BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53520.1
Length=2202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916994 jgi|Araly1|916994|Al_scaffold_0008_1745 3533 0.0
Ahg334275 jgi|Araly1|334275|fgenesh1_pg.C_scaffold_1000840 104 3e-21
> Ahg916994 jgi|Araly1|916994|Al_scaffold_0008_1745
Length=2220
Score = 3533 bits (1913), Expect = 0.0
Identities = 2082/2166 (96%), Gaps = 2/2166 (0%)
Strand=Plus/Plus
Query 38 GCGACGATGAGATAAGTATAGTTCCACAAGTGGAACTAACGGTGCCCAAAACCGACGATC 97
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 56 GCGACAATGAGATAAGTGTAGTTCCACAAGTGGAACTAACTGTGCCCAAAACCGACGATC 115
Query 98 CAACTTCACCGACGGTTACGTTTAGGATGTGGGTTCTTGGCATAACCGCTTGTGTTCTCT 157
||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
Sbjct 116 CAACTTCACCGACGGTTACATTTAGGATGTGGGTTCTTGGCATTAGCGCTTGTGTTCTTT 175
Query 158 TGTCATTTCTTAACCAGTTTTTCTGGTACAGAACCAATCCTTTGACCATCTCCTCTGTTT 217
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 176 TGTCATTTCTAAACCAGTTTTTCTGGTACAGAACCAATCCTTTGTCCATCTCCTCTGTTT 235
Query 218 CGGCTCAGATTGCTGTTGTTCCCATTGGTCATCTCATGGCTAAAGTTCTTCCCACAAGGA 277
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 CGGCTCAGATTGCTGTTGTTCCCATTGGTCATCTCATGGCTAGAGTTCTTCCCACAAGGA 295
Query 278 GATTCTTCGAAGGGACGAGGTGGTCTTTCACGATGAATCCTGGTCCCTTTAGCACCAAGG 337
||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 296 GATTCTTCGAAGGGACGAGGTGGTCTTTCACAATGAATCCTGGTCCGTTTAGTACCAAAG 355
Query 338 AACATGTTCTTATAACTGTGTTTGCAAACTCAGGCTCTGGGGCTGTTTACGCTACTCATA 397
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 356 AACATGTTCTTATAACTGTGTTTGCAAACTCAGGCTCTGGGTCTGTATACGCTAGTCATA 415
Query 398 TTCTTAGTGCTGTTAAGCTTTATTACAAGAGAAGGCTTGATTTCTTACCCGCTTTGCTCG 457
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 TTCTTAGTGCTGTTAAGCTTTATTACAAGAGAAGGCTTGATTTCTTACCTGCTTTGCTCG 475
Query 458 TTATGATCACCACTCAGGTATTGGGATTTGGTTGGGCTGGTTTGTATAGGAAACATTTAG 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTATGATCACCACTCAGGTATTGGGATTTGGTTGGGCTGGTTTGTATAGGAAACATTTAG 535
Query 518 TTGAGCCAGGTGAAATGTGGTGGCCAAGCAATCTCGTTCAAGTGTCTCTCTTCAGAGCAT 577
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 TTGATCCTGGTGAAATGTGGTGGCCAAGCAATCTTGTTCAAGTGTCTCTCTTCAGAGCAT 595
Query 578 TGCATGAGAAAGAGAACAAATCGAAATGGGGAATTAGTCGAAATCAGTTCTTTGTCATCA 637
|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 596 TGCACGAGAAAGAGAACAAATCAAAATGGGGAATTAGTAGAAATCAGTTCTTTGTCATCA 655
Query 638 CTCTCATCACTAGCTTCTCCTATTATCTCCTACCTGGTTATCTCTTCACGGTCTTAACCA 697
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGCTCATCACTAGCTTCTCCTATTATCTCCTACCTGGTTATCTCTTCACGGTCTTAACCA 715
Query 698 CCGTCTCTTGGTTATGTTGGATTAGCCCTAAATCGATTCTAGTAAACCAGCTTGGTTCAG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCGTCTCTTGGTTATGTTGGATTAGCCCTAAATCGATTCTAGTAAACCAGCTTGGTTCAG 775
Query 758 GGTCAGCAGGTCTTGGTATCGGTTCCTTTGGTCTGGACTGGTCAACCATCGCGTCATACC 817
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 776 GGTCAGCTGGTCTAGGTATTGGTTCCTTTGGTCTGGACTGGTCAACCATCGCGTCATATC 835
Query 818 TTGGAAGTCCACTCGCTAGCCCATTCTTTGCCTCTGCAAATATTGCGGCCGGGTTCTTTC 877
||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 836 TTGGAAGCCCACTCGCTAGCCCATTCTTTGCCTCAGCAAATATTGCGGTTGGGTTCTTTC 895
Query 878 TTGTGATGTACGTAATCACACCTCTCTGTTACTATCTTGATTTGTACAACGCCAAAACCT 937
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 896 TTGTGATGTACGTAATCACACCTCTCTGTTACTATCTAGATTTCTACAATGCCAAAACCT 955
Query 938 TCCCAATCTACTCCGGTAAACTCTTTGTAGCCAGTGGGAAAGAATACAAAGTAACGAGCA 997
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 956 TCCCAATCTACTCCGGTAAACTCTTTGTAGCCAGTGGGAAGGAATACAATGTAACGAGCA 1015
Query 998 TCATCGATGCCAATTTCCGCCTGGATCGTCAGGCTTACGCAGAGACCGGACCAGTCCACA 1057
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1016 TCATCGATGCCAATTTCCGCCTCGATCGTAAGGCTTACGCAGAGACCGGACCAGTCCACA 1075
Query 1058 TGAGCACTTTCTTTGCCGTGACCTATGGACTAGG-TTTCGCGACCTTGTCTGCTAGTATT 1116
|||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||
Sbjct 1076 TGAGCACTTTCTTTGCCGTGACTTATGGACTCGGCTTT-GCGACCTTGTCTGCTAGTATT 1134
Query 1117 TTCCATGTCCTGATTTTCAACGGCAAAGATCTCTGGACTCAAACCAGAGGAGCGTTTGGA 1176
||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct 1135 GTCCATGTCCTGCTTTTCAACGGCAAAGATCTTTGGACTCAAACCAAAGGAGCGTTTCGA 1194
Query 1177 AAAAACAAGAAAATGGATATACATACAAAGATCATGAAGAGGAATTATAAAGAAGTTCCT 1236
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1195 AAAAACAAGAAAATGGATATACATACAAAGATCATGAAGAGGAATTACAAAGAAGTTCCT 1254
Query 1237 CTCTGGTGGTTCCTTTCGATTTTCGCGGTGAATCTTGCAGTTATTGTCTTCATATGTATT 1296
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1255 CTCTGGTGGTTTCTTTCGATTTTCGCCGTGAATCTTGCAGTTATTGTCTTCATATGTATT 1314
Query 1297 TACTATAAGACACAGATTCAGCTTCCATGGTGGGGAGCTTTCTTGGCTTGTTTGATAGCT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TACTATAAGACACAGATTCAGCTTCCATGGTGGGGAGCTTTCTTGGCTTGTTTGATAGCT 1374
Query 1357 ATCTTCTTCACTCCTCTCGTTGGTGTGATCATGGCCACTACTAACCAGGCTCCGGGTCTG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ATCTTCTTCACTCCTCTCGTTGGTGTGATCATGGCCACTACTAACCAGGCTCCGGGTCTG 1434
Query 1417 AACATTATCACGGAGTACATAATTGGATATGCATATCCAGAGAGACCAGTTGCTAACATA 1476
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1435 AACATTATCACGGAATACATAATTGGGTATGCATATCCAGAGAGACCAGTTGCTAACATA 1494
Query 1477 TGCTTCAAGACTTACGGATACATCAGCATGTCTCAATCTTTGACTTTCCTCTCTGATTTA 1536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TGCTTCAAGACTTACGGATACATCAGCATGTCTCAATCTTTGACTTTCCTCTCTGATTTG 1554
Query 1537 AAGCTTGGAACTTACATGAAGATCCCACCAAGAACCATGTTCATGGCACAGGTTGTGGGC 1596
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1555 AAGCTTGGAACTTACATGAAGATCCCACCAAGAACCATGTTTATGGCACAGGTTGTGGGC 1614
Query 1597 ACTTTAGTTGCAGTTATCGCTTACGCAGGCACGGCTTGGTGGCTAATGGCTGAAATCCCA 1656
|||||||| ||||| |||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1615 ACTTTAGTAGCAGTCATCGTTTACGCAATCACAGCTTGGTGGCTAATGGCTGAAATCCCA 1674
Query 1657 AATCTCTGCGACACTAATCTGCTTCCACCGGGAAGTCAATGGACTTGTCCATCGGATCGA 1716
|||||||| || ||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1675 AATCTCTGTGATACTTCTCTGCTTCCACCAGGAAGTCAGTGGACTTGTCCATCGGATCGA 1734
Query 1717 GTCTTCTTCGACGCATCAGTGATTTGGGGACTAGTAGGACCAAGAAGAATGTTTGGTGAT 1776
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1735 GTCTTCTTCGACGCATCAGTGATCTGGGGACTTGTAGGACCAAGAAGAATGTTTGGTGAT 1794
Query 1777 CTTGGAGAATACTCGAACATAAACTGGTTCTTCGTAGGAGGTGCAATAGCTCCAGCATTG 1836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 CTTGGAGAATACTCAAACATAAACTGGTTCTTCGTAGGAGGTGCAATAGCTCCAGCATTG 1854
Query 1837 GTATACTTAGCCTCAAGACTCTTCCCAAACAAGAAATGGATCTCAGACATTCACATCCCT 1896
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1855 GTCTACTTAGCCACAAGACTCTTCCCAAACAAGAAATGGATCTCAAACATTCACATCCCT 1914
Query 1897 GTTCTGATTGGAGCCACAGCTATAATGCCACCAGCTTCTGCGGTGAACTTCACGAGCTGG 1956
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1915 GTTCTGGTTGGAGCCACAGCTATAATGCCACCAGCTTCTGCGGTTAACTTCACGAGCTGG 1974
Query 1957 CTCGTTATGGCGTTTGTGTTTGGACATTTCGTGTTTAAGTACAGAAGAGAATGGTGGCAG 2016
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1975 CTCGTTATGGCGTTTGTGTTTGGACATTTCGTGTTCAAGTACAGAAGAGAATGGTGGCAG 2034
Query 2017 CGATATAACTATGTTCTGTCTGGAGGAATGGATGCAGGAACTGGATTCATGTCAGTGCTT 2076
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2035 AGATATAACTATGTTCTGTCTGGAGGAATGGATGCAGGAACTGGATTCATGTCTGTGCTT 2094
Query 2077 TTGTTTCTTGCGTTGCAACGTAGTGAGATTGCGATTGATTGGTGGGGAAATTCTGGAGAA 2136
||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2095 TTGTTTCTTACGCTGCAACGTAGTGAGATTGCTATTGATTGGTGGGGAAATTCTGGTGAA 2154
Query 2137 GGTTGTCCTGTTGCTAAATGTCCAACTGCTAAAGGTGTTGTTGTTCATGGTTGTCCTGTT 2196
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 GGTTGTGCTGTTGCTAAATGTCCAACTGCTAAAGGTGTTGTTGTTCATGGTTGTCCTGTT 2214
Query 2197 TTCTAA 2202
||||||
Sbjct 2215 TTCTAA 2220
> Ahg334275 jgi|Araly1|334275|fgenesh1_pg.C_scaffold_1000840
Length=2205
Score = 104 bits (56), Expect = 3e-21
Identities = 109/132 (83%), Gaps = 14/132 (11%)
Strand=Plus/Plus
Query 1690 AGTCAATGGACTTGTCCATCG-GATC-GAGTCTTCTTCGACGCATCAGTGATTTGGGGAC 1747
|||| |||||| |||||| | || | ||||||||||||||||||||||||||||||||
Sbjct 1690 AGTCCATGGACATGTCCA-AGTGA-CAGAGTCTTCTTCGACGCATCAGTGATTTGGGGAT 1747
Query 1748 TAGTAGGACC-AAGAAGAATGTTTGGT-GATCTTGGAGAA-TACTC-GAACAT-AAACTG 1802
|||||||||| |||| |||| |||||| | || ||| || ||| | | ||| ||||||
Sbjct 1748 TAGTAGGACCCAAGA-GAATCTTTGGTCGG-CTAGGA-AACTACCCTG--CATTAAACTG 1802
Query 1803 GTTCTTCGTAGG 1814
||||||| ||||
Sbjct 1803 GTTCTTCTTAGG 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82884373120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5