BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53530.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331709 jgi|Araly1|331709|fgenesh1_pm.C_scaffold_8001052 1580 0.0
Ahg945271 jgi|Araly1|945271|scaffold_701500.1 1086 0.0
> Ahg331709 jgi|Araly1|331709|fgenesh1_pm.C_scaffold_8001052
Length=909
Score = 1580 bits (855), Expect = 0.0
Identities = 892/910 (98%), Gaps = 2/910 (0%)
Strand=Plus/Plus
Query 169 ATGAATTATCTTCTTGGAGCTTTCAAGCCAGCATGTAATATTTCAATCACATTTACTGAT 228
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGAATTATCTTCTTGGAGCTTTCAAGCCGGCATGTAATATTTCAATCACATTCACTGAT 60
Query 229 GGGAAAAACCGTAAACAGGTACCCACTAAGAAAGATAATGGACAAATAGTTATGAATCCA 288
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 61 GGGAAAAACCGTAAACAGGTACCCATTAAGAAAGATAATGGACAAATAGTTATGACTCCA 120
Query 289 CTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAAA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAAA 180
Query 349 AAAGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGAC 408
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGTGGAGCACAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGAC 240
Query 409 AGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTGATGTACCTGGAGAAATA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTGATGTACCTGGGGAAATA 300
Query 469 TATGAAAGAAAGACATACCCTTTTGAATTTTCGAGCGTTGAGATGCCATATGAGACATAC 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATGAAAGAAAGACATACCCTTTTGAATTTTCGAGCGTTGAGATGCCATATGAGACATAC 360
Query 529 AATGGCGTGAACGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTATGCT 588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATGGCGTGAATGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTATGCT 420
Query 589 GGAAGCATCGTGGAATACCAGGACTTTGTGGTCCGTAACTATGTTCCGCT-TCCTCCAAT 647
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 421 GGAAGCATCGTGGAATACCAGGACTTTGTGGTCCGTAACTATGTTCCG-TCTCCTCCAAT 479
Query 648 CAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGTCTGCATATCGAGTTTGAGTA 707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGCCTGCATATCGAGTTTGAGTA 539
Query 708 CAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTTCTGGT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTTCTGGT 599
Query 768 GAGAATCAAGATAAAGAATATGGATCTTGAGATAAGACGGCGAGAATCAACTGGAGCAGG 827
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 GAGAATCAAGATAAAGAATATGGATCTTGAGATCAGACGGCGAGAATCAACTGGAGCAGG 659
Query 828 AGCTAATACTCACGTCGAAACAGAAACACTAGCCAAATTTGAGTTAATGGATGGTGCTCC 887
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCTAATACTCACGTCGAGACAGAAACACTAGCCAAATTTGAGTTAATGGATGGTGCTCC 719
Query 888 AGTTAGAGGCGAATCGATACCTGTAAGAGTGTTCTTGACACCATACGATCTGACACCAAC 947
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 AGTTAGAGGCGAATCGATACCTGTAAGAGTGTTCTTGACACCATATGATCTGACACCAAC 779
Query 948 GCATAAGAACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTTGTGCTGGTGGA 1007
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 GCATAAGAACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTCGTGCTGGTGGA 839
Query 1008 TGAAGAGGATCGCCGTTACTTCAAGCAGCAAGAAATCACGTTGTACAGGCTCAAGGAAGA 1067
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 840 TGAAGAGGATCGCCGTTACTTCAAGCAACAAGAAATCACCTTGTACAGGCTCAAGGAGGA 899
Query 1068 GACATCTTGA 1077
||||||||||
Sbjct 900 GACATCTTGA 909
> Ahg945271 jgi|Araly1|945271|scaffold_701500.1
Length=954
Score = 1086 bits (588), Expect = 0.0
Identities = 814/923 (88%), Gaps = 16/923 (2%)
Strand=Plus/Plus
Query 159 TCTTCTTATCATGAATTATCTTCTTGGAGCTTTCAAGCCAGCATGTAATATTTCAATCAC 218
|||||| || |||||||||||||||||||| |||||||| || || || |||||||||||
Sbjct 12 TCTTCTGATAATGAATTATCTTCTTGGAGCCTTCAAGCCCGCGTGCAACATTTCAATCAC 71
Query 219 ATTTACTGATGGGAAAAACCGTAAACAGGTACCCACT-AAGAAAGATAATGGACAAATAG 277
||| | ||||| ||||| ||||||||| | |||| | |||||||| ||||| |||| |
Sbjct 72 TTTTTCCGATGGCAAAAATCGTAAACAGATTCCCA-TGAAGAAAGAAAATGGTCAAACGG 130
Query 278 TTATGAAT-CCACTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCA 336
| || | ||||||||||| |||||||| |||||| |||||||| || ||||||||||
Sbjct 131 CTCTG-GTGCCACTTTTCCATAGTCAAGATACTATTTCTGGGAAGGTTTGCATTGAACCA 189
Query 337 TATCAAGGGAAAAAAGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAA 396
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAA 249
Query 397 ATGTACTTTGACAGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTG-ATGT 455
||||||||||||||||||||||| |||||||||||||||||||| ||||| | || ||||
Sbjct 250 ATGTACTTTGACAGAGGAAACTTCTATGACTTCACTTCCTTGGTTCGTGA-ACTGGATGT 308
Query 456 ACCTGGAGAAATATATGAAAGAAAGACATACCCTTTTGAATTTTCGAGC-GTTGAGATGC 514
|||||||||||||| ||||| ||||||||||||||||||||| | | | || |||||||
Sbjct 309 CCCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCAA-CTGTGGAGATGC 367
Query 515 CATATGAGACATACAATGGCGTGAACGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCA 574
||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||
Sbjct 368 CATATGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTTCTCAAAGTAACCGTCA 427
Query 575 CACGTGGTTATGCTGGAAGCATCGTGGAATACCAGGA-CTTTGTGGTCCGTAACTATGTT 633
| ||||| || |||||||||||| ||||||||||||| ||| |||||||| ||||| | |
Sbjct 428 CTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTT-GTGGTCCGGAACTACGCT 486
Query 634 CCGCTTCCTCCA-ATCAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGTCTGCA 692
|| |||||| | || ||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 487 CCACTTCCTG-ATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCA 545
Query 693 TATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAAT 752
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CATTGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAAT 605
Query 753 ATACTTTCTTCTGGTGAGAATCAAGATAAAGAATATGGATCTTGAGATAAGACGGCGAGA 812
|| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 606 CTATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGA 665
Query 813 ATCAACTGGAGCAGGAGCTAATACTCACGTCGAAACAGAAACACTAGCCAAATTTGAGTT 872
|||||| || ||||| ||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct 666 ATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACACTTGCGAAATTTGAGTT 725
Query 873 AATGGATGGTGCTCCAGTTAGAGGCGAATCGATACCTGTAAGAGTGTT-CTTGACACCAT 931
|||||||| ||||||||||||| ||||| |||||||||||| |||| || | | ||||
Sbjct 726 GATGGATGGAACTCCAGTTAGAGGTGAATCAATACCTGTAAGACTGTTTCTGGCC-CCAT 784
Query 932 ACGATCTGACACCAACGCATAAG-AACATAAACAACAAATTCAGCGTAAAGTATTATCTA 990
||||||| |||||||| ||| | ||||| ||||||||||||||||| |||||||||||
Sbjct 785 ACGATCTTACACCAACACATC-GCAACATTAACAACAAATTCAGCGTCAAGTATTATCTG 843
Query 991 AATCTTGTGCTGGTGGATGAAGAGGATCGCCGTTACTTCAAGCAGCAAGAAATCACGTTG 1050
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 AATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTG 903
Query 1051 TACAGGCTCAAGGAAGAGACATC 1073
|||||| | |||||||| |||||
Sbjct 904 TACAGGTTGAAGGAAGACACATC 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5