTTATGG 958
||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||
Sbjct 830 CTGTACCGCGGATACAAAGATTGAATCTGGTGGTAGAATCAGAGCTTCTTTTGGTTATGG 889
Query 959 TGATGTGATTTCAAGAGTTAAGGTTAAGCATTGTAAGAAGCAGGCAAAGGAGCTTTCAGC 1018
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 890 TGATGTGATTTCAAGAGTTAAGGTTAAGCATTGTAAGAAACAGGCAAAGGAGCTTTCAGC 949
Query 1019 TCTTTATCAGAGTCAAGACATTAAAGCTCATGATGGTGCCATCTTGGCGATGAAATTTAG 1078
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 950 TCTTTATCAGAGTCAAGACATTAAAGCTCATGATGGTGCCATCTTGGCTATGAAATTTAG 1009
Query 1079 CAACGATGGGAAGTTTCTTGCAAGCTCTGGTGAAGATGGGATTGTGAGGGTGTGGAAAGT 1138
| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1010 CGGCGATGGGAAGTTTCTTGCAAGCTCTGGTGAAGATGGGATTGTGCGTGTGTGGAAAGT 1069
Query 1139 CGTTGAGGATAAGAAATCTAGACTACGAAGGGATTGCCTTAACGAGATAGATCCTTCGTG 1198
||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1070 CGTGGAGGATAGGAGATCTAGACTACGAAGGGATTGCCTTAACGAGATAGACCCTTCGTG 1129
Query 1199 TATGTACTTTGAGGTAAATGATCTTTCTCAGTTGAAACCAGTTTTGGTAAATGAGGAGAA 1258
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1130 TATATACTTTGAGGTAAATGATCTTTCTCAGTTGAAACCGGTTTTGGTGAATGAGGAGAA 1189
Query 1259 ACCAAAGAAGACTACAGAAAGTTTCAGGAAAACATCTGATTCAGCCTGTGTTGTCTTCCC 1318
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1190 ACCAAAGAAGACTACAGAAAGTTTCAGGAAAACATCTGATTCAGCCTGCGTTGTCTTCCC 1249
Query 1319 TCCTAAAGTTTTTCGGATTATGGAAAAACCATTATATGAATTCCGTGGGCACACGGGTGA 1378
|||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1250 TCCTAAAGTTTTCCGGATAATGGAGAAACCATTATATGAATTCCGCGGGCACACGGGTGA 1309
Query 1379 AGTCTTGGACATCTCATGGTCAAAAGATAATTAT-TTGCTTTCGGCGTCAATGGATAAAA 1437
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1310 AGTCTTGGACATCTCATGGTCAAAAGATAATTATCTT-CTTTCGGCGTCAATGGATAAAA 1368
Query 1438 CTGTCCGCCTTTGGAAAGTTGGTAGCAATGATTGTCTTGGAGTTTTCGCTCACAATAGTT 1497
||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 1369 CTGTCCGGCTTTGGAAAGTCGGTAGCAATGCTTGTCTTGGAGTTTTCGTTCACAATAGTT 1428
Query 1498 ATGTAACCTCTGTTCAGTTCAACCCGGTAAATGAGAATTATTTCATGAGTGGTTCAATTG 1557
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1429 ATGTAACCTCTGTTCAGTTCAACCCGGTAAATGAGAATTACTTCATGAGTGGTTCAATTG 1488
Query 1558 ATGGAAAGGTTCGAATTTGGAACATTTCCGGTTGCAGCGTTGTTGATTGGGCAGATCTCA 1617
||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1489 ATGGAAAAGTTCGAATCTGGAACATTTCTGGTTGCAACGTTGTTGATTGGGCAGATCTCA 1548
Query 1618 AAGACATTATATCGGCAGTGTGTTATCGTCCGGATGGACAAGGTGGAATCATCGGTTCTC 1677
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1549 AAGACATTATATCGGCAGTGTGTTATCGTCCGGATGGACAAGGAGGAATTATCGGTTCTC 1608
Query 1678 TGAACGGGAGTTGCAGATTCTTTAACATGTCTGGAGAATTTTTAGAACTGGACTCTCAGA 1737
||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1609 TGACCGGAAGTTGTAGATTCTTTAACATGTCTGGAGAATATTTGGAACTGGACTCTCAGA 1668
Query 1738 TACATTTGCATAACAAAAAGAAGTCTTCAAATAAACGCATAACTGGTTTTCAGTTCTTAC 1797
||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||
Sbjct 1669 TACATTTGCATAACAAAAAGAAGTCTTCAAATAAAAGAATAACTGGGTTTCAGTTTTTAC 1728
Query 1798 CACAAGAACCG-ACTAAAGTCCTGGTTGTTTCCGCGGATTCCAAAGTCAGAATTCTCCAA 1856
||||||| ||| || |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1729 CACAAGACCCGAAC-AAAGTCCTGGTTGTTTCCGCCGATTCCAAAGTCAGAATTATCCAA 1787
Query 1857 GGCAACAATGTCGTCAGAAAATACAAAGGCGTTTGCAAGACGAGAAGCCTCACATCAGCA 1916
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GGCAACAATGTCGTCGGAAAATACAAAGGCGTTTGCAAGACGAGAAGCCTCACATCAGCG 1847
Query 1917 TCTCTCACATCTGATGGAAAACACATTGTTTCAGCTTGTGAGGACTCCAATGTATATATA 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 TCTCTCACATCTGATGGAAAACACATTGTTTCAGCTTGTGAGGACTCCAATGTATATATA 1907
Query 1977 TGGAGCAATGATGAGGAATCAGAAACCAAAAAGATTCGATCTTTTGAACGTTTCTCCGCC 2036
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1908 TGGAGTAATGATGAGGAATCAGAAACCAAAAAGATTCGATCTTTTGAACGTTTCTCCACC 1967
Query 2037 AATGCATCAGTTGCAGCAACATGGTGTGGATTCTCAGATCACAACACAACTCTCCCGTTT 2096
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1968 AATGCATCCGTTGCAGCCACCTGGTGTGGATTCTCAGATCACAACACAACTCTCCCGTTT 2027
Query 2097 TCTTCTCCATCATGCT-TATCTCACAACGAAGGATTTGTCCCCGGATCAATATCCAAAGG 2155
|||||||| || || | |||||| || |||||||||||||||||||||||||||||||||
Sbjct 2028 TCTTCTCCCTCTTG-TCTATCTCTCAGCGAAGGATTTGTCCCCGGATCAATATCCAAAGG 2086
Query 2156 GAGTGCGACATGGCCAGAGGAAAACCTACCCGCAAATCCTCTGTCCACATCCGCGATGAA 2215
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2087 AAGCGCGACATGGCCAGAGGAAAACCTACCCGCAAATCCACTGTCTACATCCGCGATGAA 2146
Query 2216 TGCATCTCATTACAAGTTTCTCAAGTCCTCTTACCAGAGAGCATCCAGCTCTCTATCTTG 2275
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2147 TGCATCTCATTACAAGTTTCTCAAGTCCTCTTACCAGAGAGCATCTAGCTCTCTATCTTG 2206
Query 2276 GGGTATGGTCATAGTCACAGGTGGTTGGGATGGACAGATAAGAACATTTCAGAACTACGG 2335
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 2207 GGGTATGGTCATAGTCACAGGTGGTTGGGATGGACGGATCAGAACATTTCAGAACTATGG 2266
Query 2336 GTTGCCTGTGACTACTT-GA-AAAAACCTGTTTCGTTTTCCCAACTTTGGAAAACAAATC 2393
|||||||||||||||| || ||||| | |||||||||||| ||||||||||||||||||
Sbjct 2267 CTTGCCTGTGACTACTTAGAGAAAAAGCGGTTTCGTTTTCCTAACTTTGGAAAACAAATC 2326
Query 2394 AGATGCCATTGTTCCTATCTTGATAGGCACAAGCACATGGTTCTAGCAGATCATGAAGCA 2453
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2327 AGATGCCATTGTTCCTATCTTGATAGGCACAAGCACATGGTTCTGGCAGATCATGAAGCT 2386
Query 2454 ATGGTGGGTCCAAAACCAGATCCACTCTAAGATCTCTGGAGATACATCAATTAGTCAAAA 2513
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2387 ATGGTGGGTCCAAAACCAGATCCACTCTTAGATCTCTGGAGATACATCAATTAGTCAAAA 2446
Query 2514 AGTGATACAATTCTGTTACTTCTCCTCAAGATTTATCATCATCTTGTAGAAAAATCTTTG 2573
|||||| ||||||||||||||||| |||||| || | ||||||||||||||||||||||
Sbjct 2447 AGTGATTCAATTCTGTTACTTCTCTTCAAGA-TT-T-ATCATCTTGTAGAAAAATCTTTC 2503
Query 2574 AAGAAGTGGTCAGTGGGAGAG-GTTTCAATCGGTTGATGTAGACGCAGGAGATGATAAGG 2632
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2504 AAGAAGTGGTCAGTGGGAGAGATTTTCAATCGGTTGATGTAGACGCAGGAGATGATAAGG 2563
Query 2633 AACAGATGTTTCTGTTTTTGGCAATTAGTGGCGGTTGGAGATGGTTTTTAGACAGTACGG 2692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2564 AACAGATGTTTCTGTTTTTGGCAATTAGTGGCGGTTGGAGATGGTTTTTAGACAGTACGG 2623
Query 2693 ATTTGTCTGAAAATTGACAGGCGATTATTGTAGGGTCCAAAACCAAGAGAGGCAAAGTAG 2752
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2624 ATTTGTCTGAAAATTGACAGGCGATTATTGTAGGGTCCAAAACCAAGAG-G-CAAAGTAG 2681
Query 2753 TGATCATGTAAAGGAGTGGTTGAAGGAGAAAGATGTTGACGTTACTTCCACAAGAAAGAT 2812
|||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2682 TGATCATGGAAAGTAGTGGTTGAAGGAGAAAGATGTTGACGTTACTTCCCCAAGAAAGAT 2741
Query 2813 CTTCCAATGCCTTCTCCTAAGATCCTTTTTTCAATTTAGGATTTTGTATT-GATAAATTT 2871
||||||||||||||||||||||||||||||| || ||||||||| ||| ||| |||||
Sbjct 2742 CTTCCAATGCCTTCTCCTAAGATCCTTTTTT---TT-AGGATTTTG-ATTTGATTAATTT 2796
Query 2872 -CTAACGTAGTGATTATTGATTCGTTGATTATGTGTAATTTGAGTCTCTAACGTGTAGAT 2930
|||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2797 TCTAACGTAGTGATTCTTGATTCGTTGATTCTGTGTAGTTTGAGTCTCTAACGTGTAGAT 2856
Query 2931 GAGTTTGTTATATAGCTTTGTTCTAGATTTGATTTCCACTTATTAT-A-A-GAGACAAAT 2987
|| ||| ||||||||||||||| ||||||||||| ||||||||||| | | |||||||||
Sbjct 2857 GACTTTATTATATAGCTTTGTTTTAGATTTGATTCCCACTTATTATTATAAGAGACAAAT 2916
Query 2988 CAATAGATTGTAAGAGCTCTCCACCTCAAAGAGAGGCTCCGGAG-ATTTGTAGCTGTAAA 3046
|| |||||||||||| |||||||||||||||||||||||||| | ||| |||| ||||||
Sbjct 2917 CATTAGATTGTAAGAACTCTCCACCTCAAAGAGAGGCTCCGGGGTATT-GTAGTTGTAAA 2975
Query 3047 TTTTGTACAGAGTAAAACTTGTTT 3070
||||||| | ||||||||||||||
Sbjct 2976 TTTTGTATACAGTAAAACTTGTTT 2999
Score = 134 bits (72), Expect = 5e-30
Identities = 116/134 (87%), Gaps = 16/134 (12%)
Strand=Plus/Plus
Query 11 TCTATTCCCTCCGGACAATCCCATCTTCTTCTTCTT---CCTTATTGTCTCTTTCTTCAC 67
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TCTATTCCCTCCGGACAATCCCATCTTCTTCTTCTTCCCCCTTATTGTCTCTTTCTTCAC 60
Query 68 AGATTTCAATAAAAATCctttgatccttcttctcttctcttttccctttcaataataaaa 127
||| ||||||||||||| || | | ||||||||||||| | ||| ||||||||||
Sbjct 61 AGACTTCAATAAAAATC-TT----C-T-CTTCTCTTCTCTTCT---TTT-AATAATAAAA 109
Query 128 -gtttctctctttt 140
||| |||||||||
Sbjct 110 AGTT-CTCTCTTTT 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116327608230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5