BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53540.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495431 jgi|Araly1|495431|fgenesh2_kg.8__1247__AT5G53540.1 2078 0.0
> Ahg495431 jgi|Araly1|495431|fgenesh2_kg.8__1247__AT5G53540.1
Length=1379
Score = 2078 bits (1125), Expect = 0.0
Identities = 1304/1389 (94%), Gaps = 17/1389 (1%)
Strand=Plus/Plus
Query 12 CTGTTCTTTTCCTGTAATTTCCAGTTTAGAGCTTTCTTCTTCCTTTCCCTATCCTCAACC 71
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 CTGTTCTTTTCCTGTAATTT-CAGTTAAGAGCTTTCTTCTTCCTTTCCCTATCCTCAAAC 59
Query 72 CCAAACGAACGCTCTTCAAGAATTAGGG-----TTTCGTTTTGAATCTTCTCTGATTCCC 126
|| || |||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 60 CC--AC--ACGCTCTTCAAGAATTAGGGTTTCTTTTCTTTTTGAATCTTCTCTAATTCCC 115
Query 127 AAATCCAAAGATATGAAGAGATCTTCAGGGAGAAAGGATTCAAATTTCATAGAACAATTG 186
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 116 AAATCCAAAGATATGAAGAGATCTTCAGGTAAAAAGGATTCAAATTTCATAGAGCAATTG 175
Query 187 ATACTTTACGTCGCTAGTGCTGCATTGAGTAGCTTGGTTCTCTACGTTGGTCTCCG-TCA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 176 ATACTTTACGTCGCTAGTGCTGCATTGAGTAGCTTGGTTCTCTACGTTGGTCTTCGAGCA 235
Query 246 ACTTGACCCGAACCGTGACGCCGCTAAAAAGTCTCTCGAGCACAAAAGAGAAATCGCCAA 305
| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 236 A-TTGACCCGAACCGTGACGCAGCTAAAAAGTCTCTCGAGCATAAAAGAGAAATCGCCAA 294
Query 306 ACGTTTGGGTCGTCCTCTTATTCAAACCAATCAATACGAGGATGTGATTGCGTGTGATGT 365
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACGTTTAGGTCGTCCTCTTATTCAAACCAATCAATACGAGGATGTGATTGCGTGTGATGT 354
Query 366 AATAAACCCATTACACATAGATGTTGAATTTGGTTCTATTGGAGGATTGGAGTCAATTAA 425
|||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 355 AATAAACCCATTACACATTGATGTTGAGTTTGGTTCTATTGGAGGGTTAGAGTCAATTAA 414
Query 426 GCAAGCTTTGTATGAGCTTGTGATTCTACCATTGAAAAGACCTGAGCTTTTTGCTTATGG 485
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 GCAAGCTTTGTATGAGCTAGTGATTCTACCATTGAAAAGACCTGAACTTTTTGCTTATGG 474
Query 486 GAAGTTACTGGGTCCTCAAAAGGGTGTTTTGTTGTATGGTCCTCCTGGAACTGGGAAGAC 545
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 475 GAAGTTACTTGGTCCTCAAAAGGGAGTTTTGTTGTATGGTCCTCCTGGTACTGGGAAGAC 534
Query 546 TATGCTTGCTAAAGCGATTGCGAGAGAGTCTGAAGCTGTTTTTATTAATGTAAAGGTTTC 605
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 535 TATGCTTGCTAAAGCGATTGCGAGAGAATCGGAAGCTGTTTTTATTAATGTTAAGGTTTC 594
Query 606 TAATTTGATGAGCAAGTGGTTTGGTGATGCACAGAAGCTTGTGTCTGCTGTGTTTAGCTT 665
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 595 TAATTTGATGAGCAAGTGGTTTGGTGATGCTCAGAAGCTTGTGTCTGCCGTGTTTAGCTT 654
Query 666 GGCGTATAAACTCCAACCTGCTATTATTTTTATCGATGAGGTGGATAGCTTTCTTGGCCA 725
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 655 GGCCTATAAACTCCAACCTGCTATTATTTTTATCGATGAGGTGGATAGTTTTCTTGGCCA 714
Query 726 GCGACGGTCGACTGATAATGAAGCAATGTCGAATATGAAGACCGAGTTTATGGCTTTATG 785
||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 715 GCGTCGTTCGACTGATAATGAAGCAATGTTGAATATGAAGACTGAGTTTATGGCTTTATG 774
Query 786 GGATGGATTTACTACAGACCAGAATGCGAGGGTGATGGTTCTTGCTGCAACTAACAGACC 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGATGGATTTACTACAGACCAGAATGCGAGGGTGATGGTTCTTGCTGCAACTAACAGACC 834
Query 846 ATCAGAGCTCGATGAAGCGATATTGAGGCGTTTTCCTCAGTCATTTGAGATCGGGATGCC 905
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTCGGAGCTTGATGAAGCAATATTGAGGCGTTTTCCTCAGTCATTTGAGATCGGGATGCC 894
Query 906 TGATTGCCAGGAGAGAGCGCAAATATTGAAAGTTGTTTTGAAAGGAGAGAGTGTTGAATC 965
|||||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||| |
Sbjct 895 TGATTGCCGGGAGAGAGCTCAAATATTGAAAGTGGTTTTGAAAGGAGAGAGGGTTGAACC 954
Query 966 AGATATTAACTATGATCGTATAGCTCGTTTATGTGAGGACTATACCGGATCAGATATTTT 1025
||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||
Sbjct 955 AGATATTAACTATGATCATGTAGCTCGTTTATGTGAAGACTATACTGGATCAGATATTTT 1014
Query 1026 TGAACTCTGCAAAAAAGCAGCTTACTTCCCAATCCGAGAAATCCTAGAGGCAGAGAAAGA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1015 TGAACTCTGCAAAAAAGCAGCTTACTTCCCAATCCGAGAAATCCTAGAGGCGGAGAAAAA 1074
Query 1086 GGGCAAACGAGTTTCTGTTCCTAGACCATTGACACAACTGGACTTGGAGAAGGTTCTTGC 1145
|||||||| | ||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1075 GGGCAAACAAATTTCTGTGCCTAGACCATTGTCACAACTAGACTTGGAGAAGGTTCTTGC 1134
Query 1146 TACCTCAAAGAAGACACAAGTTGCTGCAAGCGAGTACACTGGTTTAAGCTCTCAATCTTC 1205
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1135 TACCTCGAAGAAGACACAAGTTGCTGCAAGCGAGTACACTGGTTTAAGCTCGCAATCTTC 1194
Query 1206 TGTCTGGGGAAGTCCAAGCAATGCCGATGAGGTCCAAGCAGCTATAAACGGCATCTCCAA 1265
||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1195 ACTCTGGAGAAGTCCAAGCAATGCCGACGAGGTCCAAGCAGCTATAAACGGCATTTCAAA 1254
Query 1266 GCTTTTTGTCTCGCAGC-TTAGAAACATTCAGCCAGATTCTCAGGATTCATATCAACAAC 1324
|||||| ||||| | || |||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1255 GCTTTTCGTCTCTC-GCCTTAGAAACATCCAGCCAGACTCTCAAGATTCATATCAACATG 1313
Query 1325 ATCCTTCAGAAGGAGATTCGGAATAGAAGCAAACTCTTCACTAGAGCTTCGTATAGTCCA 1384
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 AT--T-CAGAAGGAGATTCGGAATAGAAGCAAACTCTTCACTAGAGCTTTGTATAGTCCA 1370
Query 1385 AAAAGAGTA 1393
|||||||||
Sbjct 1371 AAAAGAGTA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5