BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53550.1
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916997 jgi|Araly1|916997|Al_scaffold_0008_1748 3131 0.0
> Ahg916997 jgi|Araly1|916997|Al_scaffold_0008_1748
Length=2028
Score = 3131 bits (1695), Expect = 0.0
Identities = 1923/2034 (95%), Gaps = 12/2034 (1%)
Strand=Plus/Plus
Query 328 ATGAGGAGTATGATGATGGAGAGAGAGGGAAGGAATGAGATAGAAAGAGAAGTAATAGAT 387
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGGAGCATGATGATGGATAGAGAGGGAAGGAATGAGATAGAGAGAGAAGTAATAGAT 60
Query 388 GACTTGGAAGAGACGCAAAACGAAGGAGATGATTTCAAGTCAATACCTCCATGGAAGGA- 446
||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||
Sbjct 61 GACTTGGAAGAGACGCAAAACGAAGCAGATGAATTCAAGTCAATTCCTCCATGGAA-GAG 119
Query 447 ACAAATCACTTTCAGAGGAATTGTTGCAAGTTTAATCATTGGTATAATCTACAGTGTGAT 506
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TCAAATTACTGTCAGAGGAATTGTTGCAAGTTTGATCATTGGTATAATCTACAGTGTGAT 179
Query 507 CGTGATGAAACTAAACCTAACAACAGGTTTGGTCCCAAACCTAAATGTCTCTGCAGCACT 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TGTGATGAAACTAAACCTAACAACAGGTTTGGTCCCAAACCTAAATGTCTCTGCAGCTCT 239
Query 567 TTTAGCCTTTGTCTTCCTTAGAAGCTGGACCAAGCTG-TTGACCAAAGCCGGGATTGTGA 625
|||||||||||| || ||||||||||||||||||||| || |||||||| || |||||||
Sbjct 240 TTTAGCCTTTGTGTTTCTTAGAAGCTGGACCAAGCTGCTT-ACCAAAGCTGGAATTGTGA 298
Query 626 CTAAACCGTTCACTAAACAAGAGAACACTGTTGTCCAAACATGTGCTGTTGCTTGTTACA 685
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTAAACCGTTTACTAAACAAGAGAACACTGTTGTCCAAACATGTGCTGTTGCTTGTTACA 358
Query 686 GCATTGCAGTTGGAGGTGGGTTTGGTTCATACCTTCTTGGTTTGAACAGAATTACTTATG 745
||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 359 GCATTTCAGTTGGAGGTGGGTTTGGTTCGTACCTTCTTGGTTTGAACAGAAATACTTAT- 417
Query 746 A-ACAGTCAGGAGGAACTCACACTGATGGGAATTATCC-GGAAGGCACGAAAGAGCCTGG 803
| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 418 ATACAGTCAGGAGGAACTCAAACTGATGGGAATTATCCGGGAA-GCACGAAAGAGCCTGG 476
Query 804 AATCGGTTGGATGACCGCTTTCTTGTTCTTTACTTGCTTTGTTGGTCTTTTAGCATTGGT 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AATCGGTTGGATGACCGCTTTCTTGTTCTTTACTTGCTTTGTTGGTCTTTTAGCATTGGT 536
Query 864 TCCTCTAAGAAAGATCATGATCATAGACTACAAGCTGACATATCCAAGTGGAACAGCTAC 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCCTCTAAGAAAGATCATGATCATAGACTACAAGCTGACATATCCAAGTGGAACAGCTAC 596
Query 924 CGCGGTTTTGATCAACGGTTTCCACACTCCTAAAGGCAATAAAATGGCCAAGAAACAAGT 983
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGCGGTTTTGATCAACGGTTTCCACACTCCTAAAGGCAATAAAATGGCCAAGAAACAAGT 656
Query 984 GTTTGGGTTTGTGAAGTACTTCTCATTTAGCTTCATTTGGGCTTTCTTCCAATGGTTCTT 1043
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTTAGGCTTTGTGAAGTACTTCTCATTTAGCTTCATTTGGGCTTTCTTCCAATGGTTCTT 716
Query 1044 CTCTGGTGGTACAGAGTGCGGTTTCATTCAGTTTCCAACTTTCGGGTTAGAAGCTTTGAA 1103
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||
Sbjct 717 CTCTGGTGGTACAAAGTGCGGATTCATTCAGTTTCCAACTTTCGGATTAAAAGCTTGGAC 776
Query 1104 GAACACATTCTACTTCGACTTTAGCATGACATACGTTGGAGCAGGAATGATCTGTCCCCA 1163
|||| | ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 777 GAACTCGTTCTACTTCGACTTTAGTATGACATACATTGGAGCAGGAATGATCTGTCCCCA 836
Query 1164 TATTGTCAA-TATATCTTTGCTTTTTGGCGCGGTTCTGTCTTGGGGAATCATGTGGCCAC 1222
|||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 CATTGTCAACT-TATCTTTGCTTTTCGGCGCGGTTCTGTCTTGGGGAATCATGTGGCCAC 895
Query 1223 TCATTAAAGGTCTTAAAGGAGATTGGTTCCCATCAACTCTTCCTGAAAACAGCATGAAGA 1282
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 896 TCATTAAAGGTCTTAAAGGAGATTGGTTCCCATCAACTCTTTCTGAAAGTAGCATGAAGA 955
Query 1283 GTCTCAATGGTTACAAGGTGTTTATATCAATCTCATTGATCCTCGGAGACGGGCTTTACC 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTCTCAATGGTTACAAGGTGTTTATATCAATCTCATTGATCCTCGGAGACGGGCTTTACC 1015
Query 1343 AATTCATCAAGATACTTTTTAAGACAGGAATAAACATGTACGTCAAGTTAAACAATCGCA 1402
||||||||||||||||| ||| |||||||| |||||||||| ||||||||| |||||
Sbjct 1016 AATTCATCAAGATACTTGTTATCACAGGAATCAACATGTACGCCAAGTTAAAGGATCGCC 1075
Query 1403 ACTCTGGGAAATCTAATTCGGAGAAAGATAAGCAATCTATTGCAGATCTTAAAAGAGATG 1462
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACACTGGGAAATCTAATTCGGAGAAAGATAAGCAATCTATTGCAGATCTTAAAAGAGATG 1135
Query 1463 AGATCTTTGTAAGAGACAGCATTCCATTATGGGTTGCAGCAGTAGGATACGCAGCGTTCT 1522
|||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1136 AGATCTTTGTAAGAGACAGCTTTCCATTATGGGTGGCAGCAGTCGGATATGCAGCGTTCT 1195
Query 1523 CTGTTGTCTCGATCATCGCGATCCCTATAATGTTCCCCGAGCTGAAATGGTACTTCATAG 1582
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1196 CTGTTGTCTCGATAATCGCAATCCCTATAATGTTCCCCGAGCTCAAATGGTACTTCATAG 1255
Query 1583 TCGTAGCTTACATGTTAGCTCCATCGTTAGGTTTCAGTAACGCTTATGGAGCAGGGCTAA 1642
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1256 TCGTAGCTTACATGTTAGCTCCATCGTTAGGTTTCAGCAACGCTTATGGAGCAGGACTTA 1315
Query 1643 CAGATATGAACATGGCTTATAACTATGGTAAAGTCGCTCTGTTTATCTTAGCCGCTATGG 1702
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1316 CAGACATGAACATGGCTTATAACTATGGTAAAGTCGCTCTGTTCATCTTAGCCGCTATGG 1375
Query 1703 CAGGGAAACAAAATGGTGTAGTCGCGGGACTTGTCGGATGCGGGTTGATAAAATCGATTG 1762
|||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1376 CAGGGAAAGAAAACGGTGTCGTCGCGGGACTTGTTGGATGCGGGTTGATAAAATCGATTG 1435
Query 1763 TATCGATTTCTTCTGACCTAATGCACGATTTCAAGACAGGACATTTGACTCTGACTTCAC 1822
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1436 TCTCGATTTCTTCTGACCTAATGCACGATTTCAAGACAGGACATTTGACTCTGACTTCGC 1495
Query 1823 CTAGGTCGATGCTTGTGAGTCAAGCGATCGGTACAGCGATCGGATGCGTTGTGGCGCCTC 1882
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1496 CGAGGTCGATGCTTGTGAGTCAAGCAATCGGTACAGCGATCGGATGCGTTGTGGCTCCTC 1555
Query 1883 TAACTTTCTTCTTGTTTTATAAAGCTTTCGATGTCGGGAACCAGGAGGGAGAGTACAAAG 1942
| ||||||||||||||||| ||||||||||||||||| |||| | |||||||| ||||
Sbjct 1556 TCACTTTCTTCTTGTTTTACAAAGCTTTCGATGTCGGAAACCCTGCCGGAGAGTATAAAG 1615
Query 1943 CTCCTTACGCTTTGGTATACAGAAACATGGCAATTCTTGGAGTTGAAGGTTTCTCTGCTT 2002
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1616 CTCCTTACGCTTTGGTATACAGAAACATGGCGATTCTTGGAGTTGAAGGTTTCTCTGCTT 1675
Query 2003 TGCCTCAACATTGTTTACAGCTTTGTTACGGGTTTTTCGCATTCGCGGTGGCGGCAAATC 2062
|||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1676 TGCCTCAACATTGTCTCCAGCTTTGTTACGGGTTTTTCGCATTCGCGGTGGCAGCGAATC 1735
Query 2063 TCGTTAGGGATAGGTTACCGGATAAGATAGGGAATTGGGTTCCATTACCGATGGCAATGG 2122
| ||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1736 TTGTTAGGGATTGGTCGCCGGAGAAGATAGGGAAGTGGGTTCCATTACCGATGGCAATGG 1795
Query 2123 CGGTTCCGTTTCTTGTTGGAGGGTACTTTGCTATTGATATGTGTGT-GGGAAGTTTGATT 2181
|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||||
Sbjct 1796 CGGTTCCGTTTCTTGTCGGAGGGTACTTCGCCATTGATATGTGTGTTGGGA-GTTTGATT 1854
Query 2182 GTGTTTGCTTGGAATATGAGAGATCGAGTTAAAGCCGGTTTAATGGTACCGGCGGTTGCT 2241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1855 GTGTTTGCTTGGAATATGAGAGATCGGGTTAAAGCCGGTTTAATGGTACCGGCGGTTGCT 1914
Query 2242 TCCGGTTTGATATGTGGAGATGGTCTATGGATTTTGCCGTCGTCGGTTCTTGCTTTGGCC 2301
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1915 TCCGGTTTGATATGTGGAGATGGTCTTTGGATTTTGCCGTCGTCGGTTCTTGCTTTGGCC 1974
Query 2302 GGCGTTAGACCTCCTATATGTATGGGCTTCATGCCGAGTAAATATTCGAGTTAA 2355
|| |||| |||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 1975 GGAGTTAAACCTCCGATCTGTATGAACTTCATGCCGAGTAAATATTCGAGTTAA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94082905150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5